Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhizophagus_20irregularis_20[genbank_20GCA_5F001593125.1_202016-03- 16] 11,196 sequences; 125,353,551 total letters Query= NC_001611.1 Length=185578 Score E Sequences producing significant alignments: (Bits) Value seq1647 338 7e-88 seq54 179 4e-40 seq370 102 1e-16 >seq1647 Length=14880 Score = 338 bits (374), Expect = 7e-88 Identities = 675/989 (68%), Gaps = 16/989 (2%) Strand=Plus/Minus Query 53950 TTCAAACTCGTCTCCCCAAACATTGTCCAATCCAGGACATTCATCCGGA-CACATCAACG 54008 |||||| || || |||||||||| || |||||| |||| ||||| || || ||| Sbjct 3414 TTCAAATTCATCACCCCAAACATCCATTAAACCAGGAGCTTCAGCCGGATCAAATAAACT 3355 Query 54009 ACCACTCTCCGTCATCCTTCA-CTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATA 54067 | | | || | | |||| | | ||||||||| ||||| | || |||||| || | Sbjct 3354 CCAATTATCATT--TGATTCAACCCTTTTCATAAAAAGATCCGAAACCCAAAGTGCATAA 3297 Query 54068 AATAGATCTCTGGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCC 54127 |||| ||| | | | | ||| || ||||| ||||| ||||| | ||| | || | Sbjct 3296 AATAAATCCCGTGCACGAACTTCTTCTTTTCCAGTATTTTTTTTTAAATCCATAAAATCA 3237 Query 54128 ATAATATCAGAATGCCACGGTTCCAAGTATATGGTCATAACTCCAGGCCGTTTGTTTCCT 54187 | ||| |||| |||||||| ||| || || || | | | || || |||||||||||| Sbjct 3236 AAAATGTCAGGATGCCACGTTTCTAAATAAATAGCAAACGCGCCCGGACGTTTGTTTCCT 3177 Query 54188 CCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCATTG 54247 || ||||| | |||||||| || ||||||||||| | ||||| |||||||| ||||| Sbjct 3176 CCTTGATCAACATATCTAGCAGTATTATTATAAACGCGTAACATGGGAATAATTCCATTT 3117 Query 54248 GATGCACCATTGGTCCCGGAGATATAGCTTCCACTGGCACGAATATTACTAATTGATAGA 54307 || |||||| || || | ||||| ||| | |||||||| ||| ||| | | Sbjct 3116 GAATAACCATTTGTTCCAGCAATATAAGATCCTGTCGCACGAATGTTATGAATGTTCACA 3057 Query 54308 CCTATCCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGATGCCC 54367 || || || ||||| | ||||| || | ||||||| ||| || ||||||||||| ||| Sbjct 3056 CCAATACCACCTGCAGTCTTAGAAATCATTGCGCATGTTTTCAAAGTATCATAGATTCCC 2997 Query 54368 TCTATACTATCATCCATCAT-GTTAAGTAGAAAACAGCTAGACATTTGGTGACGACTAGT 54426 ||||| |||||| |||| ||||| |||||||| || || | ||| | | | || Sbjct 2996 TCTATTGAATCATCTTTCATAGTTAA-AAGAAAACAACTCGAAAGTTGAGGTCTAGGTGT 2938 Query 54427 TCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATTGTA 54486 || |||||||| || || ||||| ||||| ||||| | ||||| || | |||||||| Sbjct 2937 GCCAGCATTAAACAAAGTCGGAGATGCGTGAGTAAAGAACTTTTCTGACATCAGATTGTA 2878 Query 54487 CGTCTCGATAGCTGAGTCTATATCCCATTGATGAATTCCTACTGCGACACGCATTAACAT 54546 || || ||||| | || ||||| | ||||| || || || || ||||| | ||| Sbjct 2877 AGTTTCAATAGCAGCTTCGATATCATCTCCGTGAATCCCAACCGCTACGCGCATAAGCAT 2818 Query 54547 GTGCTGAGGTCTTTCAACGATCTTGTTGTTTATTTTCAGCAAGTAGGATTTTTCCAAAGT 54606 || || || | || | | || |||| | | || ||| |||| | ||| Sbjct 2817 ATGTTGGGGACGCTCGGCAACTTTTCCACCTATTCGTAAAAGATAAGATCTTTCAAGAGT 2758 Query 54607 TTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAATAACTGAGTTGAGTTT 