Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhizoclosmatium_20globosum_20[genbank_20GCA_5F002104985.1_202017-04- 20] 437 sequences; 57,018,351 total letters Query= NC_028108.1 Length=171454 Score E Sequences producing significant alignments: (Bits) Value seq157 123 3e-23 seq38 91.5 2e-13 seq13 91.5 2e-13 >seq157 Length=558770 Score = 123 bits (136), Expect = 3e-23 Identities = 298/440 (68%), Gaps = 11/440 (3%) Strand=Plus/Minus Query 59970 TCATTTGCACAACGTCTCATAGCTTTTGCATGCGTGGAAGGAATCTTCTTCTCTGGCTCG 60029 || || ||| |||| || | ||||| || |||||| ||||| ||||||||||| || Sbjct 322731 TCCTTCGCAGAACGGCTTGTTGCTTTCGCCGTCGTGGAGGGAATTTTCTTCTCTGGTTCC 322672 Query 60030 TTCTGTGCTATTTTCTGGCTCAAAAAGCGTGGCCTCATGCCGGGCCTGAGTTTCTCCAAC 60089 || | | || ||||||||||| ||||||||| | ||||| ||||| | ||||| || Sbjct 322671 TTTGCTTCCATCTTCTGGCTCAAGAAGCGTGGCTTGATGCCAGGCCTTACATTCTCTAAT 322612 Query 60090 GAGCTGATTTCCCGGGACGAGGGCCTCCATCAGGAGTTTGCAGTGACGCTCTATTCACAC 60149 ||||| |||||| | |||||||||||||| || ||||| || | | | || | | Sbjct 322611 GAGCTCATTTCCAGAGACGAGGGCCTCCACACTGACTTTGC-TTGTC-TTTTGTTTA-GC 322555 Query 60150 CTATTGGAAAAATGCCCTTCCAAGGATA--TTCACAAGATTGT-TCAGTGGGCTTGTGAA 60206 | ||| | || || | |||| | |||||||||| || | ||| || Sbjct 322554 TTGTTGAAGAATAAGCCAACAGTCGATACGTCTACAAGATTGTCTCTG-AAGCTGTCGAG 322496 Query 60207 GTGGAGAGCGAGTTCATCACAGAAGCGCTTCCATGCAAACTCATAGGTATGGACGCTGGA 60266 | ||| || || | | || || || || ||||| || || ||| || ||| Sbjct 322495 CTTGAGCAAGAATTTTTGATTGACGCCCTCCCTGTGAAACTGATTGGAATGAACTCTGAC 322436 Query 60267 GAAATGACGCAGTACATTCAGTTTGTCGCGGACCGCCTCATGGCCCAGTTTGGAGAAGGA 60326 |||| ||||||||| | || ||||| ||| | || ||| ||||| | | Sbjct 322435 TTGATGAGCCAGTACATTGAATTCGTCGCAGACAGACTTTTGG-TTTCTTTGG-GCTGTC 322378 Query 60327 CCAA--TTTACGGCGTGAATAACCCTTTCGACTGGATGGAGACCATCTCGTTGGAAGGGA 60384 | || | ||| ||| | ||||| || |||| ||||| |||||| ||| |||| | Sbjct 322377 CTAAGCTCTACAACGTCGAGAACCCCTTTGACTTCATGGATCTCATCTCCTTGCAAGGAA 322318 Query 60385 AGACCAACTTCTTTGAGAAG 60404 |||||||||||||||||||| Sbjct 322317 AGACCAACTTCTTTGAGAAG 322298 >seq38 Length=108757 Score = 91.5 bits (100), Expect = 2e-13 Identities = 282/431 (65%), Gaps = 13/431 (3%) Strand=Plus/Plus Query 78783 CAGGGCCGCGTGGTACACAGCCTCGAAGATGCCCTTGTTGAGCTCG--CGCGCCTTGGTC 78840 || ||| |||| ||||| || ||||| |||||| ||||| ||| |||| | Sbjct 87371 CACGGCAGCGTAGTACATGTTTTCAAAGATCTTCTTGTTCAGCTCTTTCGCTCCTTCGGA 87430 Query 78841 TCGTCGAACGAAAGGCCGAGCATCATGAAGACATCGGCCAGGCCCTGGACGCCGATAGCG 78900 |||||| | ||| | | | | ||||| ||||||| || || || || || | | || Sbjct 87431 --GTCGAATGGAAGACGCATCTTGATGAAAGCATCGGCAAGTCCTTGAACTCCAAGACCG 87488 Query 78901 ATCGGTCGGTGGCGCATGTT---GCTCTTTCGGGCCGCCTCGGTCGGGTAAAAGTTCCGA 78957 || |||||||| |||||||| | |||| |||| | | ||||| || || Sbjct 87489 