Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhizoclosmatium_20globosum_20[genbank_20GCA_5F002104985.1_202017-04- 20] 437 sequences; 57,018,351 total letters Query= NC_031465.1 Length=360610 Score E Sequences producing significant alignments: (Bits) Value seq335 154 3e-32 seq30 154 3e-32 seq90 105 2e-17 seq2 104 5e-17 >seq335 Length=386496 Score = 154 bits (170), Expect = 3e-32 Identities = 168/221 (76%), Gaps = 4/221 (2%) Strand=Plus/Minus Query 151886 GAGTCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCT 151945 ||| | ||||||||| ||||| ||||| || || ||||||||||| |||| | ||| | Sbjct 158879 GAGACGGAGGACAAGGTGAAGGGTAGATTCCTTCTGGATGTTGTAGTCGGAGAGAGTGCG 158820 Query 151946 CCCATCTTCTAG--GCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCT 152003 |||||||| || ||||| ||||||||||| || | |||||||| | | || || Sbjct 158819 GCCATCTTCAAGCTGCTTT--CCGGCGAAGATGAGACGTTGCTGGTCAGGTGGAATACCC 158762 Query 152004 TCCTTTTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGA 152063 ||||| |||||||| || |||||| | || | | |||| ||| ||| || |||||| Sbjct 158761 TCCTTGTCTTGAATCTTGGCCTTGACATTTTCGATGGTGTCAGAAGACTCAACCTCAAGA 158702 Query 152064 GTAATAGTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 || || || || |||||||| ||||| ||||||| |||||| Sbjct 158701 GTGATGGTCTTTCCCGTGAGGGTCTTGACGAAGATCTGCAT 158661 Score = 123 bits (136), Expect = 6e-23 Identities = 155/211 (73%), Gaps = 4/211 (2%) Strand=Plus/Plus Query 151896 ACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCT 151955 ||||| || |||||||| |||||||| |||||||| || | | |||| |||||||| Sbjct 39002 ACAAGGTGGAGAGTAGATTCTTTTTGAATGTTGTAGTCAGAGAGGGTTCGGCCATCTTCC 39061 Query 151956 AG--GCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTT 152013 | ||||| ||||| ||||| | | ||||||||| | | |||||||||||| || | Sbjct 39062 AACTGCTTT--CCGGCAAAGATCAAACGCTGCTGGTCAGGTGGGATTCCTTCCTTGTCCT 39119 Query 152014 GAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTT 152073 | || || |||||| |||| | | | || || || || ||||||||||| || | Sbjct 39120 GGATCTTGGCCTTGACATTCTCAATGGTATCGGAGGATTCAACCTCAAGAGTAATGGTCT 39179 Query 152074 TGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 | || || | |||||| || |||| |||||| Sbjct 39180 TTCCAGTCAAAGTCTTGACAAAGATCTGCAT 39210 Score = 111 bits (122), Expect = 4e-19 Identities = 153/212 (72%), Gaps = 4/212 (2%) Strand=Plus/Plus Query 151895 GACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTC 151954 ||| || |||||||| ||||| || |||||||||||||| | | || | ||||| || Sbjct 38545 GACGAGGTGAAGAGTGGACTCCTTCTGGATGTTGTAATCAGAAAGGGTACGGCCATCCTC 38604 Query 151955 TAG--GCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCT 152012 || ||||| || |||||||| | | ||||||||| | | |||||||||||| ||| Sbjct 38605 AAGTTGCTTT--CCAGCGAAGATCAAACGCTGCTGGTCAGGTGGGATTCCTTCCTTGTCT 38662 Query 152013 TGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTT 152072 || || || || || |||| | | | || || ||| ||||| | ||| || || Sbjct 38663 TGGATCTTGGCCTTCACGTTCTCAATGGTATCAGACGACTCAACTTCCAAAGTGATGGTC 38722 Query 152073 TTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 ||||| || | |||||| || |||| ||||| Sbjct 38723 TTGCCGGTCAAAGTCTTGACAAAGATTTGCAT 38754 Score = 105 bits (116), Expect = 2e-17 Identities = 153/214 (71%), Gaps = 4/214 (2%) Strand=Plus/Minus Query 151893 AGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCT 151952 ||||| | |||||||||||||| ||||| |||||||| || | | || | |||||| Sbjct 158337 AGGACCAAGTGAAGAGTAGACTCCTTTTGAATGTTGTAGTCAGAGAGGGTGCGGCCATCT 158278 Query 151953 TCTAG--GCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTT 152010 || | ||||| || ||||| || | | ||||||||| | | |||||||||||| | Sbjct 158277 TCCAACTGCTTT--CCAGCGAAAATCAAACGCTGCTGGTCTGGTGGGATTCCTTCCTTAT 158220 Query 152011 CTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAG 152070 | || || || ||||| | || | |||| || ||| ||||| | |||||| | Sbjct 158219 CCTGGATCTTGGCCTTGACGTTTTCAATAGTGTCGGATGACTCGACTTCCAAAGTAATGG 158160 Query 152071 TTTTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 | || || ||||| ||||| || |||| ||||| Sbjct 158159 TCTTTCCAGTGAGGGTCTTGACAAAGATTTGCAT 158126 >seq30 Length=118212 Score = 154 bits (170), Expect = 3e-32 Identities = 168/221 (76%), Gaps = 4/221 (2%) Strand=Plus/Minus Query 151886 GAGTCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCT 151945 ||| | ||||||||| ||||| ||||| || || ||||||||||| |||| | ||| | Sbjct 