Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhizoclosmatium_20globosum_20[genbank_20GCA_5F002104985.1_202017-04- 20] 437 sequences; 57,018,351 total letters Query= NC_033780.1 Length=144510 Score E Sequences producing significant alignments: (Bits) Value seq2 140 3e-28 seq90 138 1e-27 seq335 111 1e-19 seq30 111 1e-19 >seq2 Length=712398 Score = 140 bits (154), Expect = 3e-28 Identities = 169/230 (73%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 || || || ||||| || || || || || ||| ||||||||||||||| ||||| || Sbjct 184670 CCTCCACGGAGACGCAAGACAAGGTGGAGGGTGGACTCCTTCTGAATGTTGTAGTCAGAA 184729 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 ||||| || |||| ||||||||||| |||||||| || || ||||| ||||| | || Sbjct 184730 AGGGTACGGCCGTCCTCGAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCAGGTGGG 184789 Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGACACAGTGTCGCTCGACTCCACC 41815 | | |||||||||| ||| || ||| | | | |||||| ||||| ||| Sbjct 184790 ATTCCCTCCTTGTCCTGGATCTTGGCCTTGACGTTCTCGATGGTGTCGGAAGACTCAACC 184849 Query 41816 TCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCATGTT 41865 || | || || || || ||||| || ||||| |||||||| |||||||| Sbjct 184850 TCGAGGGTGATGGTCTTTCCCGTAAGGGTCTTGACGAAAATTTGCATGTT 184899 >seq90 Length=625778 Score = 138 bits (152), Expect = 1e-27 Identities = 169/228 (74%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 || || || ||||| || || || || || || ||||||||| ||||| ||||| || Sbjct 499432 CCTCCACGGAGACGCAAGACGAGGTGGAGGGTCGACTCCTTCTGGATGTTGTAGTCAGAA 499373 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 |||||||| |||| ||||||||||| ||||| || || || ||||| ||||| | || Sbjct 499372 AGGGTGCGGCCGTCCTCGAGCTGCTTTCCGGCAAAGATGAGACGCTGCTGGTCAGGTGGG 499313 Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCAC 41814 | | |||||||||| || | || || | ||| | | ||||||| |||||||| Sbjct 499312 ATTCCCTCCTTGTCC-TGGATCTTGGCCTTGACGTTTTCGATAGTGTCGGAAGACTCCAC 499254 Query 41815 CTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 ||| | || || || |||||||| || ||||| ||||| |||||||| Sbjct 499253 CTCGAGGGTGATGGTCTTACCCGTGAGGGTCTTGACGAAGATCTGCAT 499206 >seq335 Length=386496 Score = 111 bits (122), Expect = 1e-19 Identities = 163/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 || || || ||||| | || || || || ||| ||||||||||||||||||||||| Sbjct 38756 CCTCCACGGAGACGGAGAACAAGGTGAAGAGTGGATTCCTTCTGAATGTTATAGTCGGAC 38815 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 | ||||| | || || |||||||| || ||||| || || || || ||||| | ||| Sbjct 38816 AAAGTGCGACCATCTTCAAGCTGCTTTCCAGCGAAAATAAGACGTTGCTGGTCAGGTGGA 38875 Query 41756 ACGCTCTCCTTGTCCATGATTTTTTG-CTTCAACGACGACACAGTGTCGCTCGACTCCAC 41814 | | |||||| ||| ||| | || | ||||| | ||||||| ||||| || Sbjct 38876 ATACCCTCCTTATCC-TGAATCTTGGCCTTCACATTTTCAATAGTGTCGGATGACTCGAC 38934 Query 41815 CTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 |||| || || || || || || || ||||| ||||| |||||||| Sbjct 38935 TTCCAAGGTAATGGTCTTTCCAGTAAGTGTCTTGACGAAGATCTGCAT 38982 Score = 107 bits (118), Expect = 2e-18 Identities = 162/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 || || || ||||| | || || || || || |||||||| ||||| ||||||||| Sbjct 158887 CCTCCACGGAGACGGAGGACAAGGTGAAGGGTAGATTCCTTCTGGATGTTGTAGTCGGAG 158828 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 || ||||| | || || |||||||| |||||||| || || || || ||||| | ||| Sbjct 158827 AGAGTGCGGCCATCTTCAAGCTGCTTTCCGGCGAAGATGAGACGTTGCTGGTCAGGTGGA 158768 Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCAC 41814 | | |||||||| | ||| | || || | || | | ||||| ||||| || Sbjct 158767 ATACCCTCCTTGT-CTTGAATCTTGGCCTTGACATTTTCGATGGTGTCAGAAGACTCAAC 158709 