Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhizoclosmatium_20globosum_20[genbank_20GCA_5F002104985.1_202017-04- 20] 437 sequences; 57,018,351 total letters Query= NC_029997.1 Length=105667 Score E Sequences producing significant alignments: (Bits) Value seq30 107 1e-18 seq335 104 2e-17 seq90 98.7 7e-16 >seq30 Length=118212 Score = 107 bits (118), Expect = 1e-18 Identities = 142/197 (72%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||| ||||| || |||||||||||||| || |||||||| || ||||| || | Sbjct 48153 ATGCAGATCTTCGTCAAGACCCTCACGGGAAAGACCATCACTCTTGAGGTTGAGTCTTCT 48212 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 ||||| | |||| | || || ||| ||||| || ||| | ||||| || || Sbjct 48213 GACACCATCGAAAACGTCAAGGCCAAGATTCAAGACAAGGAGGGTATTCCGCCTGACCAG 48272 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790 || ||| | || || ||||| || || || ||||| | |||||| | ||| |||||| Sbjct 48273 CAACGTCTCATCTTCGCCGGAAAGCAGCTTGAAGATGGCCGCACTCTCTCCGACTACAAC 48332 Query 23791 ATACAAAAAGAGTCCAC 23807 || || || || || || Sbjct 48333 ATCCAGAAGGAATCTAC 48349 >seq335 Length=386496 Score = 104 bits (114), Expect = 2e-17 Identities = 141/197 (72%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||| ||||| || |||||||||||||| || |||||||| || ||||| || | Sbjct 158661 ATGCAGATCTTCGTCAAGACCCTCACGGGAAAGACCATCACTCTTGAGGTTGAGTCTTCT 158720 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 ||||| | |||| | || || ||| ||||| || ||| | || || || || Sbjct 158721 GACACCATCGAAAATGTCAAGGCCAAGATTCAAGACAAGGAGGGTATTCCACCTGACCAG 158780 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790 || ||| | || || ||||| || || || ||||| | |||||| | ||| |||||| Sbjct 158781 CAACGTCTCATCTTCGCCGGAAAGCAGCTTGAAGATGGCCGCACTCTCTCCGACTACAAC 158840 Query 23791 ATACAAAAAGAGTCCAC 23807 || || || || || || Sbjct 158841 ATCCAGAAGGAATCTAC 158857 Score = 96.9 bits (106), Expect = 2e-15 Identities = 122/165 (74%), Gaps = 2/165 (1%) Strand=Plus/Plus Query 23612 TGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACGG 23671 |||| || ||||| ||||||||||| || || || ||||| ||||| || || ||| | | Sbjct 157659 TGCAAATCTTCGTAAAAACCCTCACCGGCAAGACCATCACCCTCGAGGTCGAGTCCTCTG 157718 Query 23672 ACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 ||||| | || ||| | || | ||||| ||||| ||||| | || ||||| ||| Sbjct 157719 ACACTATCGAGAATGTCAAGGC-GAAAATCCAGGACAAGGAAGGAATCCCACCAGACCAA 157777 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACT 23775 |||||| | || ||||| || || || || ||||||| || ||| Sbjct 157778 CAGCGTCTCATCTTTGCTGGAAAGCAGCTCGAAGACGGCCGTACT 157822 Score = 84.2 bits (92), Expect = 1e-11 Identities = 119/165 (72%), Gaps = 2/165 (1%) Strand=Plus/Minus Query 23612 TGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACGG 23671 |||| || ||||| ||||||||||| ||||| || ||||| ||||| || || ||| | | Sbjct 39561 TGCAAATCTTCGTAAAAACCCTCACCGGAAAGACAATCACCCTCGAGGTCGAGTCCTCTG 39502 Query 23672 ACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 |||| | || ||| | || | || || ||||| || ||| | || || || || Sbjct 39501 ACACCATCGAGAATGTCAAGGC-CAAGATCCAAGACAAGGAGGGTATTCCACCTGACCAG 39443 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACT 23775 |||||| | || ||||| || || || || ||||||| || ||| Sbjct 39442 CAGCGTCTCATCTTTGCTGGAAAGCAGCTCGAAGACGGTCGTACT 39398 Score = 82.4 bits (90), Expect = 5e-11 Identities = 111/155 (72%), Gaps = 0/155 (0%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||||||||| || || | || ||||| || ||||| ||||| ||||| ||| | Sbjct 158354 ATGCAGATTTTCGTCAAGACTTTGACTGGAAAGACTATCACCCTCGAGGTTGAATCCTCT 158413 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 || || |||| | | || || || ||||| ||||| | || ||||| || Sbjct 158414 GATACCATTGAGAACGTGAAGGCCAAGATCCAGGACAAGGAAGGAATTCCACCAGACCAG 158473 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGA 23765 |||||| | || ||||| || || ||||| ||||| Sbjct 158474 CAGCGTCTCATCTTTGCTGGAAAGCAACTTGAAGA 158508 >seq90 Length=625778 Score = 98.7 bits (108), Expect = 7e-16 Identities = 141/199 (71%), Gaps = 0/199 (0%) Strand=Plus/Plus Query 23609 AAATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCA 23668 |||||||||| ||||| || ||||||||||| || || ||||| ||||| || || || Sbjct 499204 AAATGCAGATCTTCGTCAAGACCCTCACGGGTAAGACCATCACCCTCGAGGTGGAGTCTT 499263 Query 23669 CGGACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATC 23728 | |||||| | |||| | || || || ||||| || || | || || || | Sbjct 499264 CCGACACTATCGAAAACGTCAAGGCCAAGATCCAGGACAAGGAGGGAATCCCACCTGACC 499323 Query 23729 AACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACA 23788 | |||||| | || |||||||| || || || || |||| ||||| | || |||| Sbjct 499324 AGCAGCGTCTCATCTTTGCCGGAAAGCAGCTCGAGGACGGCCGCACCCTTTCTGACTACA 499383 Query 23789 ACATACAAAAAGAGTCCAC 23807 |||| || || ||||| || Sbjct 499384 ACATCCAGAAGGAGTCGAC 499402 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 338007799781996