Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhizoclosmatium_20globosum_20[genbank_20GCA_5F002104985.1_202017-04- 20] 437 sequences; 57,018,351 total letters Query= NC_030656.1 Length=133492 Score E Sequences producing significant alignments: (Bits) Value seq157 132 4e-26 >seq157 Length=558770 Score = 132 bits (146), Expect = 4e-26 Identities = 294/439 (67%), Gaps = 3/439 (1%) Strand=Plus/Plus Query 4256 TTTTTGGTATTCGGATACTCGCTTTTCGAAGAAATTAGTTTTGCCTTCTAACGAAATATT 4315 ||| |||||||| ||| ||| || ||||| || || || |||| || || || Sbjct 322277 TTTCTGGTATTCTCCCACTTTCTTCTCAAAGAAGTTGGTCTTTCCTTGCAAGGAGATGAG 322336 Query 4316 TTCCATAAAATCAAACGGATTAGTTGCGTTGTAATGTTTTTCACACTTTAGAGCTACAAG 4375 ||||| || ||||| || || ||||||| | || ||| | || || | Sbjct 322337 ATCCATGAAGTCAAAGGGGTTCTCGACGTTGTAGAGCTTAGGACAGCCCAAAGAAACCAA 322396 Query 4376 CAATCGGTCAGCTACAAATTCTATATACTGGCTCATGAGTTCGCAGTTAATTCCAATTAA 4435 | || ||| || || ||||| || ||||||||||| | || |||| |||||||| | Sbjct 322397 AAGTCTGTCTGCGACGAATTCAATGTACTGGCTCATCAAGTCAGAGTTCATTCCAATCAG 322456 Query 4436 TCTCACAGGTAGCGCGTATGTCAAAAACTCTTGTTCTATAGTTACGGCTTCTGTGATTAT 4495 | ||||||| || |||| ||||||| ||||| || | || ||||| | || Sbjct 322457 TTTCACAGGGAGGGCGTCAATCAAAAATTCTTGCTCAAGCTCGACAGCTTCAGAGA--CA 322514 Query 4496 ATCTTTTA-TTTTATCTTTAGATGGTTTATTTACTAAGTATCCAAACAATAAACACGCAA 4554 ||||| || |||| | ||| ||||| || | | |||||| | ||| |||| Sbjct 322515 ATCTTGTAGACGTATCGACTGTTGGCTTATTCTTCAACAAGCTAAACAAAAGACAAGCAA 322574 Query 4555 AATCACAATGCAAACCTTCGTCTCTGCTAATCAGTTCGTTAGAAAACGTTAATCCGGGCA 4614 | ||| || | || ||||||||| ||| || || ||||| || || | || |||| Sbjct 322575 AGTCAGTGTGGAGGCCCTCGTCTCTGGAAATGAGCTCATTAGAGAATGTAAGGCCTGGCA 322634 Query 4615 TTAAACCTCTCTTTTTAAGCCAAAATATAGCGGCAAATGACCCAGAAAAGAATATGCCTT 4674 | || || | ||| || ||||| || || | ||||| || ||||| ||||| || || | Sbjct 322635 TCAAGCCACGCTTCTTGAGCCAGAAGATGGAAGCAAAGGAACCAGAGAAGAAAATTCCCT 322694 Query 4675 CTACGGCGGCAAACGCTAC 4693 | ||| |||| || || || Sbjct 322695 CCACGACGGCGAAAGCAAC 322713 Score = 95.1 bits (104), Expect = 1e-14 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 4874 CTGAAATCCGTAAAAGCATCTAGCTTCTGTTACTTGAACTTCGTTACAAAATCTTTCTAC 4933 ||| || || || || ||||| ||||||| | ||||| || || | ||||| || || Sbjct 323024 CTGGAAGCCATAGAAACATCTCGCTTCTGGAATCTGAACATCATTGGAGAATCTCTCAAC 323083 Query 4934 TAAGTTTTCGTTTACTATACCGTCACTGGCTGCAAAAAACGCCAAAACATGAGATATAAA 4993 | ||| || || || || ||||| || || || || || | || || || | ||| Sbjct 323084 AAGGTTCTCATTCACGATGCCGTCCGAAGCAGCGAAGAAGGCAAGGACGTGGGAAACAAA 323143 Query 4994 GTACTGTTCGTCAGGCTTAAGTTTTTTCCAGTGGGGCAAATCTTTAGTTAAATCAACTTC 5053 | | | |||||| | || || | ||||| | |||||| | || || ||||| Sbjct 323144 GAATTTCTCGTCATCACTGAGCTTCTCCCAGTCGCTAGCATCTTTGGACAAGTCTACTTC 323203 Query 5054 TTCAACAGTCCAAAACGACGCTTCCGCTTTTTTGTACATAGACCAAA 5100 |||||||||||| || || ||||| ||||| |||||||| ||||| Sbjct 323204 TTCAACAGTCCAGAAGGATGCTTCTGCTTTCTTGTACATTTGCCAAA 323250 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 427047325560521