Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhizoclosmatium_20globosum_20[genbank_20GCA_5F002104985.1_202017-04- 20] 437 sequences; 57,018,351 total letters Query= NC_031033.1 Length=217124 Score E Sequences producing significant alignments: (Bits) Value seq38 118 1e-21 seq13 118 1e-21 seq157 105 9e-18 >seq38 Length=108757 Score = 118 bits (130), Expect = 1e-21 Identities = 727/1151 (63%), Gaps = 24/1151 (2%) Strand=Plus/Plus Query 77112 TGAGGATTAACTATTTGAAATTCTCCAGACAATACTCTACGAGTGTAAATATTACTGGTA 77171 || ||||| || ||||| ||||| || | | || | |||||||| ||||| || || Sbjct 87069 TGCGGATTCACAATTTGGAATTCACCCGCAAGAACACGGCGAGTGTAGATATTGCTTGTG 87128 Query 77172 TATGGTTCCACAGATTCATTGTTTCCCAAAATTTGAGCAGTAGAAGCAGTTGGCATAGGT 77231 || ||||| | | | || ||||| || | ||| |||| || || ||||||||||| || Sbjct 87129 TACGGTTCAAAACACTCGTTGTTACCAAGAATCTGAGATGTCGATGCAGTTGGCATTGGA 87188 Query 77232 GCCACCAATAAACTATTTCTGAGACCATGTGTTCTGATTTTATCTTTTAGATATTTCCAA 77291 |||| ||| ||| |||| || ||| | | | ||| | ||| | ||| Sbjct 87189 GCCATCAACAAAGAGTTTCGGACACCGTACTTGGCCACCTTAGCGCGAAGAGCATCCCAG 87248 Query 77292 TCCCAA--AGATCTGAAGGTA-CAACATCCCAAAGATCGTATTGTAGAATTCCGTTACTA 77348 ||| || ||| || | ||| | |||||| || ||| | ||| || | Sbjct 87249 TCCAAATCAGAGTTGCTCAAATCAATGTTCCAAAGGTCTGGTTGCAACTGTCCTTT--TG 87306 Query 77349 GCATATGA--TCCATTATATGTTTCATAAGGTCCTTCTGTTTCAGCTAGTTCACAACTCG 77406 ||| | ||| | || ||| || || || ||| |||| || | ||||| | Sbjct 87307 ACATTGGGCTTCCTTCGTAAGTTGAGTATGGACCGTCTTTTTCGGCAATCTCACACGAAG 87366 Query 77407 CTTCCAATGCTCCGTAATAAATTGTTTCGAAAATCTTCTTATTGAGATCTTGTGCTTCAA 77466 | |||| || |||| || || |||| || |||||||| || || |||| ||| | Sbjct 87367 CCTCCACGGCAGCGTAGTACATGTTTTCAAAGATCTTCTTGTTCAGCTCTTTCGCTCCTT 87426 Query 77467 TACTATCAAACGGATAATGTAAAAGAATAAAGGCATCTGCTAATCCCTGAACTCCAATAC 77526 || || ||| | | | || || ||||| || | ||| |||||||||| || Sbjct 87427 CGGAGTCGAATGGAAGACGCATCTTGATGAAAGCATCGGCAAGTCCTTGAACTCCAAGAC 87486 Query 77527 CAATAGGTCTATGTCTCTTATTGGAAATTTTAGCTTCTGGAATAGGATAATAATTAATGT 77586 | ||||||| || | | | || || | || || || | ||| || ||||||||| Sbjct 87487 CGATAGGTCGGTGACGCATGTTTGAGTTCTTGGCCTCAATGACAGGGTAGAAATTAATGT 87546 Query 77587 CTATAATTTTATTGAGATTTCTAACAACTACTTTAACCACGTCCTTTAGTTTAAGAAAAT 77646 | || || || || | || | | |||||| || | ||||| ||| | Sbjct 87547 CAATGATCTTGTTCAAGTTCTTGGTCATGACTTTAGTGACCTGGCGGAGTTTCTCAAAGT 87606 Query 77647 C--AAATCTTCCATCT-ATAACAAACATGTTCAAAGCTA--TAGATGCTAGATTACAAAC 77701 | || | || | | |||||| | | ||| | |||| || || ||||| || Sbjct 