Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhizoclosmatium_20globosum_20[genbank_20GCA_5F002104985.1_202017-04- 20] 437 sequences; 57,018,351 total letters Query= NC_030230.1 Length=372707 Score E Sequences producing significant alignments: (Bits) Value seq335 158 3e-33 seq30 158 3e-33 seq2 122 2e-22 >seq335 Length=386496 Score = 158 bits (174), Expect = 3e-33 Identities = 162/212 (76%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 225502 AGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCT 225561 ||||||||||| || || ||||| || |||| ||||| |||| | ||| | |||||| Sbjct 158872 AGGACAAGGTGAAGGGTAGATTCCTTCTGGATGTTGTAGTCGGAGAGAGTGCGGCCATCT 158813 Query 225562 TCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCT 225621 || |||||||| || |||||||| || ||||| ||||| || |||||||| ||||||||| Sbjct 158812 TCAAGCTGCTTTCCGGCGAAGATGAGACGTTGCTGGTCAGGTGGAATACCCTCCTTGTCT 158753 Query 225622 TGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTC 225681 || ||||| ||| ||| |||||||||||| || | || || || | ||||| ||| Sbjct 158752 TGAATCTTGGCCTTGACATTTTCGATGGTGTCAGAAGACTCAACCTCAAGAGTGATGGTC 158693 Query 225682 TTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713 || ||||| | || || | ||| | ||||| Sbjct 158692 TTTCCCGTGAGGGTCTTGACGAAGATCTGCAT 158661 Score = 149 bits (164), Expect = 1e-30 Identities = 166/222 (75%), Gaps = 0/222 (0%) Strand=Plus/Plus Query 225492 ACGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGT 225551 |||||| | || ||| ||||| |||||||| || || |||| |||||||| | | || Sbjct 38533 ACGAAGACGCAAGACGAGGTGAAGAGTGGACTCCTTCTGGATGTTGTAATCAGAAAGGGT 38592 Query 225552 TCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACC 225611 | ||||| || || ||||| ||||||||||| | || || ||||| || || || || Sbjct 38593 ACGGCCATCCTCAAGTTGCTTTCCAGCGAAGATCAAACGCTGCTGGTCAGGTGGGATTCC 38652 Query 225612 TTCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAA 225671 |||||||||||||||||| |||||| || ||||| || || | || || || || Sbjct 38653 TTCCTTGTCTTGGATCTTGGCCTTCACGTTCTCAATGGTATCAGACGACTCAACTTCCAA 38712 Query 225672 CGTGATCGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713 ||||| |||||||| |||||||| || | || | |||||| Sbjct 38713 AGTGATGGTCTTGCCGGTCAAAGTCTTGACAAAGATTTGCAT 38754 Score = 149 bits (164), Expect = 1e-30 Identities = 160/212 (75%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 225502 AGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCT 225561 || |||||||| ||||||||||| || || | || || |||| |||||| | |||||| Sbjct 38771 AGAACAAGGTGAAGAGTGGATTCCTTCTGAATGTTATAGTCGGACAAAGTGCGACCATCT 38830 Query 225562 TCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCT 225621 || |||||||| |||||||| ||||| ||||| ||||| || |||||||| ||||| || Sbjct 38831 TCAAGCTGCTTTCCAGCGAAAATAAGACGTTGCTGGTCAGGTGGAATACCCTCCTTATCC 38890 Query 225622 TGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTC 225681 || ||||| ||||||| ||| || ||||| || | || || || || || || ||| Sbjct 38891 TGAATCTTGGCCTTCACATTTTCAATAGTGTCGGATGACTCGACTTCCAAGGTAATGGTC 38950 Query 225682 TTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713 || || || | || || | ||| | ||||| Sbjct 38951 TTTCCAGTAAGTGTCTTGACGAAGATCTGCAT 38982 Score = 143 bits (158), Expect = 6e-29 Identities = 165/222 (74%), Gaps = 0/222 (0%) Strand=Plus/Minus Query 225492 ACGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGT 225551 |||||| | || |||||||||||| || || || || || | ||||| || | | || Sbjct 159110 ACGAAGACGCAAGACAAGGTGGAGGGTAGACTCCTTCTGAATGTTGTAGTCAGAAAGGGT 159051 Query 225552 TCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACC 225611 | || ||||| | |||||| ||||| ||||| | ||||| |||||||| ||||| || Sbjct 