Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhizoclosmatium_20globosum_20[genbank_20GCA_5F002104985.1_202017-04- 20] 437 sequences; 57,018,351 total letters Query= NC_028093.1 Length=182309 Score E Sequences producing significant alignments: (Bits) Value seq38 152 6e-32 seq13 152 6e-32 seq157 118 1e-21 >seq38 Length=108757 Score = 152 bits (168), Expect = 6e-32 Identities = 714/1118 (64%), Gaps = 63/1118 (6%) Strand=Plus/Minus Query 104513 GGGACAAATGGTCAATCAGATGGTATTATTCCAATGCTTCGCGTATTTAACGCCACAGCG 104572 || || || || || || |||| || ||||| |||||||| || || || ||| || Sbjct 88201 GGAACCAACGGACATTCGAATGGAATCATTCCGATGCTTCGTGTCTTCAATAACACTGCT 88142 Query 104573 CGCTATGTAAATCAAGCTGG------GCGTCGAAAGGGATCTATCGCAGTCTATCTTGAG 104626 |||||||| |||||| || ||||| ||| || | || |||| | ||| Sbjct 88141 CGCTATGTGGATCAAGGAGGCAACAAGCGTCCC--GGGGCCTTT-GCTATCTACTTGGAG 88085 Query 104627 CCATGGCACGCGGATATCATGGAGTTCCTTGAGTTGCGTCTCAACCAA------GGTGAC 104680 ||||||||||| |||||| | || |||||||| |||||| | ||| | Sbjct 88084 CCATGGCACGCAGATATCTTTGAATTCCTTGA------TCTCAAGAAGAATACTGGTAAA 88031 Query 104681 GAGGAGG--CGCGGTGCCGCGATCTCTTCTCCGCTCTCTGGATTCCAGATCTCTTCATGA 104738 ||||| |||| | || || | |||| ||||||||||| || | || |||| Sbjct 88030 GAGGAAAACCGCGCT--CGAGACTTGTTCTATGCTCTCTGGATCTGTGACTTGTTTATGA 87973 Query 104739 AGAGAGTTGAGGAGAGTGGCAATTGGTCTCTCTTTTGTCCAGACAAGGCACCTGGTCTCT 104798 || | || ||| | ||| | ||||||||||| |||||| | || || || | Sbjct 87972 AGCGTGTGGAGAGCAATGGTGACTGGTCTCTCTTCTGTCCAAGTGAAGCGCCAGGGTTGG 87913 Query 104799 CCGA-TGCCGTGGGTGAGGAGTTTGAAGCCCTTTACACAAAGTACGAGGAAGAAGGTCGG 104857 || ||| | ||| || |||||||||| ||||| | || || |||| | Sbjct 87912 AAGACTGCTG-GGGCGAAAAGTTTGAAGCACTTTATGAATCATATGAACGCAAAGGGTTG 87854 Query 104858 GCGACTGCGACGGTGCCA--GCTGCCGATG-TGTGGAAAGCTATTCTCAAGTCTCAAACC 104914 || | | | | | || ||| | || | | ||| | || ||| | ||||||||||| Sbjct 87853 GC--CCGTAAAGTTATCAAGGCT-CAGAAGCTTTGGTACGCCATTATTGAGTCTCAAACC 87797 Query 104915 GAGACTGGTACACCATACATGCTTTACAAAGACGCCTGTAACCAAAAGAGTAATCAAAAG 104974 ||||||||||| ||||||||| | |||||||| ||||||||| ||| ||| ||| || Sbjct 87796 GAGACTGGTACCCCATACATGTTGTACAAAGATGCCTGTAACAGCAAGTCTAACCAACAG 87737 Query 104975 AATTTGGGTGTGATCAAGAGTTCCAATCTCTGTACAGAAATCTTGGAATTTACAGACAAA 105034 || ||||| |||||| | || || || ||||||||| | || | || Sbjct 87736 AACTTGGGCACCATCAAGTGCAGTAACCTTTGCACAGAAATCGTCGAGTACACTTCTCCT 87677 Query 105035 GATGAGACGGCTGTGTGTAACCTCGCATCAATCGCTCTCCCCAAGTATGTGGATCCAGAG 