Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhizophagus_20irregularis_20[genbank_20GCA_5F001593125.1_202016-03- 16] 11,196 sequences; 125,353,551 total letters Query= NC_001266.1 Length=159857 Score E Sequences producing significant alignments: (Bits) Value seq54 170 2e-37 >seq54 Length=215934 Score = 170 bits (188), Expect = 2e-37 Identities = 344/505 (68%), Gaps = 14/505 (3%) Strand=Plus/Minus Query 15912 TTTGGTAATCACTAACGCGTTTTTCGAAGAAGTTAGTTTTTCCCTCTAAAGATATATTTT 15971 |||| ||||| ||||||||||| ||||| || ||||| || | |||| || | Sbjct 102339 TTTGATAATCTGATACGCGTTTTTCAAAGAAATTTGTTTTACCTTGTAAACTAATTAAAT 102280 Query 15972 CCATAAAATCAAAGGGATTAGTAGCTGAAA---ATATCTTAGAGTACCCCAGTTCCGTAA 16028 ||||||||||||| ||||| ||||| | | || | || ||| || | Sbjct 102279 CCATAAAATCAAAAGGATTCT---CTGAATTATACAATTTTGCTCCACCAAGTGCCACTA 102223 Query 16029 CTAATCTATCTGCTACAAATTCTATATATTGACACATTAAGT-CGCAATTAATTCCTATA 16087 ||||||||| ||||||||||| ||||||| |||||| | ||| || || || || Sbjct 102222 ATAATCTATCAGCTACAAATTCAATATATTTTTTCATTAAATTCGCG-TTCATACCAATT 102164 Query 16088 AGTCGTACCGGAAGAGCTTTTGTTAAAAATTGTTGTTCTATCACAACCGCTTCTTTAATG 16147 | || || | |||| ||||||||||| ||||||||| ||||||||| || Sbjct 102163 AAATTAACTGGTAATGCTTCTGTTAAAAATTCTTGTTCTATTGTAACCGCTTCCGCTATA 102104 Query 16148 ATA---TCGGTGGCTCGTGTTTCAGACGGTGTATGGTTTAGGTGTTTAAACATTAGACAC 16204 ||| || | | |||| || ||| | | || || | || | ||||| Sbjct 102103 ATAGCTTCTACAGTTTTTGTTGGAGGTCGTGCACGA---AGATGAGTGAATAAGAGACAT 102047 Query 16205 GCGAAGTCGCAATGTAGTCCTTCGTCTCTGCTGATAAGTTCGTTGGAAAAAGTTAACCCT 16264 || || || ||||| | |||||| |||| || |||||||||||||||||||| ||| Sbjct 102046 GCAAAATCACAATGCAATCCTTCATCTCGAGAAATTAGTTCGTTGGAAAAAGTTAATCCT 101987 Query 16265 GGCATTTTTCCTCGTTTCTTTAACCAGAATATCGCAGCAAATGACCCCGAAAAGAATATA 16324 ||||| |||||| |||||||||||| || || | || || | || ||||||||||| Sbjct 101986 GGCATCATTCCTCTTTTCTTTAACCAAAAGATTGACGCGAAAGCTCCAGAAAAGAATATT 101927 Query 16325 CCCTCAACAGATGCAAAAGCGATTAATCGTTCCGCGTACGTAGCATCTTTATTACGAATC 16384 || ||||||| ||||| || | | ||||| || | | || || |||| |||| Sbjct 101926 CCTTCAACAGCGGCAAACGCTACAAGACGTTCAGCAAATGAAGATTCCTTATCGGAAATC 101867 Query 16385 CATTTCTGTACCCATTCGGCTTTTT 16409 ||| | |||| || ||||||| Sbjct 101866 CATCGAAGAGCCCAATCCGCTTTTT 101842 Score = 118 bits (130), Expect = 1e-21 Identities = 202/289 (70%), Gaps = 7/289 (2%) Strand=Plus/Minus Query 16472 ATATACGTATCAATCAGTAAACTGTACATTTCTGAGTGTATGTTCTCTATGGCTATCTGA 16531 ||||| | |||||||| | |||||||||||| || || || || || |||||| Sbjct 101700 ATATAAGAATCAATCAAGAGGGAGTACATTTCTGAATGGATATTTTCGATCATGATCTGA 101641 Query 16532 AATCCATAGAAGCATCGAGCCTCCGCTATTTGTACTTC--CACGTAAAATCGTTCCGCCA 16589 |||||||| || |||| || || | ||||| ||||| || ||||| |||||| | | Sbjct 101640 AATCCATAAAAACATCTTGCTTCTGGAATTTGGACTTCATTAC-TAAAA-CGTTCCACTA 101583 Query 16590 GGTTCTCATTCACGATACCGTCACTTGCAGCAAAAAACGCCAATATGTGCTTAATGAAAT 16649 || ||||| || ||||| || || ||||| || ||||| | ||| ||| || Sbjct 101582 AATTTTCATTGACAATACCATCCGAGGCGGCAAAGAAGGCCAAAACGTGAGAAATAAAGA 101523 Query 16650 ATTTTTCGTCAGATGTAAGAATA---TGCCAATCTTTTAAATCTTTGGATATATCCACTT 16706 ||||||| ||| |||| || | |||||| || | ||| ||||| | || |||| Sbjct 101522 ATTTTTCTTCATCGTTAAGTTTATACTCCCAATCATTCATATCCTTGGAAAGGTCAACTT 101463 Query 16707 CTTCTGGCGTCCAAAAGCTAGCCACTGCCTTTTTATACATTTTCCAAAT 16755 | || |||||||| ||| | |||||||| ||||||| ||| || Sbjct 101462 CCTCAACAGTCCAAAATGAAGCTTCGGCCTTTTTGTACATTTGCCAGAT 101414 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 511342827554720