Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhizoclosmatium_20globosum_20[genbank_20GCA_5F002104985.1_202017-04- 20] 437 sequences; 57,018,351 total letters Query= NC_028092.1 Length=193301 Score E Sequences producing significant alignments: (Bits) Value seq38 154 2e-32 seq13 154 2e-32 seq157 114 2e-20 >seq38 Length=108757 Score = 154 bits (170), Expect = 2e-32 Identities = 384/576 (67%), Gaps = 23/576 (4%) Strand=Plus/Plus Query 118704 GGAAGGGCGATTGACGCCAGATTACACACAGAGGTCTCATCCTTATCAGTGTACTCTATA 118763 ||||||| ||| || || || ||||| || | | | || || | ||||||||| | Sbjct 87636 GGAAGGGAGATAGAAGCAAGGTTACAGACGGCGATTTCGTCAGGAGAAGTGTACTCGACG 87695 Query 118764 ATTTCCGTGCACAAGTTTGAACTCTTAATGGTGCCCAAGTTCTTTTGATTTGACTTTGTG 118823 ||||| ||||| | ||| | ||| |||||||||||||||| ||| || ||||| || Sbjct 87696 ATTTCTGTGCAAAGGTTACTGCACTTGATGGTGCCCAAGTTCTGTTGGTTAGACTTGCTG 87755 Query 118824 TTACACGCATCCTTGTAAAGCATGTATGGCGTCCCCGTCTCCGTTTGGGACTTGAGAATA 118883 ||||| ||||| ||||| | ||||||||| || || ||||| ||||| |||| | ||| Sbjct 87756 TTACAGGCATCTTTGTACAACATGTATGGGGTACCAGTCTCGGTTTGAGACTCAATAATG 87815 Query 118884 GCCTTCCAGA-CATCGGCAGC--TGGCACAGTGGCGTTGGCTCGCCCCTCTTC-CTCGTA 118939 || | ||| | | || | ||| || | | || ||| | |||| | | || || Sbjct 87816 GCGTACCAAAGCTTCTG-AGCCTTGATAACTTTACG--GGC-CAACCCTTTGCGTTCATA 87871 Query 118940 CTTTGTGTAGAGGGCTTCAAACTCTTCACCCACGGCCTCTGAGAGCCCTGGTGCCTTATC 118999 | || || |||||||||| ||| ||| | ||| | |||||| || | | Sbjct 87872 TGATTCATAAAGTGCTTCAAACTTTTCGCCCCAGCAGTCTTCCAACCCTGGCGCTTCACT 87931 Query 119000 TGGGCAGAAGAGAGACCATTGACCACCCTCCTCAACCCGCTTCATGAAGAGGTCTGGGAT 119059 ||| |||||||||||||| | |||| ||| || |||||||| || | ||| ||| Sbjct 87932 TGGACAGAAGAGAGACCAGTCACCATTGCTCTCCACACGCTTCATAAACAAGTCACAGAT 87991 Query 119060 CCAGAGCGCCGAGAAGAGATCCCGACAGCGAGCTTCTTCATCCCC------CTGATTGAG 119113 |||||| || |||| | || ||| ||| ||| || | || || ||||| Sbjct 87992 CCAGAGAGCATAGAACAAGTCTCGAGCGCGGTTTTCCTCTTTACCAGTATTCTTCTTGAG 88051 Query 119114 ACGCAACTCCAAAAAGTCCATGATATCCGCGTGCCACGGTTCCAGGTACACCGCGATTGA 119173 | || | || || | |||||| |||||||| || |||| ||| | || | | Sbjct 88052 A------TCAAGGAATTCAAAGATATCTGCGTGCCATGGCTCCAAGTAGATAGCAAAGGC 88105 Query 119174 CCCCTTACG---ACGACCAGCCTGGTTTACATACCTCGCAGTGGCGTTAAATACACGAAG 119230 ||| ||| || | || | ||||| | |||||| || || |||||||| Sbjct 88106 CCCGGGACGCTTGTTGCCTCCTTGATCCACATAGCGAGCAGTGTTATTGAAGACACGAAG 88165 Query 119231 CATTGGAATGATACCATCGGATTGGCCATTTGTCCC 119266 ||| |||||||| |||| || || || || || || Sbjct 88166 CATCGGAATGATTCCATTCGAATGTCCGTTGGTTCC 88201 >seq13 Length=692062 Score = 154 bits (170), Expect = 2e-32 Identities = 384/576 (67%), Gaps = 23/576 (4%) Strand=Plus/Plus Query 118704 GGAAGGGCGATTGACGCCAGATTACACACAGAGGTCTCATCCTTATCAGTGTACTCTATA 118763 ||||||| ||| || || || ||||| || | | | || || | ||||||||| | Sbjct 277432 GGAAGGGAGATAGAAGCAAGGTTACAGACGGCGATTTCGTCAGGAGAAGTGTACTCGACG 277491 Query 118764 