48371 GAGACGGAGGACAAGGTGAAGGGTAGATTCCTTCTGGATGTTGTAGTCGGAGAGAGTGCG 48312 Query 151946 CCCATCTTCTAG--GCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCT 152003 |||||||| || ||||| ||||||||||| || | |||||||| | || || || Sbjct 48311 GCCATCTTCAAGCTGCTTT--CCGGCGAAGATGAGACGTTGCTGGTCAGGCGGAATACCC 48254 Query 152004 TCCTTTTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGA 152063 ||||| |||||||| || ||||| | || | | |||| ||| ||| || |||||| Sbjct 48253 TCCTTGTCTTGAATCTTGGCCTTGACGTTTTCGATGGTGTCAGAAGACTCAACCTCAAGA 48194 Query 152064 GTAATAGTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 || || || || |||||||| ||||| ||||||| |||||| Sbjct 48193 GTGATGGTCTTTCCCGTGAGGGTCTTGACGAAGATCTGCAT 48153 Score = 114 bits (126), Expect = 3e-20 Identities = 155/214 (72%), Gaps = 4/214 (2%) Strand=Plus/Minus Query 151893 AGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCT 151952 ||||| | |||||||||||||| ||||| |||||||| || | | || | |||||| Sbjct 47829 AGGACCAAGTGAAGAGTAGACTCCTTTTGAATGTTGTAGTCAGAGAGGGTGCGGCCATCT 47770 Query 151953 TCTAG--GCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTT 152010 || | ||||| |||||||| || | | ||||||||| | | |||||||||||| | Sbjct 47769 TCCAACTGCTTT--CCGGCGAAAATCAAACGCTGCTGGTCTGGTGGGATTCCTTCCTTAT 47712 Query 152011 CTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAG 152070 | || || || ||||| | || | |||| || ||| ||||| | |||||| | Sbjct 47711 CCTGGATCTTGGCCTTGACGTTTTCAATAGTGTCGGATGACTCGACTTCCAAAGTAATGG 47652 Query 152071 TTTTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 | || || ||||| ||||| ||||||| ||||| Sbjct 47651 TCTTTCCAGTGAGGGTCTTGACGAAGATTTGCAT 47618 Score = 84.2 bits (92), Expect = 5e-11 Identities = 115/159 (72%), Gaps = 4/159 (3%) Strand=Plus/Minus Query 151947 CCATCTTCTAG--GCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTT 152004 || ||||| || ||||| || || ||||| || | ||||||||| | | |||||||| Sbjct 47306 CCGTCTTCGAGCTGCTTT--CCAGCAAAGATGAGACGCTGCTGGTCTGGTGGGATTCCTT 47249 Query 152005 CCTTTTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAG 152064 |||| || || ||||| |||||| |||| | |||| || ||| || || || | Sbjct 47248 CCTTGTCCTGGATTTTCGCCTTGACATTCTCGATAGTGTCAGAGGACTCGACCTCGAGGG 47189 Query 152065 TAATAGTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCA 152103 | || || ||||| ||||| ||||| || |||| |||| Sbjct 47188 TGATGGTCTTGCCGGTGAGGGTCTTAACAAAGATTTGCA 47150 >seq90 Length=625778 Score = 105 bits (116), Expect = 2e-17 Identities = 153/214 (71%), Gaps = 4/214 (2%) Strand=Plus/Minus Query 151895 GACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTC 151954 ||| || || || || ||||| || ||||||||||| || | | || | || || || Sbjct 499415 GACGAGGTGGAGGGTCGACTCCTTCTGGATGTTGTAGTCAGAAAGGGTGCGGCCGTCCTC 499356 Query 151955 TAG--GCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCT 152012 || ||||| ||||| ||||| || | ||||||||| | | |||||| ||||| || Sbjct 499355 GAGCTGCTTT--CCGGCAAAGATGAGACGCTGCTGGTCAGGTGGGATTCCCTCCTTGTCC 499298 Query 152013 TGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTT 152072 || || || ||||| | || | |||| ||| ||| || || || || || || Sbjct 499297 TGGATCTTGGCCTTGACGTTTTCGATAGTGTCGGAAGACTCCACCTCGAGGGTGATGGTC 499238 Query 152073 TTGCCCGTGAGAGTCTTCACGAAGACCTGCATTT 152106 || |||||||| ||||| ||||||| |||||||| Sbjct 499237 TTACCCGTGAGGGTCTTGACGAAGATCTGCATTT 499204 >seq2 Length=712398 Score = 104 bits (114), Expect = 5e-17 Identities = 153/215 (71%), Gaps = 4/215 (2%) Strand=Plus/Plus Query 151895 GACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTC 151954 |||||| || || || ||||| || || |||||||| || | | || | || || || Sbjct 184687 GACAAGGTGGAGGGTGGACTCCTTCTGAATGTTGTAGTCAGAAAGGGTACGGCCGTCCTC 184746 Query 151955 TAG--GCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCT 152012 || ||||| ||||||||||| || | ||||||||| | | |||||| ||||| || Sbjct 184747 GAGCTGCTTT--CCGGCGAAGATGAGACGCTGCTGGTCAGGTGGGATTCCCTCCTTGTCC 184804 Query 152013 TGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTT 152072 || || || ||||| |||| | | |||| ||| ||| || || || || || || Sbjct 184805 TGGATCTTGGCCTTGACGTTCTCGATGGTGTCGGAAGACTCAACCTCGAGGGTGATGGTC 184864 Query 152073 TTGCCCGTGAGAGTCTTCACGAAGACCTGCATTTT 152107 || ||||| || ||||| ||||| | ||||| || Sbjct 184865 TTTCCCGTAAGGGTCTTGACGAAAATTTGCATGTT 184899 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1153814339685227