Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhizoclosmatium_20globosum_20[genbank_20GCA_5F002104985.1_202017-04- 20] 437 sequences; 57,018,351 total letters Query= NC_028636.1 Length=135952 Score E Sequences producing significant alignments: (Bits) Value seq335 145 7e-30 seq30 127 2e-24 seq2 105 6e-18 seq90 104 2e-17 >seq335 Length=386496 Score = 145 bits (160), Expect = 7e-30 Identities = 170/230 (74%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| ||||| || ||| |||| || ||| | ||||||||||| || ||| | ||| Sbjct 39210 ATGCAGATCTTTGTCAAGACTTTGACTGGAAAGACCATTACTCTTGAGGTTGAATCCTCC 39151 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 || | ||||||| ||||| || || || ||||| ||||| || ||||| || || Sbjct 39150 GATACCATTGAGAATGTCAAGGCCAAGATCCAGGACAAGGAAGGAATCCCACCTGACCAG 39091 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 |||||||| || | ||||| || || |||||||| | ||| | || || |||||| Sbjct 39090 CAGCGTTTGATCTTTGCCGGAAAGCAGTTGGAAGATGGCCGAACCCTCTCTGACTACAAC 39031 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 |||||||| || || || | || | ||||||||| | || ||||| || Sbjct 39030 ATTCAAAAAGAATCTACTCTCCACCTTGTTTTGCGTCTCCGTGGTGGTAT 38981 Score = 131 bits (144), Expect = 1e-25 Identities = 165/227 (73%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 ||||| || ||||| || ||| ||||||||||| | || ||| | ||||| || |||| Sbjct 38754 ATGCAAATCTTTGTCAAGACTTTGACCGGCAAGACCATCACTTTGGAAGTTGAGTCGTCT 38695 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 || | ||||||| || || || || |||||||| ||||| || ||||| || || Sbjct 38694 GATACCATTGAGAACGTGAAGGCCAAGATCCAAGACAAGGAAGGAATCCCACCTGACCAG 38635 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 |||||||| || | ||| || || ||| | || || | ||| |||| ||||||||| Sbjct 38634 CAGCGTTTGATCTTCGCTGGAAAGCAACTTGAGGATGGCCGTACCCTTTCTGATTACAAC 38575 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGG 27214 || || |||||||| || | || | || |||||| | || ||||| Sbjct 38574 ATCCAGAAGGAGTCCACTCTTCACCTCGTCTTGCGTCTTCGTGGTGG 38528 Score = 127 bits (140), Expect = 2e-24 Identities = 166/230 (72%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 ||||| || ||||| || || || || || ||| | |||||| | ||||| || | ||| Sbjct 158126 ATGCAAATCTTTGTCAAGACCCTCACTGGAAAGACCATTACTTTGGAAGTCGAGTCATCC 158185 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| | ||||| | ||||| || || || || || ||||| || ||||| || || Sbjct 158186 GACACTATTGAAAACGTCAAGGCCAAGATCCAGGATAAGGAAGGAATCCCACCAGACCAG 158245 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 |||||||| || | ||| || || || |||||||| | ||| | || || |||||| Sbjct 158246 CAGCGTTTGATTTTCGCTGGAAAGCAGTTGGAAGATGGCCGCACCCTCTCTGACTACAAC 158305 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 |||||||||||||| || | || ||||| | ||| | || ||||| || Sbjct 158306 ATTCAAAAGGAGTCTACTCTTCACTTGGTCCTTCGTCTTCGTGGTGGTAT 158355 Score = 116 bits (128), Expect = 3e-21 Identities = 162/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 ||||| || || || || ||| |||| || ||| | || ||| | ||||| ||| | || Sbjct 158889 ATGCAAATCTTCGTCAAGACTTTGACTGGAAAGACCATCACTTTGGAAGTTGAATCCTCT 158948 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 || | ||||||| || || || || || || || ||||| || |||||||| || Sbjct 158949 GATACCATTGAGAACGTTAAGGCCAAGATCCAGGATAAGGAAGGAATTCCACCCGACCAG 159008 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 || ||||| || | || || || || ||||||||| | ||| |||| || |||||| Sbjct 159009 CAACGTTTGATCTTTGCTGGAAAGCAGTTGGAAGACGGCCGTACCCTTTCTGACTACAAC 159068 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGG 27214 ||||| |||||||| ||| | || | || |||||| | || || || Sbjct 159069 ATTCAGAAGGAGTCTACCCTCCACCTTGTCTTGCGTCTTCGTGGAGG 159115 Score = 91.5 bits (100), Expect = 1e-13 Identities = 139/198 (70%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| || || || || || || || ||| | || |||||||| || || | || Sbjct 158661 ATGCAGATCTTCGTCAAGACCCTCACGGGAAAGACCATCACTCTTGAGGTTGAGTCTTCT 158720 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| | || || | ||||| || ||||||||||| || || || ||||| || || Sbjct 158721 GACACCATCGAAAATGTCAAGGCCAAGATTCAAGACAAGGAGGGTATTCCACCTGACCAG 158780 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 || ||| | || | |||||| || || | ||||| | || | ||||| |||||| Sbjct 158781 CAACGTCTCATCTTCGCCGGAAAGCAGCTTGAAGATGGCCGCACTCTCTCCGACTACAAC 158840 Query 27168 ATTCAAAAGGAGTCGACC 27185 || || ||||| || ||| Sbjct 158841 