Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhizoclosmatium_20globosum_20[genbank_20GCA_5F002104985.1_202017-04- 20] 437 sequences; 57,018,351 total letters Query= NC_025412.1 Length=369360 Score E Sequences producing significant alignments: (Bits) Value seq30 141 2e-28 seq335 138 3e-27 seq90 87.8 4e-12 >seq30 Length=118212 Score = 141 bits (156), Expect = 2e-28 Identities = 155/206 (75%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232 ||||| || ||| || ||||| ||||| || |||||| | || || || ||||||| Sbjct 48156 CAGATCTTCGTCAAGACCCTCACGGGAAAGACCATCACTCTTGAGGTTGAGTCTTCTGAC 48215 Query 206233 ACAGTCGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAA 206292 || ||||| || ||| ||||||||||| || || || ||| ||| ||| ||| Sbjct 48216 ACCATCGAAAACGTCAAGGCCAAGATTCAAGACAAGGAGGGTATTCCGCCTGACCAGCAA 48275 Query 206293 AGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTC 206352 | || |||||||||||||||||| | |||||||| | ||| | |||| |||||| || Sbjct 48276 CGTCTCATCTTCGCCGGAAAGCAGCTTGAAGATGGCCGCACTCTCTCCGACTACAACATC 48335 Query 206353 CAGAAAGAGTCTACTCTTCACCTTGT 206378 ||||| || ||||| ||||||||||| Sbjct 48336 CAGAAGGAATCTACCCTTCACCTTGT 48361 Score = 114 bits (126), Expect = 3e-20 Identities = 156/218 (72%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232 || || ||| ||| || | || ||||| || |||||||||||||| ||| ||||| Sbjct 48384 CAAATCTTTGTCAAGACTTTGACTGGAAAGACTATCACTTTGGAAGTTGAATCCTCTGAT 48443 Query 206233 ACAGTCGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAA 206292 || | || || ||| ||||| || || || ||||||||| || ||| ||| Sbjct 48444 ACCATTGAGAACGTTAAGGCCAAGATCCAGGATAAGGAAGGAATTCCACCCGACCAGCAA 48503 Query 206293 AGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTC 206352 | | ||||| || ||||||||||||||||| || | || | | || |||||| | Sbjct 48504 CGTTTGATCTTTGCTGGAAAGCAGTTGGAAGACGGCCGTACCCTTTCTGACTACAACATT 48563 Query 206353 CAGAAAGAGTCTACTCTTCACCTTGTTTTGAGACTTCG 206390 ||||| |||||||| || |||||||| ||| | ||||| Sbjct 48564 CAGAAGGAGTCTACCCTCCACCTTGTCTTGCGTCTTCG 48601 Score = 104 bits (114), Expect = 6e-17 Identities = 137/190 (72%), Gaps = 0/190 (0%) Strand=Plus/Plus Query 206184 CAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATC 206243 ||| || ||||| ||||| || || ||||||||||| || || ||||| | ||| Sbjct 47632 CAAGACCCTCACTGGAAAGACCATTACTTTGGAAGTCGAGTCATCCGACACTATTGAAAA 47691 Query 206244 AGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTT 206303 || ||| ||||| || || || |||||||| || ||| || | | || || Sbjct 47692 CGTCAAGGCCAAGATCCAGGATAAGGAAGGAATCCCACCAGACCAGCAGCGTTTGATTTT 47751 Query 206304 CGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTC 206363 |||||||||||||||||||||||| | || | | || |||||| | || || ||||| Sbjct 47752 CGCCGGAAAGCAGTTGGAAGATGGCCGCACCCTCTCTGACTACAACATTCAAAAGGAGTC 47811 Query 206364 TACTCTTCAC 206373 |||||||||| Sbjct 47812 TACTCTTCAC 47821 Score = 89.7 bits (98), Expect = 1e-12 Identities = 75/92 (82%), Gaps = 0/92 (0%) Strand=Plus/Minus Query 204764 ACAAGGTGAAGAGTAGACTCTTTCTGGACATTATAGTCAGCCAAAGTCCTTCCATCTTCC 204823 ||||||||||| ||||| || ||||||| || ||||| | | ||| | |||||||| Sbjct 48361 ACAAGGTGAAGGGTAGATTCCTTCTGGATGTTGTAGTCGGAGAGAGTGCGGCCATCTTCA 48302 Query 204824 AGCTGCTTTCCGGCGAAGATAAGCCGTTGTTG 204855 |||||||||||||||||||| || ||||| || Sbjct 48301 AGCTGCTTTCCGGCGAAGATGAGACGTTGCTG 48270 >seq335 Length=386496 Score = 138 bits (152), Expect = 3e-27 Identities = 154/206 (75%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232 ||||| || ||| || ||||| ||||| || |||||| | || || || ||||||| Sbjct 158664 CAGATCTTCGTCAAGACCCTCACGGGAAAGACCATCACTCTTGAGGTTGAGTCTTCTGAC 158723 Query 206233 ACAGTCGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAA 206292 || ||||| || ||| ||||||||||| || || || ||| || ||| ||| Sbjct 158724 ACCATCGAAAATGTCAAGGCCAAGATTCAAGACAAGGAGGGTATTCCACCTGACCAGCAA 158783 Query 206293 AGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTC 206352 | || |||||||||||||||||| | |||||||| | ||| | |||| |||||| || Sbjct 158784 CGTCTCATCTTCGCCGGAAAGCAGCTTGAAGATGGCCGCACTCTCTCCGACTACAACATC 158843 Query 206353 CAGAAAGAGTCTACTCTTCACCTTGT 206378 ||||| || ||||| ||||||||||| Sbjct 158844 CAGAAGGAATCTACCCTTCACCTTGT 158869 Score = 116 bits (128), Expect = 9e-21 Identities = 150/207 (72%), Gaps = 0/207 (0%) Strand=Plus/Minus Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232 ||||| || ||| || || || ||||| || || || |||||||| || || ||| Sbjct 38979 CAGATCTTCGTCAAGACACTTACTGGAAAGACCATTACCTTGGAAGTCGAGTCATCCGAC 38920 Query 206233 ACAGTCGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAA 206292 || | ||| || ||| |||||||| || || || || ||| || ||| ||| Sbjct 38919 ACTATTGAAAATGTGAAGGCCAAGATTCAGGATAAGGAGGGTATTCCACCTGACCAGCAA 38860 Query 206293 AGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTC 206352 | ||||| ||||| ||||||||| | |||||||| | |||||| |||| || ||| | Sbjct 38859 CGTCTTATTTTCGCTGGAAAGCAGCTTGAAGATGGTCGCACTTTGTCCGACTATAACATT 38800 Query 206353 CAGAAAGAGTCTACTCTTCACCTTGTT 206379 ||||| || || ||||||||||||||| Sbjct 38799 CAGAAGGAATCCACTCTTCACCTTGTT 38773 Score = 113 bits (124), Expect = 1e-19 Identities = 143/197 (73%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 206194 ACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCAGTAAAGCAA 206253 || ||||| || |||||||||||||| ||| ||||| || | || || ||| Sbjct 158913 ACTGGAAAGACCATCACTTTGGAAGTTGAATCCTCTGATACCATTGAGAACGTTAAGGCC 158972 Query 206254 AAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTCGCCGGAAAG 206313 ||||| || || || ||||||||| || ||| ||| | | ||||| || |||||| Sbjct 158973 AAGATCCAGGATAAGGAAGGAATTCCACCCGACCAGCAACGTTTGATCTTTGCTGGAAAG 159032 Query 206314 CAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCTACTCTTCAC 206373 ||||||||||| || | || | | || |||||| | ||||| |||||||| || ||| Sbjct 159033 CAGTTGGAAGACGGCCGTACCCTTTCTGACTACAACATTCAGAAGGAGTCTACCCTCCAC 159092 Query 206374 CTTGTTTTGAGACTTCG 206390 ||||| ||| | ||||| Sbjct 159093 CTTGTCTTGCGTCTTCG 159109 Score = 102 bits (112), Expect = 2e-16 Identities = 143/201 (71%), Gaps = 0/201 (0%) Strand=Plus/Plus Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232 || || ||| ||| || ||||| ||||| || || ||||||||||| || || ||| Sbjct 158129 CAAATCTTTGTCAAGACCCTCACTGGAAAGACCATTACTTTGGAAGTCGAGTCATCCGAC 158188 Query 206233 ACAGTCGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAA 206292 || | ||| || ||| ||||| || || || |||||||| || ||| || Sbjct 158189 ACTATTGAAAACGTCAAGGCCAAGATCCAGGATAAGGAAGGAATCCCACCAGACCAGCAG 158248 Query 206293 AGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTC 206352 | | || ||||| |||||||||||||||||||| | || | | || |||||| | Sbjct 158249 CGTTTGATTTTCGCTGGAAAGCAGTTGGAAGATGGCCGCACCCTCTCTGACTACAACATT 158308 Query 206353 CAGAAAGAGTCTACTCTTCAC 206373 || || ||||||||||||||| Sbjct 158309 CAAAAGGAGTCTACTCTTCAC 158329 Score = 100 bits (110), Expect = 7e-16 Identities = 153/218 (70%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232 || || ||| ||| || | || || || || |||||||||||||| || ||||| Sbjct 38751 CAAATCTTTGTCAAGACTTTGACCGGCAAGACCATCACTTTGGAAGTTGAGTCGTCTGAT 38692 Query 206233 ACAGTCGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAA 206292 || | || || ||| ||||| ||||| || |||||||| || ||| || Sbjct 38691 ACCATTGAGAACGTGAAGGCCAAGATCCAAGACAAGGAAGGAATCCCACCTGACCAGCAG 38632 Query 206293 AGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTC 206352 | | |||||||| |||||||| | || ||||| | || | | ||||||||| || Sbjct 38631 CGTTTGATCTTCGCTGGAAAGCAACTTGAGGATGGCCGTACCCTTTCTGATTACAACATC 38572 Query 206353 CAGAAAGAGTCTACTCTTCACCTTGTTTTGAGACTTCG 206390 ||||| ||||| ||||||||||| || ||| | ||||| Sbjct 38571 CAGAAGGAGTCCACTCTTCACCTCGTCTTGCGTCTTCG 38534 Score = 96.9 bits (106), Expect = 8e-15 Identities = 77/93 (83%), Gaps = 0/93 (0%) Strand=Plus/Plus Query 204763 AACAAGGTGAAGAGTAGACTCTTTCTGGACATTATAGTCAGCCAAAGTCCTTCCATCTTC 204822 ||||||||||||||| || || ||||| | |||||||| | |||||| | |||||||| Sbjct 38773 AACAAGGTGAAGAGTGGATTCCTTCTGAATGTTATAGTCGGACAAAGTGCGACCATCTTC 38832 Query 204823 CAGCTGCTTTCCGGCGAAGATAAGCCGTTGTTG 204855 ||||||||||| ||||| ||||| ||||| || Sbjct 38833 AAGCTGCTTTCCAGCGAAAATAAGACGTTGCTG 38865 Score = 96.9 bits (106), Expect = 8e-15 Identities = 152/218 (70%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232 ||||| ||| ||| || | || ||||| || || ||| | || || ||| || || Sbjct 39207 CAGATCTTTGTCAAGACTTTGACTGGAAAGACCATTACTCTTGAGGTTGAATCCTCCGAT 39148 Query 206233 ACAGTCGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAA 206292 || | || || ||| ||||| || || || |||||||| || ||| || Sbjct 39147 ACCATTGAGAATGTCAAGGCCAAGATCCAGGACAAGGAAGGAATCCCACCTGACCAGCAG 39088 Query 206293 AGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTC 206352 | | ||||| ||||||||||||||||||||||| | || | | || |||||| | Sbjct 39087 CGTTTGATCTTTGCCGGAAAGCAGTTGGAAGATGGCCGAACCCTCTCTGACTACAACATT 39028 Query 206353 CAGAAAGAGTCTACTCTTCACCTTGTTTTGAGACTTCG 206390 || ||||| |||||||| |||||||||||| | || || Sbjct 39027 CAAAAAGAATCTACTCTCCACCTTGTTTTGCGTCTCCG 38990 Score = 89.7 bits (98), Expect = 1e-12 Identities = 75/92 (82%), Gaps = 0/92 (0%) Strand=Plus/Minus Query 204764 ACAAGGTGAAGAGTAGACTCTTTCTGGACATTATAGTCAGCCAAAGTCCTTCCATCTTCC 204823 ||||||||||| ||||| || ||||||| || ||||| | | ||| | |||||||| Sbjct 158869 ACAAGGTGAAGGGTAGATTCCTTCTGGATGTTGTAGTCGGAGAGAGTGCGGCCATCTTCA 158810 Query 204824 AGCTGCTTTCCGGCGAAGATAAGCCGTTGTTG 204855 |||||||||||||||||||| || ||||| || Sbjct 158809 AGCTGCTTTCCGGCGAAGATGAGACGTTGCTG 158778 >seq90 Length=625778 Score = 87.8 bits (96), Expect = 4e-12 Identities = 150/218 (69%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232 ||||| || ||| || ||||| || || || ||||| | || ||||| ||| ||| Sbjct 499209 CAGATCTTCGTCAAGACCCTCACGGGTAAGACCATCACCCTCGAGGTGGAGTCTTCCGAC 499268 Query 206233 ACAGTCGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAA 206292 || ||||| || ||| ||||| || || || || ||||| || ||| || Sbjct 499269 ACTATCGAAAACGTCAAGGCCAAGATCCAGGACAAGGAGGGAATCCCACCTGACCAGCAG 499328 Query 206293 AGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTC 206352 | || ||||| |||||||||||| | || || || | || | | || |||||| || Sbjct 499329 CGTCTCATCTTTGCCGGAAAGCAGCTCGAGGACGGCCGCACCCTTTCTGACTACAACATC 499388 Query 206353 CAGAAAGAGTCTACTCTTCACCTTGTTTTGAGACTTCG 206390 ||||| ||||| || || ||||| || ||| | || || Sbjct 499389 CAGAAGGAGTCGACCCTCCACCTCGTCTTGCGTCTCCG 499426 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1181814182911477