105094 || || | || || |||||||| || || ||| | || || || | || | | Sbjct 87676 GACGAAATCGCCGTCTGTAACCTTGCTTCTATCTCCCTTCC--AGCCTTTG----TTGTG 87623 Query 105095 ACAAAGAC-ATTT--GATTATGAAAAACTCCACGAAGTTACGAAAACTGTCACCAAAAAC 105151 | ||||| | || || | ||| ||||||| | | || || ||| | ||||| ||| Sbjct 87622 AACAAGACTACTTACGACTTTGAGAAACTCCGCCAGGTCACTAAAGTCATGACCAAGAAC 87563 Query 105152 CTAAACAGAGTTATTGATAGAAATTTTTACCC---CGTTGAGACTGCTCGTAAATCTAAT 105208 | |||| | ||||| | ||||| ||||| | ||||| || || || || Sbjct 87562 TTGAACAAGATCATTGACATTAATTTCTACCCTGTCATTGAG---GCCAAGAACTCAAAC 87506 Query 105209 ATGAGACACCGTCCAATTGGTCTCGGTGTTCAGGGTCTCGCGGATGTATTCATTCTTTGT 105268 ||| | ||||| || || ||||| || ||||| || || || |||| ||||| Sbjct 87505 ATGCGTCACCGACCTATCGGTCTTGGAGTTCAAGGACTTGCCGATGCTTTCATCAAGATG 87446 Query 105269 CGCCACGCATTTGATTCCGACGAAGCGAAGGAAATCAATGCGCGCATATTTGAGACCATG 105328 || | |||| || ||||| | |||||| || | || | || ||||| | |||| Sbjct 87445 CGTCTTCCATTCGACTCCGAAGGAGCGAAAGAGCTGAACAAGAAGATCTTTGAAAACATG 87386 Query 105329 TATCACGCCGCTCTTGAGGCGAGTTCAGAGTTGGCAGAGGTTGATGGTCCATATGAAACC 105388 || |||| || | ||||| | ||| | || || || |||||||| ||| Sbjct 87385 TACTACGCTGCCGTGGAGGCTTCGTGTGAGATTGCCGAAAAAGACGGTCCATACTCAACT 87326 Query 105389 TTTGAGGGTTCTCCAGCTTCACAAGGGGTGCTTCAATTTGATATGTGGGAAGGTGA---G 105445 | || || ||| ||| |||| | | ||| || | ||| | ||| | Sbjct 87325 TACGAAGGAAGCCCAATGTCAAAAGGACAGTTGCAACCAGACCTTTGGAACATTGATTTG 87266 Query 105446 ACCAAGCTTCACTACGACTGGGAAGCTCTCAAGGAACGCATCAAGG------AGAAGGGT 105499 | ||| | | | |||||||| ||||| ||| |||| || | ||| Sbjct 87265 AGCAACTCTGATTTGGACTGGGATGCTCT------TCGCGCTAAGGTGGCCAAGTACGGT 87212 Query 105500 CTTCGTAACAGTCTCCTCATGGCTCCAATGCCAACAGCCTCCACCGCACAAATCTTGGGT 105559 | || ||| | | | ||||||||||||||||| || || || | || || | ||| Sbjct 87211 GTCCGAAACTCTTTGTTGATGGCTCCAATGCCAACTGCATCGACATCTCAGATTCTTGGT 87152 Query 105560 AATAATGAATGCTTTGAACCCTACACGACGAACATCTA 105597 || || || || |||||||| ||||| | || ||||| Sbjct 87151 AACAACGAGTGTTTTGAACCGTACACAAGCAATATCTA 87114 >seq13 Length=692062 Score = 152 bits (168), Expect = 6e-32 Identities = 714/1118 (64%), Gaps = 63/1118 (6%) Strand=Plus/Minus Query 104513 GGGACAAATGGTCAATCAGATGGTATTATTCCAATGCTTCGCGTATTTAACGCCACAGCG 104572 || || || || || || |||| || ||||| |||||||| || || || ||| || Sbjct 277997 GGAACCAACGGACATTCGAATGGAATCATTCCGATGCTTCGTGTCTTCAATAACACTGCT 277938 Query 104573 