Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhizoclosmatium_20globosum_20[genbank_20GCA_5F002104985.1_202017-04- 20] 437 sequences; 57,018,351 total letters Query= NC_027923.1 Length=132831 Score E Sequences producing significant alignments: (Bits) Value seq335 100 2e-16 seq30 100 2e-16 seq90 89.7 4e-13 seq2 89.7 4e-13 >seq335 Length=386496 Score = 100 bits (110), Expect = 2e-16 Identities = 148/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 27039 ACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCGTCTTCG 27098 ||||| || | ||||| || |||||||| |||||||| | | |||| | ||||| Sbjct 158334 ACCAAGTGAAGAGTAGACTCCTTTTGAATGTTGTAGTCAGAGAGGGTGCGGCCATCTTCC 158275 Query 27099 AGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCG 27158 | ||| || || ||| |||| | |||||| || || || || | || || ||||| | Sbjct 158274 AACTGCTTTCCAGCGAAAATCAAACGCTGCTGGTCTGGTGGGATTCCTTCCTTATCCTGG 158215 Query 27159 ATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTG 27218 |||||| || | | |||| | |||||| | | || ||||| | ||| || | || Sbjct 158214 ATCTTGGCCTTGACGTTTTCAATAGTGTCGGATGACTCGACTTCCAAAGTAATGGTCTTT 158155 Query 27219 CCCGTCAGAGTTTTCACAAAGATTTGCATA 27248 || || || || || ||||||||||||||| Sbjct 158154 CCAGTGAGGGTCTTGACAAAGATTTGCATA 158125 Score = 84.2 bits (92), Expect = 2e-11 Identities = 148/216 (69%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 27033 CGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCG 27092 ||||| || | || | ||||| ||||||||||| |||||||| | | | || | Sbjct 38996 CGCAAAACAAGGTGGAGAGTAGATTCTTTTTGAATGTTGTAGTCAGAGAGGGTTCGGCCA 39055 Query 27093 TCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTA 27152 ||||| | ||| || ||||| | || | |||||| || || || || | || || || Sbjct 39056 TCTTCCAACTGCTTTCCGGCAAAGATCAAACGCTGCTGGTCAGGTGGGATTCCTTCCTTG 39115 Query 27153 TCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATA 27212 || ||||||| || | | || | || || | || |||||| || ||||| || Sbjct 39116 TCCTGGATCTTGGCCTTGACATTCTCAATGGTATCGGAGGATTCAACCTCAAGAGTAATG 39175 Query 27213 GATTTGCCCGTCAGAGTTTTCACAAAGATTTGCATA 27248 | || || |||| ||| || |||||||| |||||| Sbjct 39176 GTCTTTCCAGTCAAAGTCTTGACAAAGATCTGCATA 39211 Score = 84.2 bits (92), Expect = 2e-11 Identities = 159/234 (68%), Gaps = 0/234 (0%) Strand=Plus/Minus Query 27018 TTGCCTCCGCGCAACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCG 27077 || ||||| || | ||||| || | || | ||||| || || ||||| |||||||| Sbjct 159118 TTTCCTCCACGAAGACGCAAGACAAGGTGGAGGGTAGACTCCTTCTGAATGTTGTAGTCA 159059 Query 27078 CTCATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGC 27137 | | | || ||||||| | ||| || || || | || | ||| || || || || Sbjct 159058 GAAAGGGTACGGCCGTCTTCCAACTGCTTTCCAGCAAAGATCAAACGTTGCTGGTCGGGT 158999 Query 27138 GGCACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCA 27197 || | || || ||||| ||||||| || | | | || | || || | || |||| Sbjct 158998 GGAATTCCTTCCTTATCCTGGATCTTGGCCTTAACGTTCTCAATGGTATCAGAGGATTCA 158939 Query 27198 ACTTCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCATAGCT 27251 ||||| | ||| || | || || |||| ||| || || |||||||||||| || Sbjct 158938 ACTTCCAAAGTGATGGTCTTTCCAGTCAAAGTCTTGACGAAGATTTGCATACCT 158885 >seq30 Length=118212 Score = 100 bits (110), Expect = 2e-16 Identities = 148/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 27039 ACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCGTCTTCG 27098 ||||| || | ||||| || |||||||| |||||||| | | |||| | ||||| Sbjct 47826 ACCAAGTGAAGAGTAGACTCCTTTTGAATGTTGTAGTCAGAGAGGGTGCGGCCATCTTCC 47767 Query 27099 AGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCG 27158 | ||| || |||||| |||| | |||||| || || || || | || || ||||| | Sbjct 47766 AACTGCTTTCCGGCGAAAATCAAACGCTGCTGGTCTGGTGGGATTCCTTCCTTATCCTGG 47707 Query 27159 ATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTG 27218 |||||| || | | |||| | |||||| | | || ||||| | ||| || | || Sbjct 47706 ATCTTGGCCTTGACGTTTTCAATAGTGTCGGATGACTCGACTTCCAAAGTAATGGTCTTT 47647 Query 27219 CCCGTCAGAGTTTTCACAAAGATTTGCATA 27248 || || || || || || |||||||||||| Sbjct 47646 CCAGTGAGGGTCTTGACGAAGATTTGCATA 47617 Score = 93.3 bits (102), Expect = 4e-14 Identities = 159/231 (69%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 27018 TTGCCTCCGCGCAACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCG 27077 || ||||| || | ||||| || | || | ||||| || || ||||| |||||||| Sbjct 48610 TTTCCTCCACGAAGACGCAAGACAAGGTGGAGGGTAGACTCCTTCTGAATGTTGTAGTCA 48551 Query 27078 CTCATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGC 27137 | | | || ||||||| | ||| || || || | || | ||| || || || || Sbjct 48550 GAAAGGGTACGGCCGTCTTCCAACTGCTTTCCAGCAAAGATCAAACGTTGCTGGTCGGGT 48491 Query 27138 GGCACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCA 27197 || | || || ||||| ||||||| || | | | || | || || | || |||| Sbjct 48490 GGAATTCCTTCCTTATCCTGGATCTTGGCCTTAACGTTCTCAATGGTATCAGAGGATTCA 48431 Query 27198 ACTTCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCATA 27248 ||||| | ||| |||| || || |||| ||| || ||||||||||||||| Sbjct 48430 ACTTCCAAAGTGATAGTCTTTCCAGTCAAAGTCTTGACAAAGATTTGCATA 48380 >seq90 Length=625778 Score = 89.7 bits (98), Expect = 4e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 27021 CCTCCGCGCAACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTC 27080 ||||| || | ||||| || | || | || || || || || || |||||||| Sbjct 499432 CCTCCACGGAGACGCAAGACGAGGTGGAGGGTCGACTCCTTCTGGATGTTGTAGTCAGAA 499373 Query 27081 ATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGC 27140 | | |||| |||| |||||||| || ||||| | ||||||||||| || || || || Sbjct 499372 AGGGTGCGGCCGTCCTCGAGCTGCTTTCCGGCAAAGATGAGACGCTGCTGGTCAGGTGGG 499313 Query 27141 ACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACT 27200 | ||||| || || ||||||| || | | |||| | |||||| | | || || Sbjct 499312 ATTCCCTCCTTGTCCTGGATCTTGGCCTTGACGTTTTCGATAGTGTCGGAAGACTCCACC 499253 Query 27201 TCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCAT 27247 || || || || | || ||||| || || || || ||||| ||||| Sbjct 499252 TCGAGGGTGATGGTCTTACCCGTGAGGGTCTTGACGAAGATCTGCAT 499206 >seq2 Length=712398 Score = 89.7 bits (98), Expect = 4e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 27021 CCTCCGCGCAACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTC 27080 ||||| || | ||||| || | || | || || || || ||||| |||||||| Sbjct 184670 CCTCCACGGAGACGCAAGACAAGGTGGAGGGTGGACTCCTTCTGAATGTTGTAGTCAGAA 184729 Query 27081 ATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGC 27140 | | | || |||| |||||||| || |||||| | ||||||||||| || || || || Sbjct 184730 AGGGTACGGCCGTCCTCGAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCAGGTGGG 184789 Query 27141 ACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACT 27200 | ||||| || || ||||||| || | | | || | ||||| | | ||||| Sbjct 184790 ATTCCCTCCTTGTCCTGGATCTTGGCCTTGACGTTCTCGATGGTGTCGGAAGACTCAACC 184849 Query 27201 TCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCAT 27247 || || || || | || ||||| || || || || || |||||||| Sbjct 184850 TCGAGGGTGATGGTCTTTCCCGTAAGGGTCTTGACGAAAATTTGCAT 184896 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 424932136825944