87607 CGTAAGTAGTCTTGTTCACAACAAAG--GCTGGAAGGGAGATAGAAGCAAGGTTACAGAC 87664 Query 77702 TGCTACCTCATTAGCGTTGGCATATTGTATTATCTCGGTACATAGATTACTACATTTGAT 77761 || | || | || | || | | || || || || || ||||| || ||||| Sbjct 87665 GGCGATTTCGTCAGGAGAAGTGTACTCGACGATTTCTGTGCAAAGGTTACTGCACTTGAT 87724 Query 77762 AGTGCCCAGATTTTGTTGGTTGCTCTTTTTATTGCATGAGTCCTTATAAAGAATAAACGG 77821 ||||||| || |||||||| ||| | || || | || || || | || | || Sbjct 87725 GGTGCCCAAGTTCTGTTGGTTAGACTTGCTGTTACAGGCATCTTTGTACAACATGTATGG 87784 Query 77822 AGTCCCGGTTTCAATCTGTGATTCGATAATAGATTTCCAGACGACTCT-AGCTTTTATCA 77880 || || || || | || || || ||||| | | ||| | | ||| ||| || || | Sbjct 87785 GGTACCAGTCTCGGTTTGAGACTCAATAATGGCGTACCAAA-GCTTCTGAGCCTTGATAA 87843 Query 77881 TAGATTT--GTATCGCCTCTCT-CTTTCATATTGAGT-ATATAGCCGTTCAAATTCATCT 77936 ||| | | | || | | ||||||| || | ||| || |||||| | || Sbjct 87844 C---TTTACGGGCCAACCCTTTGCGTTCATAT-GATTCATAAAGTGCTTCAAACTTTTCG 87899 Query 77937 CCCCAAACATCATCCAATCCAGGGCATTCATTTGGGCACATCAATGACCAGTCACCATCT 77996 ||||| || ||||| || || |||| |||| || | | ||||||||||||| Sbjct 87900 CCCCAGCAGTCTTCCAACCCTGGCGCTTCACTTGGACAGAAGAGAGACCAGTCACCATTG 87959 Query 77997 TCCTTAACTCGTTTCATAAAGAGATCAGGTATCCATAGAGCAATAAATAGATCTCGGGTT 78056 || || || |||||||| | ||| ||||| |||||| || | ||||| | Sbjct 87960 CTCTCCACACGCTTCATAAACAAGTCACAGATCCAGAGAGCATAGAACAAGTCTCGAGCG 88019 Query 78057 CTATGTTCTTCATTTCCTGTATTCTTTTTAAGATCGAGAAACTCCATAATATCAGAATGC 78116 | | ||| || || || |||||||| || ||||| || || || | ||||| | ||| Sbjct 88020 CGGTTTTCCTCTTTACCAGTATTCTTCTTGAGATCAAGGAATTCAAAGATATCTGCGTGC 88079 Query 78117 CATGGTTCTAGATATATTGCCATAACTCCAGGTCGTTTATTACCTCCCTGATCTATATAT 78176 ||||| || | || || || | | || || || || || ||||| ||||| | ||| Sbjct 88080 CATGGCTCCAAGTAGATAGCAAAGGCCCCGGGACGCTTGTTGCCTCCTTGATCCACATAG 88139 Query 78177 CTGGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCGTTAGATGTTCCATTTGTT 78236 | || |||||||| | || | | ||| ||||| || || || || ||| || ||| Sbjct 88140 CGAGCAGTGTTATTGAAGACACGAAGCATCGGAATGATTCCATTCGAATGTCCGTTGGTT 88199 Query 78237 CCAGAAATATA 78247 |||| ||| || Sbjct 88200 CCAGCAATGTA 88210 >seq13 Length=692062 Score = 118 bits (130), Expect = 1e-21 Identities = 727/1151 (63%), Gaps = 24/1151 (2%) Strand=Plus/Plus Query 77112 TGAGGATTAACTATTTGAAATTCTCCAGACAATACTCTACGAGTGTAAATATTACTGGTA 77171 || ||||| || ||||| ||||| || | | || | |||||||| ||||| || || Sbjct 276865 TGCGGATTCACAATTTGGAATTCACCCGCAAGAACACGGCGAGTGTAGATATTGCTTGTG 276924 Query 77172 