Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhizoclosmatium_20globosum_20[genbank_20GCA_5F002104985.1_202017-04- 20] 437 sequences; 57,018,351 total letters Query= NC_026440.1 Length=2243109 Score E Sequences producing significant alignments: (Bits) Value seq394 147 3e-29 seq49 145 1e-28 seq198 105 1e-16 seq112 100 4e-15 >seq394 Length=885996 Score = 147 bits (162), Expect = 3e-29 Identities = 183/247 (74%), Gaps = 8/247 (3%) Strand=Plus/Plus Query 724896 TCGTACTCGTCCTTTATCTACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCA 724955 |||||||| |||| ||||||||||||||||||||||||||||| |||| | | Sbjct 295085 TCGTACTCCTCCTACATCTACAAGGTGCTCAAGCAGGTGCACCCAGAGACCGGT-----A 295139 Query 724956 TCCTCCAACAAGTCCATGTCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATC 725015 | ||| |||||| ||||||| ||||||||||||||||| |||||||| |||| || ||| Sbjct 295140 T-CTCGAACAAGGCCATGTCCATCATGAACTCGTTTGT-AACGACATCTTCGAGCGTATC 295197 Query 725016 GGCACCGAGGCCGGTCGCCTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAG 725075 || ||||||| |||| | ||||||| | ||| ||| | || ||| Sbjct 295198 -GCGTCGAGGCCTCCAAGTTGGCTGCATACAACAAGAGATCCACCATCTCGTCCCGTGAG 295256 Query 725076 ATCCAGACCGCCGTGCGCCTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAG 725135 ||||||||| | || || |||| | | || || || |||| |||||||||||| ||| Sbjct 295257 ATCCAGACCTCGGTCCGTTTGATTCTCCCAGGAGAGCTTGCCAAGCACGCCGTCTCTGAG 295316 Query 725136 GGCACCA 725142 || |||| Sbjct 295317 GGTACCA 295323 Score = 145 bits (160), Expect = 1e-28 Identities = 180/245 (73%), Gaps = 6/245 (2%) Strand=Plus/Minus Query 724896 TCGTACTCGTCCTTTATCTACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCA 724955 |||||||| |||| ||||||||||||||||||||||||||||| |||| | | Sbjct 115947 TCGTACTCCTCCTACATCTACAAGGTGCTCAAGCAGGTGCACCCAGAGACCGGT-----A 115893 Query 724956 TCCTCCAACAAGTCCATGTCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATC 725015 || || |||||| ||||||| ||||||||||||||||| |||||||| | || || ||| Sbjct 115892 TC-TCGAACAAGGCCATGTCCATCATGAACTCGTTTGTTAACGACATCTTTGAGCGTATC 115834 Query 725016 GGCACCGAGGCCGGTCGCCTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAG 725075 | | |||||| |||| || ||||||| | ||| ||| | || ||| Sbjct 115833 GCGTCGGAGGCCTCCAAGTTGGCTGCCTACAACAAGAGATCCACCATCTCGTCCCGTGAG 115774 Query 725076 ATCCAGACCGCCGTGCGCCTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAG 725135 ||||||||| | || || |||| | | || || || |||| |||||||||||| ||| Sbjct 115773 ATCCAGACCTCGGTCCGTTTGATTCTCCCAGGAGAGCTTGCCAAGCACGCCGTCTCTGAG 115714 Query 725136 GGCAC 725140 || || Sbjct 115713 GGTAC 115709 Score = 140 bits (154), Expect = 5e-27 Identities = 180/247 (73%), Gaps = 6/247 (2%) Strand=Plus/Minus Query 724896 TCGTACTCGTCCTTTATCTACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCA 724955 |||||||| |||| ||||||||||||||||||||||||||||| |||| | | Sbjct 164398 TCGTACTCCTCCTACATCTACAAGGTGCTCAAGCAGGTGCACCCAGAGACCGGT-----A 164344 Query 724956 TCCTCCAACAAGTCCATGTCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATC 725015 | ||| |||||| ||||||| |||||||||||||| || |||||||| | || || ||| Sbjct 164343 T-CTCGAACAAGGCCATGTCCATCATGAACTCGTTCGTTAACGACATCTTTGAGCGTATC 164285 Query 725016 GGCACCGAGGCCGGTCGCCTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAG 725075 | | |||||| |||| | ||||||| | ||| ||| | || ||| Sbjct 164284 GCGTCGGAGGCCTCCAAGTTGGCTGCATACAACAAGAGATCCACCATCTCTTCTCGTGAG 164225 Query 725076 ATCCAGACCGCCGTGCGCCTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAG 725135 ||||||||| | || || |||| | | || || || |||| |||||||||||| ||| Sbjct 164224 ATCCAGACCTCTGTCCGTTTGATTCTCCCAGGAGAGCTTGCCAAGCACGCCGTCTCTGAG 164165 Query 725136 GGCACCA 725142 || |||| Sbjct 164164 GGTACCA 164158 >seq49 Length=98384 Score = 145 bits (160), Expect = 1e-28 Identities = 181/247 (73%), Gaps = 6/247 (2%) Strand=Plus/Minus Query 724896 TCGTACTCGTCCTTTATCTACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCA 724955 |||||||| |||| ||||||||||||||||||||||||||||| |||| | | Sbjct 44913 TCGTACTCCTCCTACATCTACAAGGTGCTCAAGCAGGTGCACCCAGAGACCGGT-----A 44859 Query 724956 TCCTCCAACAAGTCCATGTCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATC 725015 || || |||||| ||||||| |||||||||||||||||||||||||| | || || ||| Sbjct 44858 TC-TCGAACAAGGCCATGTCCATCATGAACTCGTTTGTCAACGACATCTTTGAGCGTATC 44800 Query 725016 GGCACCGAGGCCGGTCGCCTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAG 725075 | | |||||| |||| | ||||||| | ||| ||| | || ||| Sbjct 44799 GCGTCGGAGGCCTCCAAGTTGGCTGCATACAACAAGAGATCCACTATCTCGTCCCGTGAG 44740 Query 725076 ATCCAGACCGCCGTGCGCCTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAG 725135 ||||||||| | || || |||| | | || || || |||| |||||| ||||| ||| Sbjct 44739 ATCCAGACCTCTGTCCGTTTGATTCTCCCAGGAGAGCTTGCCAAGCACGCTGTCTCTGAG 44680 Query 725136 GGCACCA 725142 || |||| Sbjct 44679 GGTACCA 44673 Score = 145 bits (160), Expect = 1e-28 Identities = 181/247 (73%), Gaps = 6/247 (2%) Strand=Plus/Minus Query 724896 TCGTACTCGTCCTTTATCTACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCA 724955 || ||||| |||| ||||||||||||||||||||||||||||| |||| | | Sbjct 93149 TCTTACTCCTCCTACATCTACAAGGTGCTCAAGCAGGTGCACCCAGAGACCGGT-----A 93095 Query 724956 TCCTCCAACAAGTCCATGTCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATC 725015 || || |||||| ||||||| ||||||||||||||||| |||||||| |||| || ||| Sbjct 93094 TC-TCGAACAAGGCCATGTCCATCATGAACTCGTTTGTTAACGACATCTTCGAGCGTATC 93036 Query 725016 GGCACCGAGGCCGGTCGCCTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAG 725075 | | |||||| |||| | ||||||| | ||||||| | || ||| Sbjct 93035 GCGTCGGAGGCCTCCAAGTTGGCTGCATACAACAAGAGATCCACGATCTCGTCCCGTGAG 92976 Query 725076 ATCCAGACCGCCGTGCGCCTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAG 725135 ||||| ||| | || || |||| | | || || || |||| |||||||||||| ||| Sbjct 92975 ATCCAAACCTCGGTCCGTTTGATTCTCCCAGGAGAGCTTGCCAAGCACGCCGTCTCTGAG 92916 Query 725136 GGCACCA 725142 || |||| Sbjct 92915 GGTACCA 92909 >seq198 Length=42743 Score = 105 bits (116), Expect = 1e-16 Identities = 171/245 (70%), Gaps = 6/245 (2%) Strand=Plus/Minus Query 724896 TCGTACTCGTCCTTTATCTACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCA 724955 |||||||| |||| ||||||||||| || ||||||||||| || || | | | Sbjct 36971 TCGTACTCCTCCTACATCTACAAGGTTCTTAAGCAGGTGCATCCAGAGACTGGT-----A 36917 Query 724956 TCCTCCAACAAGTCCATGTCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATC 725015 || || |||||| ||||||| || |||||||| || ||||||||||| |||| || ||| Sbjct 36916 TC-TCTAACAAGGCCATGTCTATTATGAACTCATTCGTCAACGACATTTTCGAACGTATC 36858 Query 725016 GGCACCGAGGCCGGTCGCCTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAG 725075 | | ||||| |||| | ||||||| | ||| ||| | || ||| Sbjct 36857 GCGTCTGAGGCTTCCAAGTTGGCTGCTTACAACAAGAGATCCACAATCTCATCCCGTGAG 36798 Query 725076 ATCCAGACCGCCGTGCGCCTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAG 725135 ||||| ||| | || || |||| | | || ||||| || | ||| |||||||| ||| Sbjct 36797 ATCCAAACCTCTGTCCGTTTGATTCTCCCAGGAGAACTCGCTAAGCATGCCGTCTCTGAG 36738 Query 725136 GGCAC 725140 || || Sbjct 36737 GGAAC 36733 >seq112 Length=954752 Score = 100 bits (110), Expect = 4e-15 Identities = 170/245 (69%), Gaps = 6/245 (2%) Strand=Plus/Minus Query 724896 TCGTACTCGTCCTTTATCTACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCA 724955 |||||||| |||| ||||||||||| || |||||||||||||| || | | | Sbjct 211530 TCGTACTCCTCCTACATCTACAAGGTTCTTAAGCAGGTGCACCCAGAGACTGGT-----A 211476 Query 724956 TCCTCCAACAAGTCCATGTCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATC 725015 || || |||||| ||||||| || |||||||| || ||||||||||| |||| || ||| Sbjct 211475 TC-TCTAACAAGGCCATGTCTATTATGAACTCATTCGTCAACGACATTTTCGAACGTATC 211417 Query 725016 GGCACCGAGGCCGGTCGCCTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAG 725075 | | ||||| |||| | |||||| | ||| ||| | || ||| Sbjct 211416 GCGTCTGAGGCTTCCAAGTTGGCTGCTTATAACAAGAGATCCACCATCTCATCCCGTGAG 211357 Query 725076 ATCCAGACCGCCGTGCGCCTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAG 725135 ||||| ||| | || || |||| | | || ||||| || | || |||||||| ||| Sbjct 211356 ATCCAAACCTCTGTCCGTTTGATTCTCCCAGGAGAACTTGCTAAACATGCCGTCTCTGAG 211297 Query 725136 GGCAC 725140 || || Sbjct 211296 GGAAC 211292 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7177769050546794