Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhizoclosmatium_20globosum_20[genbank_20GCA_5F002104985.1_202017-04- 20] 437 sequences; 57,018,351 total letters Query= NC_027778.1 Length=124244 Score E Sequences producing significant alignments: (Bits) Value seq427 123 2e-23 >seq427 Length=773343 Score = 123 bits (136), Expect = 2e-23 Identities = 258/381 (68%), Gaps = 9/381 (2%) Strand=Plus/Plus Query 19429 CCCAAAATTGTAAATGGTCCTGAAATCTTAAATAAATATGTAGGTCAATCGGAAGAAAAT 19488 ||||||||||| ||||||||||| || || || || ||||| ||| || ||||||||| Sbjct 179030 CCCAAAATTGTGAATGGTCCTGAGATTTTGAACAAGTATGTTGGTGCCTCTGAAGAAAAT 179089 Query 19489 GTACGACGTTTGTTTGCTGACGCTGAAGAAGAACAAAAA-CGTTTAGGGCGCAAAAGTTC 19547 | || | ||||| || || || | || | || || | | | | | || | Sbjct 179090 ATTAGAAACTA-TTTGCGGATGCGGAGGCTGAGTATAAGGCGCGTGGAGAGGAGTCGTCC 179148 Query 19548 TTTGCACATTATAATACTAGATGAATTGGACGCAATCTGTAAGCAAAGAGGTTC------ 19601 || ||| || || || | ||||| ||||| || ||||||||||| | || || Sbjct 179149 TT-GCATATCATCATTTTCGATGAGTTGGATGCGATCTGTAAGCAGCGTGGATCCAAGAA 179207 Query 19602 TGGTGTAAATGGAGTACATGACACTGTTGTCAATCAACTCCTGTCAAAATTAGACGGTGT 19661 | || || ||| || |||| |||||| || || ||| |||| ||| | || ||||| Sbjct 179208 CGATGGAACTGGTGTTGGAGACAGTGTTGTGAACCAGCTCTTGTCCAAAATGGATGGTGT 179267 Query 19662 TAACCAACTGAATAATATTTTAGTTATTGGCATGACTAATAGACTGGAATTAATAGACAG 19721 | | |||| |||||||| |||||||| ||||| || ||| |||| | || || Sbjct 179268 GGATCCTTTGAACAATATTTTGGTTATTGGAATGACCAACAGATTGGATATGATTGATGA 179327 Query 19722 CGCCTTATTACGACCCGGTCGGTTGGAAATAAAGATCGAAATTAACTTACCCGATGAATG 19781 || || | |||| ||||| | ||||| ||||| |||||| || || |||||| Sbjct 179328 GGCTTTGCTGAGACCGGGTCGTCTTGAAATCAAGATGGAAATTTCTTTGCCTGATGAAGC 179387 Query 19782 TGGACGTGTGGAAATTTTAAA 19802 || ||| | | ||||| || Sbjct 179388 AGGGCGTATTCAGATTTTGAA 179408 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397453883174185