TATGGTTCCACAGATTCATTGTTTCCCAAAATTTGAGCAGTAGAAGCAGTTGGCATAGGT 77231 || ||||| | | | || ||||| || | ||| |||| || || ||||||||||| || Sbjct 276925 TACGGTTCAAAACACTCGTTGTTACCAAGAATCTGAGATGTCGATGCAGTTGGCATTGGA 276984 Query 77232 GCCACCAATAAACTATTTCTGAGACCATGTGTTCTGATTTTATCTTTTAGATATTTCCAA 77291 |||| ||| ||| |||| || ||| | | | ||| | ||| | ||| Sbjct 276985 GCCATCAACAAAGAGTTTCGGACACCGTACTTGGCCACCTTAGCGCGAAGAGCATCCCAG 277044 Query 77292 TCCCAA--AGATCTGAAGGTA-CAACATCCCAAAGATCGTATTGTAGAATTCCGTTACTA 77348 ||| || ||| || | ||| | |||||| || ||| | ||| || | Sbjct 277045 TCCAAATCAGAGTTGCTCAAATCAATGTTCCAAAGGTCTGGTTGCAACTGTCCTTT--TG 277102 Query 77349 GCATATGA--TCCATTATATGTTTCATAAGGTCCTTCTGTTTCAGCTAGTTCACAACTCG 77406 ||| | ||| | || ||| || || || ||| |||| || | ||||| | Sbjct 277103 ACATTGGGCTTCCTTCGTAAGTTGAGTATGGACCGTCTTTTTCGGCAATCTCACACGAAG 277162 Query 77407 CTTCCAATGCTCCGTAATAAATTGTTTCGAAAATCTTCTTATTGAGATCTTGTGCTTCAA 77466 | |||| || |||| || || |||| || |||||||| || || |||| ||| | Sbjct 277163 CCTCCACGGCAGCGTAGTACATGTTTTCAAAGATCTTCTTGTTCAGCTCTTTCGCTCCTT 277222 Query 77467 TACTATCAAACGGATAATGTAAAAGAATAAAGGCATCTGCTAATCCCTGAACTCCAATAC 77526 || || ||| | | | || || ||||| || | ||| |||||||||| || Sbjct 277223 CGGAGTCGAATGGAAGACGCATCTTGATGAAAGCATCGGCAAGTCCTTGAACTCCAAGAC 277282 Query 77527 CAATAGGTCTATGTCTCTTATTGGAAATTTTAGCTTCTGGAATAGGATAATAATTAATGT 77586 | ||||||| || | | | || || | || || || | ||| || ||||||||| Sbjct 277283 CGATAGGTCGGTGACGCATGTTTGAGTTCTTGGCCTCAATGACAGGGTAGAAATTAATGT 277342 Query 77587 CTATAATTTTATTGAGATTTCTAACAACTACTTTAACCACGTCCTTTAGTTTAAGAAAAT 77646 | || || || || | || | | |||||| || | ||||| ||| | Sbjct 277343 CAATGATCTTGTTCAAGTTCTTGGTCATGACTTTAGTGACCTGGCGGAGTTTCTCAAAGT 277402 Query 77647 C--AAATCTTCCATCT-ATAACAAACATGTTCAAAGCTA--TAGATGCTAGATTACAAAC 77701 | || | || | | |||||| | | ||| | |||| || || ||||| || Sbjct 277403 CGTAAGTAGTCTTGTTCACAACAAAG--GCTGGAAGGGAGATAGAAGCAAGGTTACAGAC 277460 Query 77702 TGCTACCTCATTAGCGTTGGCATATTGTATTATCTCGGTACATAGATTACTACATTTGAT 77761 || | || | || | || | | || || || || || ||||| || ||||| Sbjct 277461 GGCGATTTCGTCAGGAGAAGTGTACTCGACGATTTCTGTGCAAAGGTTACTGCACTTGAT 277520 Query 77762 AGTGCCCAGATTTTGTTGGTTGCTCTTTTTATTGCATGAGTCCTTATAAAGAATAAACGG 77821 ||||||| || |||||||| ||| | || || | || || || | || | || Sbjct 277521 GGTGCCCAAGTTCTGTTGGTTAGACTTGCTGTTACAGGCATCTTTGTACAACATGTATGG 277580 Query 77822 AGTCCCGGTTTCAATCTGTGATTCGATAATAGATTTCCAGACGACTCT-AGCTTTTATCA 77880 || || || || | || || || ||||| | | ||| | | ||| ||| || || | Sbjct 277581 