ATTTCCGTGCACAAGTTTGAACTCTTAATGGTGCCCAAGTTCTTTTGATTTGACTTTGTG 118823 ||||| ||||| | ||| | ||| |||||||||||||||| ||| || ||||| || Sbjct 277492 ATTTCTGTGCAAAGGTTACTGCACTTGATGGTGCCCAAGTTCTGTTGGTTAGACTTGCTG 277551 Query 118824 TTACACGCATCCTTGTAAAGCATGTATGGCGTCCCCGTCTCCGTTTGGGACTTGAGAATA 118883 ||||| ||||| ||||| | ||||||||| || || ||||| ||||| |||| | ||| Sbjct 277552 TTACAGGCATCTTTGTACAACATGTATGGGGTACCAGTCTCGGTTTGAGACTCAATAATG 277611 Query 118884 GCCTTCCAGA-CATCGGCAGC--TGGCACAGTGGCGTTGGCTCGCCCCTCTTC-CTCGTA 118939 || | ||| | | || | ||| || | | || ||| | |||| | | || || Sbjct 277612 GCGTACCAAAGCTTCTG-AGCCTTGATAACTTTACG--GGC-CAACCCTTTGCGTTCATA 277667 Query 118940 CTTTGTGTAGAGGGCTTCAAACTCTTCACCCACGGCCTCTGAGAGCCCTGGTGCCTTATC 118999 | || || |||||||||| ||| ||| | ||| | |||||| || | | Sbjct 277668 TGATTCATAAAGTGCTTCAAACTTTTCGCCCCAGCAGTCTTCCAACCCTGGCGCTTCACT 277727 Query 119000 TGGGCAGAAGAGAGACCATTGACCACCCTCCTCAACCCGCTTCATGAAGAGGTCTGGGAT 119059 ||| |||||||||||||| | |||| ||| || |||||||| || | ||| ||| Sbjct 277728 TGGACAGAAGAGAGACCAGTCACCATTGCTCTCCACACGCTTCATAAACAAGTCACAGAT 277787 Query 119060 CCAGAGCGCCGAGAAGAGATCCCGACAGCGAGCTTCTTCATCCCC------CTGATTGAG 119113 |||||| || |||| | || ||| ||| ||| || | || || ||||| Sbjct 277788 CCAGAGAGCATAGAACAAGTCTCGAGCGCGGTTTTCCTCTTTACCAGTATTCTTCTTGAG 277847 Query 119114 ACGCAACTCCAAAAAGTCCATGATATCCGCGTGCCACGGTTCCAGGTACACCGCGATTGA 119173 | || | || || | |||||| |||||||| || |||| ||| | || | | Sbjct 277848 A------TCAAGGAATTCAAAGATATCTGCGTGCCATGGCTCCAAGTAGATAGCAAAGGC 277901 Query 119174 CCCCTTACG---ACGACCAGCCTGGTTTACATACCTCGCAGTGGCGTTAAATACACGAAG 119230 ||| ||| || | || | ||||| | |||||| || || |||||||| Sbjct 277902 CCCGGGACGCTTGTTGCCTCCTTGATCCACATAGCGAGCAGTGTTATTGAAGACACGAAG 277961 Query 119231 CATTGGAATGATACCATCGGATTGGCCATTTGTCCC 119266 ||| |||||||| |||| || || || || || || Sbjct 277962 CATCGGAATGATTCCATTCGAATGTCCGTTGGTTCC 277997 >seq157 Length=558770 Score = 114 bits (126), Expect = 2e-20 Identities = 160/222 (72%), Gaps = 2/222 (1%) Strand=Plus/Plus Query 130016 GCAAACTCCTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCT 130075 ||||| || |||||| |||||||| | ||| ||||| ||||| ||||| || ||| Sbjct 322571 GCAAAGTCAGTGTGGAGGCCCTCGTCTCTGGAAATGAGCTCATTAGAGAATGTAAGGCCT 322630 Query 130076 GGCATGAGACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATC 130135 ||||| | || |||||||| | |||||| || | | ||| || ||||||||||| || Sbjct 322631 GGCATCAAGCCACGCTTCTTGAGCCAGAAGATGGAAGCAAAGGAACCAGAGAAGAAAATT 322690 Query 130136 CCCTCCACACACGCGAACGCAAAGAGACGCTCAGCAAAGGAGCGGGACTTTGTATCAAAC 130195 |||||||| ||||| |||| || || || || |||||| ||||| | | | Sbjct 322691 CCCTCCACGACGGCGAAAGCAACAAGCCGTTCTGCGAAGGAGGAAGACTTGTCAGAGATC 322750 Query 130196 CACTTCATCGCCCACTGCGCCTT-TTTCTCGATACACGGGAC 130236 ||||| | ||||| | ||||| ||||| ||||| || || Sbjct 322751 CACTTGAGAGCCCAATCGGCCTTCTTTCT-AATACATGGAAC 322791 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 618431821797720