ATCCAGAAGGAATCTACC 158858 >seq30 Length=118212 Score = 127 bits (140), Expect = 2e-24 Identities = 166/230 (72%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 ||||| || || || || || || || || ||| | |||||| | ||||| || | ||| Sbjct 47618 ATGCAAATCTTCGTCAAGACCCTCACTGGAAAGACCATTACTTTGGAAGTCGAGTCATCC 47677 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| | ||||| | ||||| || || || || || ||||| || ||||| || || Sbjct 47678 GACACTATTGAAAACGTCAAGGCCAAGATCCAGGATAAGGAAGGAATCCCACCAGACCAG 47737 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 |||||||| || | |||||| || || |||||||| | ||| | || || |||||| Sbjct 47738 CAGCGTTTGATTTTCGCCGGAAAGCAGTTGGAAGATGGCCGCACCCTCTCTGACTACAAC 47797 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 |||||||||||||| || | || ||||| | ||| | || ||||| || Sbjct 47798 ATTCAAAAGGAGTCTACTCTTCACTTGGTCCTTCGTCTTCGTGGTGGTAT 47847 Score = 125 bits (138), Expect = 6e-24 Identities = 164/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 ||||| || ||||| || ||| |||| || ||| |||| ||| | ||||| ||| | || Sbjct 48381 ATGCAAATCTTTGTCAAGACTTTGACTGGAAAGACTATCACTTTGGAAGTTGAATCCTCT 48440 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 || | ||||||| || || || || || || || ||||| || |||||||| || Sbjct 48441 GATACCATTGAGAACGTTAAGGCCAAGATCCAGGATAAGGAAGGAATTCCACCCGACCAG 48500 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 || ||||| || | || || || || ||||||||| | ||| |||| || |||||| Sbjct 48501 CAACGTTTGATCTTTGCTGGAAAGCAGTTGGAAGACGGCCGTACCCTTTCTGACTACAAC 48560 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGG 27214 ||||| |||||||| ||| | || | || |||||| | || || || Sbjct 48561 ATTCAGAAGGAGTCTACCCTCCACCTTGTCTTGCGTCTTCGTGGAGG 48607 Score = 91.5 bits (100), Expect = 1e-13 Identities = 158/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| || || || || || || || ||| | || |||||||| || || | || Sbjct 48153 ATGCAGATCTTCGTCAAGACCCTCACGGGAAAGACCATCACTCTTGAGGTTGAGTCTTCT 48212 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| | || || | ||||| || ||||||||||| || || || || || || || Sbjct 48213 GACACCATCGAAAACGTCAAGGCCAAGATTCAAGACAAGGAGGGTATTCCGCCTGACCAG 48272 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 || ||| | || | |||||| || || | ||||| | || | ||||| |||||| Sbjct 48273 CAACGTCTCATCTTCGCCGGAAAGCAGCTTGAAGATGGCCGCACTCTCTCCGACTACAAC 48332 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 || || ||||| || ||| | || | || | ||| | || ||||| || Sbjct 48333 ATCCAGAAGGAATCTACCCTTCACCTTGTCCTCCGTCTCCGTGGTGGTAT 48382 >seq2 Length=712398 Score = 105 bits (116), Expect = 6e-18 Identities = 162/231 (70%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 26987 CATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTC 27046 |||||| || || || || || || || || ||| | || || || || || || | || Sbjct 184897 CATGCAAATTTTCGTCAAGACCCTTACGGGAAAGACCATCACCCTCGAGGTTGAGTCTTC 184838 Query 27047 CGACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCA 27106 |||| | || |||| ||||| || || || ||||| || || || ||||| || || Sbjct 184837 CGACACCATCGAGAACGTCAAGGCCAAGATCCAGGACAAGGAGGGAATCCCACCTGACCA 184778 Query 27107 ACAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAA 27166 |||||| | || | |||||| || || | || ||| | ||| |||| || ||||| Sbjct 184777 GCAGCGTCTCATCTTCGCCGGAAAGCAGCTCGAGGACGGCCGTACCCTTTCTGACTACAA 184718 Query 27167 CATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 |||||| |||||||| ||| | || | || |||||| | || || || || Sbjct 184717 CATTCAGAAGGAGTCCACCCTCCACCTTGTCTTGCGTCTCCGTGGAGGTAT 184667 >seq90 Length=625778 Score = 104 bits (114), Expect = 2e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| || || || || || || || ||| | || || || || ||||| | ||| Sbjct 499206 ATGCAGATCTTCGTCAAGACCCTCACGGGTAAGACCATCACCCTCGAGGTGGAGTCTTCC 499265 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| | || || | ||||| || || || ||||| || || || ||||| || || Sbjct 499266 GACACTATCGAAAACGTCAAGGCCAAGATCCAGGACAAGGAGGGAATCCCACCTGACCAG 499325 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 |||||| | || | ||||| || || | || ||| | ||| |||| || |||||| Sbjct 499326 CAGCGTCTCATCTTTGCCGGAAAGCAGCTCGAGGACGGCCGCACCCTTTCTGACTACAAC 499385 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGG 27214 || || |||||||||||| | || | || |||||| | || || || Sbjct 499386 ATCCAGAAGGAGTCGACCCTCCACCTCGTCTTGCGTCTCCGTGGAGG 499432 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 434916024258240