159050 ACGGCCGTCTTCCAACTGCTTTCCAGCAAAGATCAAACGTTGCTGGTCGGGTGGAATTCC 158991 Query 225612 TTCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAA 225671 |||||| || |||||||| ||| || || ||||| || |||| ||| || || || Sbjct 158990 TTCCTTATCCTGGATCTTGGCCTTAACGTTCTCAATGGTATCAGAGGATTCAACTTCCAA 158931 Query 225672 CGTGATCGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713 ||||| ||||| || |||||||| || | ||| | |||||| Sbjct 158930 AGTGATGGTCTTTCCAGTCAAAGTCTTGACGAAGATTTGCAT 158889 Score = 134 bits (148), Expect = 3e-26 Identities = 154/207 (74%), Gaps = 0/207 (0%) Strand=Plus/Plus Query 225492 ACGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGT 225551 ||| || | || |||||||||||||| ||||||||||| | ||||| || | | || Sbjct 38989 ACGGAGACGCAAAACAAGGTGGAGAGTAGATTCTTTTTGAATGTTGTAGTCAGAGAGGGT 39048 Query 225552 TCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACC 225611 || |||||||| | |||||| || || ||||| | || || ||||| || || || || Sbjct 39049 TCGGCCATCTTCCAACTGCTTTCCGGCAAAGATCAAACGCTGCTGGTCAGGTGGGATTCC 39108 Query 225612 TTCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAA 225671 ||||||||| |||||||| ||| ||| || ||||| || |||| ||| || || | Sbjct 39109 TTCCTTGTCCTGGATCTTGGCCTTGACATTCTCAATGGTATCGGAGGATTCAACCTCAAG 39168 Query 225672 CGTGATCGTCTTGCCCGTCAAAGTTTT 225698 || || ||||| || |||||||| || Sbjct 39169 AGTAATGGTCTTTCCAGTCAAAGTCTT 39195 Score = 125 bits (138), Expect = 2e-23 Identities = 122/157 (78%), Gaps = 0/157 (0%) Strand=Plus/Plus Query 225556 CCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCC 225615 || ||||| |||||||| ||||| ||||| || || || ||||| || |||||||| ||| Sbjct 39405 CCGTCTTCGAGCTGCTTTCCAGCAAAGATGAGACGCTGCTGGTCAGGTGGAATACCCTCC 39464 Query 225616 TTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTG 225675 |||||||||||||| ||| ||| ||||||||||| |||| || || || | ||| Sbjct 39465 TTGTCTTGGATCTTGGCCTTGACATTCTCGATGGTGTCAGAGGACTCGACCTCGAGGGTG 39524 Query 225676 ATCGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCA 225712 || ||||| || || | ||||||| ||| | ||||| Sbjct 39525 ATTGTCTTTCCGGTGAGGGTTTTTACGAAGATTTGCA 39561 Score = 118 bits (130), Expect = 3e-21 Identities = 121/158 (77%), Gaps = 0/158 (0%) Strand=Plus/Minus Query 225556 CCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCC 225615 |||||||| || ||||| ||||| ||||| || || || ||||| || ||||| |||||| Sbjct 158511 CCATCTTCAAGTTGCTTTCCAGCAAAGATGAGACGCTGCTGGTCTGGTGGAATTCCTTCC 158452 Query 225616 TTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTG 225675 ||||| |||||||| |||||| || ||||| || |||| ||| || || | ||| Sbjct 158451 TTGTCCTGGATCTTGGCCTTCACGTTCTCAATGGTATCAGAGGATTCAACCTCGAGGGTG 158392 Query 225676 ATCGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713 || ||||| || |||||||| || | ||| | ||||| Sbjct 158391 ATAGTCTTTCCAGTCAAAGTCTTGACGAAAATCTGCAT 158354 Score = 116 bits (128), Expect = 9e-21 Identities = 120/157 (76%), Gaps = 0/157 (0%) Strand=Plus/Minus Query 225556 CCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCC 225615 || ||||| |||||||| ||||| ||||| || || |||||||| || || || |||||| Sbjct 157815 CCGTCTTCGAGCTGCTTTCCAGCAAAGATGAGACGCTGTTGGTCTGGTGGGATTCCTTCC 157756 Query 225616 TTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTG 225675 ||||| ||||| || ||| ||| ||||| ||||| |||| || || || | ||| Sbjct 157755 TTGTCCTGGATTTTCGCCTTGACATTCTCGATAGTGTCAGAGGACTCGACCTCGAGGGTG 157696 Query 225676 ATCGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCA 225712 || |||||||| || | ||||||| ||| | ||||| Sbjct 157695 ATGGTCTTGCCGGTGAGGGTTTTTACGAAGATTTGCA 157659 >seq30 Length=118212 Score = 158 bits (174), Expect = 3e-33 Identities = 