CGCTATGTAAATCAAGCTGG------GCGTCGAAAGGGATCTATCGCAGTCTATCTTGAG 104626 |||||||| |||||| || ||||| ||| || | || |||| | ||| Sbjct 277937 CGCTATGTGGATCAAGGAGGCAACAAGCGTCCC--GGGGCCTTT-GCTATCTACTTGGAG 277881 Query 104627 CCATGGCACGCGGATATCATGGAGTTCCTTGAGTTGCGTCTCAACCAA------GGTGAC 104680 ||||||||||| |||||| | || |||||||| |||||| | ||| | Sbjct 277880 CCATGGCACGCAGATATCTTTGAATTCCTTGA------TCTCAAGAAGAATACTGGTAAA 277827 Query 104681 GAGGAGG--CGCGGTGCCGCGATCTCTTCTCCGCTCTCTGGATTCCAGATCTCTTCATGA 104738 ||||| |||| | || || | |||| ||||||||||| || | || |||| Sbjct 277826 GAGGAAAACCGCGCT--CGAGACTTGTTCTATGCTCTCTGGATCTGTGACTTGTTTATGA 277769 Query 104739 AGAGAGTTGAGGAGAGTGGCAATTGGTCTCTCTTTTGTCCAGACAAGGCACCTGGTCTCT 104798 || | || ||| | ||| | ||||||||||| |||||| | || || || | Sbjct 277768 AGCGTGTGGAGAGCAATGGTGACTGGTCTCTCTTCTGTCCAAGTGAAGCGCCAGGGTTGG 277709 Query 104799 CCGA-TGCCGTGGGTGAGGAGTTTGAAGCCCTTTACACAAAGTACGAGGAAGAAGGTCGG 104857 || ||| | ||| || |||||||||| ||||| | || || |||| | Sbjct 277708 AAGACTGCTG-GGGCGAAAAGTTTGAAGCACTTTATGAATCATATGAACGCAAAGGGTTG 277650 Query 104858 GCGACTGCGACGGTGCCA--GCTGCCGATG-TGTGGAAAGCTATTCTCAAGTCTCAAACC 104914 || | | | | | || ||| | || | | ||| | || ||| | ||||||||||| Sbjct 277649 GC--CCGTAAAGTTATCAAGGCT-CAGAAGCTTTGGTACGCCATTATTGAGTCTCAAACC 277593 Query 104915 GAGACTGGTACACCATACATGCTTTACAAAGACGCCTGTAACCAAAAGAGTAATCAAAAG 104974 ||||||||||| ||||||||| | |||||||| ||||||||| ||| ||| ||| || Sbjct 277592 GAGACTGGTACCCCATACATGTTGTACAAAGATGCCTGTAACAGCAAGTCTAACCAACAG 277533 Query 104975 AATTTGGGTGTGATCAAGAGTTCCAATCTCTGTACAGAAATCTTGGAATTTACAGACAAA 105034 || ||||| |||||| | || || || ||||||||| | || | || Sbjct 277532 AACTTGGGCACCATCAAGTGCAGTAACCTTTGCACAGAAATCGTCGAGTACACTTCTCCT 277473 Query 105035 GATGAGACGGCTGTGTGTAACCTCGCATCAATCGCTCTCCCCAAGTATGTGGATCCAGAG 105094 || || | || || |||||||| || || ||| | || || || | || | | Sbjct 277472 GACGAAATCGCCGTCTGTAACCTTGCTTCTATCTCCCTTCC--AGCCTTTG----TTGTG 277419 Query 105095 ACAAAGAC-ATTT--GATTATGAAAAACTCCACGAAGTTACGAAAACTGTCACCAAAAAC 105151 | ||||| | || || | ||| ||||||| | | || || ||| | ||||| ||| Sbjct 277418 AACAAGACTACTTACGACTTTGAGAAACTCCGCCAGGTCACTAAAGTCATGACCAAGAAC 277359 Query 105152 CTAAACAGAGTTATTGATAGAAATTTTTACCC---CGTTGAGACTGCTCGTAAATCTAAT 105208 | |||| | ||||| | ||||| ||||| | ||||| || || || || Sbjct 277358 TTGAACAAGATCATTGACATTAATTTCTACCCTGTCATTGAG---GCCAAGAACTCAAAC 277302 Query 105209 ATGAGACACCGTCCAATTGGTCTCGGTGTTCAGGGTCTCGCGGATGTATTCATTCTTTGT 