Query 41815 CTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 ||| | || || || || ||||| || ||||| ||||| |||||||| Sbjct 158708 CTCAAGAGTGATGGTCTTTCCCGTGAGGGTCTTGACGAAGATCTGCAT 158661 Score = 93.3 bits (102), Expect = 4e-14 Identities = 159/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 || || || ||||| | |||| || || || |||||| |||||||| ||||| ||| Sbjct 158352 CCACCACGAAGACGAAGGACCAAGTGAAGAGTAGACTCCTTTTGAATGTTGTAGTCAGAG 158293 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 |||||||| | || || | |||||| || ||||| |||| ||||| ||||| | || Sbjct 158292 AGGGTGCGGCCATCTTCCAACTGCTTTCCAGCGAAAATCAAACGCTGCTGGTCTGGTGGG 158233 Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCAC 41814 | | ||||| ||| || | || || | ||| | | ||||||| ||||| || Sbjct 158232 ATTCCTTCCTTATCC-TGGATCTTGGCCTTGACGTTTTCAATAGTGTCGGATGACTCGAC 158174 Query 41815 CTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 |||| || || || || || || || ||||| || || || ||||| Sbjct 158173 TTCCAAAGTAATGGTCTTTCCAGTGAGGGTCTTGACAAAGATTTGCAT 158126 Score = 84.2 bits (92), Expect = 2e-11 Identities = 157/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 || || || ||||| || || || || || || ||||||||||||||| ||||| || Sbjct 159115 CCTCCACGAAGACGCAAGACAAGGTGGAGGGTAGACTCCTTCTGAATGTTGTAGTCAGAA 159056 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 ||||| || |||| || | |||||| || || || |||| || || ||||| | ||| Sbjct 159055 AGGGTACGGCCGTCTTCCAACTGCTTTCCAGCAAAGATCAAACGTTGCTGGTCGGGTGGA 158996 Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTTCAACG-ACGACACAGTGTCGCTCGACTCCAC 41814 | | ||||| ||| || | || || | |||| | | || || || || || Sbjct 158995 ATTCCTTCCTTATCC-TGGATCTTGGCCTTAACGTTCTCAATGGTATCAGAGGATTCAAC 158937 Query 41815 CTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 |||| || || || || || |||| ||||| ||||| || ||||| Sbjct 158936 TTCCAAAGTGATGGTCTTTCCAGTCAAAGTCTTGACGAAGATTTGCAT 158889 >seq30 Length=118212 Score = 111 bits (122), Expect = 1e-19 Identities = 163/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 || || || ||||| | || || || || || |||||||| ||||| ||||||||| Sbjct 48379 CCACCACGGAGACGGAGGACAAGGTGAAGGGTAGATTCCTTCTGGATGTTGTAGTCGGAG 48320 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 || ||||| | || || |||||||| |||||||| || || || || ||||| | ||| Sbjct 48319 AGAGTGCGGCCATCTTCAAGCTGCTTTCCGGCGAAGATGAGACGTTGCTGGTCAGGCGGA 48260 Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCAC 41814 | | |||||||| | ||| | || || | ||| | | ||||| ||||| || Sbjct 48259 ATACCCTCCTTGT-CTTGAATCTTGGCCTTGACGTTTTCGATGGTGTCAGAAGACTCAAC 48201 Query 41815 CTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 ||| | || || || || ||||| || ||||| ||||| |||||||| Sbjct 48200 CTCAAGAGTGATGGTCTTTCCCGTGAGGGTCTTGACGAAGATCTGCAT 48153 Score = 102 bits (112), Expect = 8e-17 Identities = 161/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 || || || ||||| | |||| || || || |||||| |||||||| ||||| ||| Sbjct 47844 CCACCACGAAGACGAAGGACCAAGTGAAGAGTAGACTCCTTTTGAATGTTGTAGTCAGAG 47785 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 |||||||| | || || | |||||| |||||||| |||| ||||| ||||| | || Sbjct 47784 AGGGTGCGGCCATCTTCCAACTGCTTTCCGGCGAAAATCAAACGCTGCTGGTCTGGTGGG 47725 Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCAC 41814 | | ||||| ||| || | || || | ||| | | ||||||| ||||| || Sbjct 47724 ATTCCTTCCTTATCC-TGGATCTTGGCCTTGACGTTTTCAATAGTGTCGGATGACTCGAC 47666 Query 41815 CTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 |||| || || || || || || || ||||| ||||| || ||||| Sbjct 47665 TTCCAAAGTAATGGTCTTTCCAGTGAGGGTCTTGACGAAGATTTGCAT 47618 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 462301474664400