Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhizoclosmatium_20globosum_20[genbank_20GCA_5F002104985.1_202017-04- 20] 437 sequences; 57,018,351 total letters Query= NC_028491.1 Length=98392 Score E Sequences producing significant alignments: (Bits) Value seq90 100 2e-16 seq2 100 2e-16 seq335 93.3 3e-14 seq30 89.7 3e-13 >seq90 Length=625778 Score = 100 bits (110), Expect = 2e-16 Identities = 155/219 (71%), Gaps = 2/219 (1%) Strand=Plus/Minus Query 34489 AGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGC 34548 |||||||| || | ||||| || |||||| || ||||| || || ||||| || || Sbjct 499423 AGACGCAAGACGAGGTGGAGGGTCGACTCCTTCTGGATGTTGTAGTCAGAAAGGGTGCGG 499364 Query 34549 TCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCC 34608 |||| || || || || |||||||| || | |||||| ||||| || || | ||||||| Sbjct 499363 CCGTCCTCGAGCTGCTTTCCGGCAAAGATGAGACGCTGCTGGTCAGGTGGGATTCCCTCC 499304 Query 34609 TTGTCTGTGATCTTTTGTTTTAACG-ATAAAATTGTGTCTTCGCTCTCCACTTCCACGGT 34667 ||||| |||| || | || ||| | || ||||| |||||| || | ||| Sbjct 499303 TTGTCCTGGATC-TTGGCCTTGACGTTTTCGATAGTGTCGGAAGACTCCACCTCGAGGGT 499245 Query 34668 TATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 || || ||||| || | || || || || |||||||| Sbjct 499244 GATGGTCTTACCCGTGAGGGTCTTGACGAAGATCTGCAT 499206 >seq2 Length=712398 Score = 100 bits (110), Expect = 2e-16 Identities = 157/222 (71%), Gaps = 2/222 (1%) Strand=Plus/Plus Query 34489 AGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGC 34548 |||||||| || | ||||| ||| |||||| |||||||| || || ||||| || || Sbjct 184679 AGACGCAAGACAAGGTGGAGGGTGGACTCCTTCTGAATGTTGTAGTCAGAAAGGGTACGG 184738 Query 34549 TCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCC 34608 |||| || || || || ||||| || || | |||||| ||||| || || | ||||||| Sbjct 184739 CCGTCCTCGAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCAGGTGGGATTCCCTCC 184798 Query 34609 TTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCACTTCCACGGT 34667 ||||| |||| || | || ||| | || ||||| ||| || || | ||| Sbjct 184799 TTGTCCTGGATC-TTGGCCTTGACGTTCTCGATGGTGTCGGAAGACTCAACCTCGAGGGT 184857 Query 34668 TATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCATGTT 34709 || || || || || | || || || ||||| |||||||| Sbjct 184858 GATGGTCTTTCCCGTAAGGGTCTTGACGAAAATTTGCATGTT 184899 >seq335 Length=386496 Score = 93.3 bits (102), Expect = 3e-14 Identities = 101/134 (75%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 34489 AGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGC 34548 |||||||| || | |||||||| || ||||||||||| || || || || ||||| Sbjct 38993 AGACGCAAAACAAGGTGGAGAGTAGATTCTTTTTGAATGTTGTAGTCAGAGAGGGTTCGG 39052 Query 34549 TCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCC 34608 | ||||| | || || |||||||| || |||||||| ||||| || || | ||| ||| Sbjct 39053 CCATCTTCCAACTGCTTTCCGGCAAAGATCAAACGCTGCTGGTCAGGTGGGATTCCTTCC 39112 Query 34609 TTGTCTGTGATCTT 34622 ||||| |||||| Sbjct 39113 TTGTCCTGGATCTT 39126 Score = 89.7 bits (98), Expect = 3e-13 Identities = 158/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539 || || | |||||| | ||||| || ||||| ||||||||||||||| || || || Sbjct 158352 CCACCACGAAGACGAAGGACCAAGTGAAGAGTAGACTCCTTTTGAATGTTGTAGTCAGAG 158293 Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599 || || || | ||||| | || || || || || || |||||||| ||||| || || Sbjct 158292 AGGGTGCGGCCATCTTCCAACTGCTTTCCAGCGAAAATCAAACGCTGCTGGTCTGGTGGG 158233 Query 34600 ACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACG-ATAAAATTGTGTCTTCGCTCTCCAC 34658 | ||| ||||| || |||| || | || ||| | ||| ||||| ||| || Sbjct 158232 ATTCCTTCCTTATCCTGGATC-TTGGCCTTGACGTTTTCAATAGTGTCGGATGACTCGAC 158174 Query 34659 TTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 ||||| || || || || || || | || || ||||| || ||||| Sbjct 158173 TTCCAAAGTAATGGTCTTTCCAGTGAGGGTCTTGACAAAGATTTGCAT 158126 >seq30 Length=118212 Score = 89.7 bits (98), Expect = 3e-13 Identities = 158/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539 || || | |||||| | ||||| || ||||| ||||||||||||||| || || || Sbjct 47844 CCACCACGAAGACGAAGGACCAAGTGAAGAGTAGACTCCTTTTGAATGTTGTAGTCAGAG 47785 Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599 || || || | ||||| | || || ||||| || || |||||||| ||||| || || Sbjct 47784 AGGGTGCGGCCATCTTCCAACTGCTTTCCGGCGAAAATCAAACGCTGCTGGTCTGGTGGG 47725 Query 34600 ACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACG-ATAAAATTGTGTCTTCGCTCTCCAC 34658 | ||| ||||| || |||| || | || ||| | ||| ||||| ||| || Sbjct 47724 ATTCCTTCCTTATCCTGGATC-TTGGCCTTGACGTTTTCAATAGTGTCGGATGACTCGAC 47666 Query 34659 TTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 ||||| || || || || || || | || || || || || ||||| Sbjct 47665 TTCCAAAGTAATGGTCTTTCCAGTGAGGGTCTTGACGAAGATTTGCAT 47618 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 314727923769821