105268 ||| | ||||| || || ||||| || ||||| || || || |||| ||||| Sbjct 277301 ATGCGTCACCGACCTATCGGTCTTGGAGTTCAAGGACTTGCCGATGCTTTCATCAAGATG 277242 Query 105269 CGCCACGCATTTGATTCCGACGAAGCGAAGGAAATCAATGCGCGCATATTTGAGACCATG 105328 || | |||| || ||||| | |||||| || | || | || ||||| | |||| Sbjct 277241 CGTCTTCCATTCGACTCCGAAGGAGCGAAAGAGCTGAACAAGAAGATCTTTGAAAACATG 277182 Query 105329 TATCACGCCGCTCTTGAGGCGAGTTCAGAGTTGGCAGAGGTTGATGGTCCATATGAAACC 105388 || |||| || | ||||| | ||| | || || || |||||||| ||| Sbjct 277181 TACTACGCTGCCGTGGAGGCTTCGTGTGAGATTGCCGAAAAAGACGGTCCATACTCAACT 277122 Query 105389 TTTGAGGGTTCTCCAGCTTCACAAGGGGTGCTTCAATTTGATATGTGGGAAGGTGA---G 105445 | || || ||| ||| |||| | | ||| || | ||| | ||| | Sbjct 277121 TACGAAGGAAGCCCAATGTCAAAAGGACAGTTGCAACCAGACCTTTGGAACATTGATTTG 277062 Query 105446 ACCAAGCTTCACTACGACTGGGAAGCTCTCAAGGAACGCATCAAGG------AGAAGGGT 105499 | ||| | | | |||||||| ||||| ||| |||| || | ||| Sbjct 277061 AGCAACTCTGATTTGGACTGGGATGCTCT------TCGCGCTAAGGTGGCCAAGTACGGT 277008 Query 105500 CTTCGTAACAGTCTCCTCATGGCTCCAATGCCAACAGCCTCCACCGCACAAATCTTGGGT 105559 | || ||| | | | ||||||||||||||||| || || || | || || | ||| Sbjct 277007 GTCCGAAACTCTTTGTTGATGGCTCCAATGCCAACTGCATCGACATCTCAGATTCTTGGT 276948 Query 105560 AATAATGAATGCTTTGAACCCTACACGACGAACATCTA 105597 || || || || |||||||| ||||| | || ||||| Sbjct 276947 AACAACGAGTGTTTTGAACCGTACACAAGCAATATCTA 276910 >seq157 Length=558770 Score = 118 bits (130), Expect = 1e-21 Identities = 162/224 (72%), Gaps = 2/224 (1%) Strand=Plus/Minus Query 94733 CAGTTCCGTGTATTCAAAAGAAAGCGGATTGGGCTATGAAGTGGTTTGATACAAAGTCGC 94792 ||||||| |||||| |||||| || ||||||||| | |||||| | | ||||| Sbjct 322793 CAGTTCCATGTATTAGAAAGAAGGCCGATTGGGCTCTCAAGTGGATCTCTGACAAGTCTT 322734 Query 94793 GTTCCTTTGCTGAGCGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTGGTT 94852 ||||| || || || || | || || || || ||||| || ||||||||||||| Sbjct 322733 CCTCCTTCGCAGAACGGCTTGTTGCTTTCGCCGTCGTGGAGGGAATTTTCTTCTCTGGTT 322674 Query 94853 CCTTCTGCG-CTATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCTCC 94911 |||| ||| | || | |||||||||||||| || | |||||||| || ||||| Sbjct 322673 CCTT-TGCTTCCATCTTCTGGCTCAAGAAGCGTGGCTTGATGCCAGGCCTTACATTCTCT 322615 Query 94912 AACGAGCTTATCTCTCGTGACGAGGGACTCCACCAAGAGTTTGC 94955 || ||||| || || | |||||||| |||||| || ||||| Sbjct 322614 AATGAGCTCATTTCCAGAGACGAGGGCCTCCACACTGACTTTGC 322571 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 583257613937880