GGTACCAGTCTCGGTTTGAGACTCAATAATGGCGTACCAAA-GCTTCTGAGCCTTGATAA 277639 Query 77881 TAGATTT--GTATCGCCTCTCT-CTTTCATATTGAGT-ATATAGCCGTTCAAATTCATCT 77936 ||| | | | || | | ||||||| || | ||| || |||||| | || Sbjct 277640 C---TTTACGGGCCAACCCTTTGCGTTCATAT-GATTCATAAAGTGCTTCAAACTTTTCG 277695 Query 77937 CCCCAAACATCATCCAATCCAGGGCATTCATTTGGGCACATCAATGACCAGTCACCATCT 77996 ||||| || ||||| || || |||| |||| || | | ||||||||||||| Sbjct 277696 CCCCAGCAGTCTTCCAACCCTGGCGCTTCACTTGGACAGAAGAGAGACCAGTCACCATTG 277755 Query 77997 TCCTTAACTCGTTTCATAAAGAGATCAGGTATCCATAGAGCAATAAATAGATCTCGGGTT 78056 || || || |||||||| | ||| ||||| |||||| || | ||||| | Sbjct 277756 CTCTCCACACGCTTCATAAACAAGTCACAGATCCAGAGAGCATAGAACAAGTCTCGAGCG 277815 Query 78057 CTATGTTCTTCATTTCCTGTATTCTTTTTAAGATCGAGAAACTCCATAATATCAGAATGC 78116 | | ||| || || || |||||||| || ||||| || || || | ||||| | ||| Sbjct 277816 CGGTTTTCCTCTTTACCAGTATTCTTCTTGAGATCAAGGAATTCAAAGATATCTGCGTGC 277875 Query 78117 CATGGTTCTAGATATATTGCCATAACTCCAGGTCGTTTATTACCTCCCTGATCTATATAT 78176 ||||| || | || || || | | || || || || || ||||| ||||| | ||| Sbjct 277876 CATGGCTCCAAGTAGATAGCAAAGGCCCCGGGACGCTTGTTGCCTCCTTGATCCACATAG 277935 Query 78177 CTGGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCGTTAGATGTTCCATTTGTT 78236 | || |||||||| | || | | ||| ||||| || || || || ||| || ||| Sbjct 277936 CGAGCAGTGTTATTGAAGACACGAAGCATCGGAATGATTCCATTCGAATGTCCGTTGGTT 277995 Query 78237 CCAGAAATATA 78247 |||| ||| || Sbjct 277996 CCAGCAATGTA 278006 >seq157 Length=558770 Score = 105 bits (116), Expect = 9e-18 Identities = 160/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 48461 CATCTGAAATCCGTAAAAACATCTCGCTTCTGTGATCTGTACCTCCGTACAAAATCGTTC 48520 || ||| || || || |||||||||||||||| ||||| || || | | |||| || Sbjct 323021 CACCTGGAAGCCATAGAAACATCTCGCTTCTGGAATCTGAACATCATTGGAGAATCTCTC 323080 Query 48521 AGCCAAATTCTCATTTACTATTCCATCACTAGCAGCAAAAAATGCTAATACATGTTTAAT 48580 | | | |||||||| || || || || |||||| || || || | || || || Sbjct 323081 AACAAGGTTCTCATTCACGATGCCGTCCGAAGCAGCGAAGAAGGCAAGGACGTGGGAAAC 323140 Query 48581 AAAATATTTTTCGTTGGAAGTCAGTTTATTCCAGTCATTGATATCTTTTGATATATCTAC 48640 ||| |||| |||| | | || || | |||||| | |||||| || | ||||| Sbjct 323141 AAAGAATTTCTCGTCATCACTGAGCTTCTCCCAGTCGCTAGCATCTTTGGACAAGTCTAC 323200 Query 48641 TTCTTCAGCTGTCCAAAATGATGCCTCTGCTTTTTTATACATATTCCA 48688 ||||||| | ||||| || ||||| |||||||| || ||||| | ||| Sbjct 323201 TTCTTCAACAGTCCAGAAGGATGCTTCTGCTTTCTTGTACATTTGCCA 323248 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 694665005371680