ATAGGTCGGTGACGCATGTTTGAGTTCTT---GGCCTCAATGACAGGGTAGAAATTAATG 87545 Query 78958 TCGATGACGCGGTTCAGGTTACGCGTGACGACCCGAGTCACCTCGTACAATTTGGCGAAA 79017 || |||| ||||| ||| || | ||| ||| |||| | | ||| | || Sbjct 87546 TCAATGATCTTGTTCAAGTTCTTGGTCATGACTTTAGTGACCTGGCGGAGTTTCTCAAAG 87605 Query 79018 TCAAAATGATTTCCTTTGATGA--AAGTC-GGTAGGCACAGCGATGCCAGGTTGCACACG 79074 || || | | || | | ||| | || ||| | | || || ||||| || ||| Sbjct 87606 TCGTAAGTAGTCTTGTTCACAACAAAGGCTGGAAGGGAGATAGAAGCAAGGTTACAGACG 87665 Query 79075 GCCGTCTCGTCCGGGCTAGAAACCTCGATGATTTCTGTGCACAAATTAGACGACTTGATG 79134 || | ||||| || || ||||| |||||||||||| | ||| |||||||| Sbjct 87666 GCGATTTCGTCAGGAGAAGTGTACTCGACGATTTCTGTGCAAAGGTTACTGCACTTGATG 87725 Query 79135 GTGCCGATGTTCTTCTGGTTGCTCTTCTCGTTACAGGCGTCCTTGTAGCACATGTACGGC 79194 ||||| | ||||| ||||| ||| ||||||||| || ||||| ||||||| || Sbjct 87726 GTGCCCAAGTTCTGTTGGTTAGACTTGCTGTTACAGGCATCTTTGTACAACATGTATGGG 87785 Query 79195 GTCCCGGTCTC 79205 || || ||||| Sbjct 87786 GTACCAGTCTC 87796 >seq13 Length=692062 Score = 91.5 bits (100), Expect = 2e-13 Identities = 282/431 (65%), Gaps = 13/431 (3%) Strand=Plus/Plus Query 78783 CAGGGCCGCGTGGTACACAGCCTCGAAGATGCCCTTGTTGAGCTCG--CGCGCCTTGGTC 78840 || ||| |||| ||||| || ||||| |||||| ||||| ||| |||| | Sbjct 277167 CACGGCAGCGTAGTACATGTTTTCAAAGATCTTCTTGTTCAGCTCTTTCGCTCCTTCGGA 277226 Query 78841 TCGTCGAACGAAAGGCCGAGCATCATGAAGACATCGGCCAGGCCCTGGACGCCGATAGCG 78900 |||||| | ||| | | | | ||||| ||||||| || || || || || | | || Sbjct 277227 --GTCGAATGGAAGACGCATCTTGATGAAAGCATCGGCAAGTCCTTGAACTCCAAGACCG 277284 Query 78901 ATCGGTCGGTGGCGCATGTT---GCTCTTTCGGGCCGCCTCGGTCGGGTAAAAGTTCCGA 78957 || |||||||| |||||||| | |||| |||| | | ||||| || || Sbjct 277285 ATAGGTCGGTGACGCATGTTTGAGTTCTT---GGCCTCAATGACAGGGTAGAAATTAATG 277341 Query 78958 TCGATGACGCGGTTCAGGTTACGCGTGACGACCCGAGTCACCTCGTACAATTTGGCGAAA 79017 || |||| ||||| ||| || | ||| ||| |||| | | ||| | || Sbjct 277342 TCAATGATCTTGTTCAAGTTCTTGGTCATGACTTTAGTGACCTGGCGGAGTTTCTCAAAG 277401 Query 79018 TCAAAATGATTTCCTTTGATGA--AAGTC-GGTAGGCACAGCGATGCCAGGTTGCACACG 79074 || || | | || | | ||| | || ||| | | || || ||||| || ||| Sbjct 277402 TCGTAAGTAGTCTTGTTCACAACAAAGGCTGGAAGGGAGATAGAAGCAAGGTTACAGACG 277461 Query 79075 GCCGTCTCGTCCGGGCTAGAAACCTCGATGATTTCTGTGCACAAATTAGACGACTTGATG 79134 || | ||||| || || ||||| |||||||||||| | ||| |||||||| Sbjct 277462 GCGATTTCGTCAGGAGAAGTGTACTCGACGATTTCTGTGCAAAGGTTACTGCACTTGATG 277521 Query 79135 GTGCCGATGTTCTTCTGGTTGCTCTTCTCGTTACAGGCGTCCTTGTAGCACATGTACGGC 79194 ||||| | ||||| ||||| ||| ||||||||| || ||||| ||||||| || Sbjct 277522 GTGCCCAAGTTCTGTTGGTTAGACTTGCTGTTACAGGCATCTTTGTACAACATGTATGGG 277581 Query 79195 GTCCCGGTCTC 79205 || || ||||| Sbjct 277582 GTACCAGTCTC 277592 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 548521803683280