162/212 (76%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 225502 AGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCT 225561 ||||||||||| || || ||||| || |||| ||||| |||| | ||| | |||||| Sbjct 48364 AGGACAAGGTGAAGGGTAGATTCCTTCTGGATGTTGTAGTCGGAGAGAGTGCGGCCATCT 48305 Query 225562 TCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCT 225621 || |||||||| || |||||||| || ||||| ||||| ||||||||||| ||||||||| Sbjct 48304 TCAAGCTGCTTTCCGGCGAAGATGAGACGTTGCTGGTCAGGCGGAATACCCTCCTTGTCT 48245 Query 225622 TGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTC 225681 || ||||| ||| || |||||||||||| || | || || || | ||||| ||| Sbjct 48244 TGAATCTTGGCCTTGACGTTTTCGATGGTGTCAGAAGACTCAACCTCAAGAGTGATGGTC 48185 Query 225682 TTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713 || ||||| | || || | ||| | ||||| Sbjct 48184 TTTCCCGTGAGGGTCTTGACGAAGATCTGCAT 48153 Score = 140 bits (154), Expect = 8e-28 Identities = 164/222 (74%), Gaps = 0/222 (0%) Strand=Plus/Minus Query 225492 ACGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGT 225551 |||||| | || |||||||||||| || || || || || | ||||| || | | || Sbjct 48602 ACGAAGACGCAAGACAAGGTGGAGGGTAGACTCCTTCTGAATGTTGTAGTCAGAAAGGGT 48543 Query 225552 TCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACC 225611 | || ||||| | |||||| ||||| ||||| | ||||| |||||||| ||||| || Sbjct 48542 ACGGCCGTCTTCCAACTGCTTTCCAGCAAAGATCAAACGTTGCTGGTCGGGTGGAATTCC 48483 Query 225612 TTCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAA 225671 |||||| || |||||||| ||| || || ||||| || |||| ||| || || || Sbjct 48482 TTCCTTATCCTGGATCTTGGCCTTAACGTTCTCAATGGTATCAGAGGATTCAACTTCCAA 48423 Query 225672 CGTGATCGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713 ||||| ||||| || |||||||| || | || | |||||| Sbjct 48422 AGTGATAGTCTTTCCAGTCAAAGTCTTGACAAAGATTTGCAT 48381 Score = 98.7 bits (108), Expect = 2e-15 Identities = 116/157 (74%), Gaps = 0/157 (0%) Strand=Plus/Minus Query 225556 CCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCC 225615 || ||||| |||||||| ||||| ||||| || || || ||||| || || || |||||| Sbjct 47306 CCGTCTTCGAGCTGCTTTCCAGCAAAGATGAGACGCTGCTGGTCTGGTGGGATTCCTTCC 47247 Query 225616 TTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTG 225675 ||||| ||||| || ||| ||| ||||| ||||| |||| || || || | ||| Sbjct 47246 TTGTCCTGGATTTTCGCCTTGACATTCTCGATAGTGTCAGAGGACTCGACCTCGAGGGTG 47187 Query 225676 ATCGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCA 225712 || |||||||| || | || || | || | ||||| Sbjct 47186 ATGGTCTTGCCGGTGAGGGTCTTAACAAAGATTTGCA 47150 >seq2 Length=712398 Score = 122 bits (134), Expect = 2e-22 Identities = 162/225 (72%), Gaps = 0/225 (0%) Strand=Plus/Plus Query 225492 ACGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGT 225551 ||| || | || |||||||||||| ||||| || || || | ||||| || | | || Sbjct 184675 ACGGAGACGCAAGACAAGGTGGAGGGTGGACTCCTTCTGAATGTTGTAGTCAGAAAGGGT 184734 Query 225552 TCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACC 225611 | || || || |||||||| || |||||||| || || || ||||| || || || || Sbjct 184735 ACGGCCGTCCTCGAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCAGGTGGGATTCC 184794 Query 225612 TTCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAA 225671 |||||||| |||||||| ||| || ||||||||||| || | || || || | Sbjct 184795 CTCCTTGTCCTGGATCTTGGCCTTGACGTTCTCGATGGTGTCGGAAGACTCAACCTCGAG 184854 Query 225672 CGTGATCGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCATTTT 225716 ||||| ||||| ||||| | || || | ||| | |||||| || Sbjct 184855 GGTGATGGTCTTTCCCGTAAGGGTCTTGACGAAAATTTGCATGTT 184899 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1192524522943278