54666 |||||| |||||||| || ||| | | |||| || ||||| || || || ||||| Sbjct 2757 TTTAAATCCAAAATAATTATATTTATAATCTCTATCATAAATGATCGTAGAATTAAGTTT 2698 Query 54667 ATCCTTATATTTGTTAACTACATCCATGGTAATACTT----GAAATAATCGGAGAATGTT 54722 ||| | ||||| | ||| || ||| || ||||| || | | ||| Sbjct 2697 TTCC---GAATTGTTCATCACA-ATATTATAAGTTTTTTCAGAAATCATTGACGCGCGTT 2642 Query 54723 TCCCATTTTTAGGATTGACATAGTTAAATAAATCCTTCATC-ACTTCACTAAATAGtttt 54781 |||| |||| ||||| | ||| ||| | | || ||||| | || | ||| | |||| Sbjct 2641 TCCCTGTTTTCGGATTTATATAATTATAAAGAT-CTTCAACAACATTGGAAAAAACTTTT 2583 Query 54782 tttGTTTCTTTGTGTAGATTTGATACGGCTATTCTAGCGGCTAGAATGGCATAATCCGGA 54841 || |||||||| || ||||| || || || || | ||| || || | |||||| |||||| Sbjct 2582 TTAGTTTCTTTATGAAGATTAGAAACAGCAATACGAGCAGCAAGGACGGCATAGTCCGGA 2523 Query 54842 TGTTGTGTAGTACAAGTGGCTGCTATTTCGGCTGTCAGAGTGTCCAATTCTACCGTTGTT 54901 |||| || || | || || |||| || | || | | || ||||| || || | Sbjct 2522 TGTTTAGTCGTCATATACGCGGCCGTTTCTGCAGCCAAATTATCTAATTCAACAGTGCTA 2463 Query 54902 ACTCCATTATATATTCCTTGGATAACCTT 54930 || || | ||| | |||| || ||||| Sbjct 2462 ACACCTTGATAAACTCCTGAAATGACCTT 2434 Score = 118 bits (130), Expect = 1e-21 Identities = 146/200 (73%), Gaps = 0/200 (0%) Strand=Plus/Minus Query 53690 ACAAACATGTTCAATGCAATAGATGCCAGATTACAAACGGCTACCTCATTAGCATCCGCA 53749 ||||||||| |||||| ||| |||| ||||| || || || |||| | || | Sbjct 3745 ACAAACATGGGCAATGCTATACTAGCCAAGTTACATACAGCAACTTCATCCGGGCTCGAA 3686 Query 53750 TATTGTATTATCTCAGTGCAAAGATTACTACACTTGATGGTTCCTAAATTTTGTTGATTA 53809 |||| | ||||| || || | ||||||||| ||||| || || | ||||||||||||| Sbjct 3685 TATTCAACAATCTCTGTACACAAATTACTACATTTGATTGTACCAAGATTTTGTTGATTA 3626 Query 53810 CTCTTTTTGTTACACGCATCCTTATAAAGAATGAATGGCGTACCAGTTTCAATCTGGGAT 53869 || ||||| | ||| || || || || |||| ||||| ||||| ||||||||| Sbjct 3625 GATTTACGATTACAAGAATCTTTGTAGAGCATATATGGTGTACCCGTTTCGATCTGGGAT 3566 Query 53870 TCTATAATCGCTTTCCAGAC 53889 || | ||| ||| ||||||| Sbjct 3565 TCAAGAATTGCTGTCCAGAC 3546 >seq54 Length=215934 Score = 179 bits (198), Expect = 4e-40 Identities = 218/294 (74%), Gaps = 5/294 (2%) Strand=Plus/Minus Query 24396 TCTTTAACATATGTATCAATCAAAAGACTATACATTTCCGAATGAATGTTTTCAATGGCC 24455 || || | ||| | ||||||||| || |||||||| ||||| || ||||| || Sbjct 101706 TCCTTGATATAAGAATCAATCAAGAGGGAGTACATTTCTGAATGGATATTTTCGATCATG 101647 Query 24456 ATTTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGTACTTCTATACAAAATCGTTCT 24515 || |||||||| || |||||||| || || | ||| || ||||| ||| ||| ||||| Sbjct 101646 ATCTGAAATCCATAAAAACATCTTGCTTCTGGAATTTGGACTTCATTACTAAAACGTTCC 101587 Query 24516 GCTAAATTTTCATTCACTATTCCGTCACTGGCTGCAAAAAACGCCAATACATGTTTTATA 24575 ||||||||||||| || || || || ||| ||||| || ||||| || || ||| Sbjct 101586 ACTAAATTTTCATTGACAATACCATCCGAGGCGGCAAAGAAGGCCAAAACGTGAGAAATA 101527 Query 24576 AAATATTTTTCGTC-TGGTGTTAGTTTA---TTCCAATCATTGATATCTTTAGATATATC 24631 || ||||||| || | || | |||||| | ||||||||| ||||| || || | || Sbjct 101526 AAGAATTTTTCTTCATCGT-TAAGTTTATACTCCCAATCATTCATATCCTTGGAAAGGTC 101468 Query 24632 CACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACATATTCCAGAT 24685 ||||| || || ||||||||||| || || |||||||| ||||| | |||||| Sbjct 101467 AACTTCCTCAACAGTCCAAAATGAAGCTTCGGCCTTTTTGTACATTTGCCAGAT 101414 Score = 176 bits (194), Expect = 5e-39 Identities = 322/463 (70%), Gaps = 8/463 (2%) Strand=Plus/Minus Query 23831 CATAACTCCCATTTTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTACCTTC 23890 ||||||||| |||||| || || || |||||||| || ||||| |||||||||| Sbjct 102353 CATAACTCCAGCTTTTTGATAATCTGATACGCGTTTTTCAAAGAAATTTGTTTTACCTTG 102294 Query 23891 TAATGATATATTTTCCATGAAATCGGATGGATTGGTAACATTATAGATTCTTTTAAATCC 23950 ||| || ||||| ||||| | ||||| |||||| | | ||| | Sbjct 102293 TAAACTAATTAAATCCATAAAATCAAAAGGATTCTCTGAATTATACAAT-TTTGCTCCAC 102235 Query 23951 CAATT--CAGAAATCAATCTATCTGCGACAAACTCCATATATGTTTTCATCAT-TTCACA 24007 ||| | || ||| |||||||| || ||||| || |||||| ||||||| | ||| | Sbjct 102234 CAAGTGCCACTAAT-AATCTATCAGCTACAAATTCAATATATTTTTTCATTAAATTCGCG 102176 Query 24008 ATTCATTCCTATAAGTTTAACTGGAAGAGCCACAGTAAGAAATTCTTGTTCAATAGAGAC 24067 ||||| || || | |||||||| | || | || | |||||||||||| || | || Sbjct 102175 -TTCATACCAATTAAATTAACTGGTAATGCTTCTGTTAAAAATTCTTGTTCTATTGTAAC 102117 Query 24068 CGCGTCTGTTATAATAGATCTTACTGTTTCTTCACTCGGTGGATACAATAA-ATGTTTAA 24126 ||| || | |||||||| | ||| |||| | ||| | | || || ||| | | Sbjct 102116 CGCTTCCGCTATAATAGCTTCTACAGTTTTTGTTGGAGGTCG-TGCACGAAGATGAGTGA 102058 Query 24127 ACATCAAACATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAA 24186 | | | |||||| ||||| || || | || || |||| | ||||| ||||||||||| Sbjct 102057 ATAAGAGACATGCAAAATCACAATGCAATCCTTCATCTCGAGAAATTAGTTCGTTGGAAA 101998 Query 24187 ACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGATCCAG 24246 | || | ||| ||||| | || | || || | |||||| || ||||| || | ||||| Sbjct 101997 AAGTTAATCCTGGCATCATTCCTCTTTTCTTTAACCAAAAGATTGACGCGAAAGCTCCAG 101938 Query 24247 AAAAGAAAATTCCTTCTACTGCCGCAAAGGCAATAAGTCTTTC 24289 ||||||| |||||||| || || ||||| || | ||| | ||| Sbjct 101937 AAAAGAATATTCCTTCAACAGCGGCAAACGCTACAAGACGTTC 101895 >seq370 Length=116867 Score = 102 bits (112), Expect = 1e-16 Identities = 137/191 (72%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 54374 CTATCATCCATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGACGACTAGTTCCCGCA 54433 |||||||| |||| | | || ||| ||||| |||||||| | | || || ||| Sbjct 20320 CTATCATCTTTCATTTGCACTAAAAAGCAGCTTGACATTTGTGGTCTTGGTGTACCAGCA 20379 Query 54434 TTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATTGTACGTCTCG 54493 ||||| || || ||| || || ||||| |||| || || | || ||| || || || Sbjct 20380 TTAAACAAAGTTGGACTTGCATGAGTAAAATATTTCTCGGACATTAAATTATAAGTTTCA 20439 Query 54494 ATAGCTGAGTCTATATCCCATTGATGAATTCCTACTGCGACACGCATTAACATGTGCTGA 54553 ||||||| || ||||| | ||||||||| | | |||||||| |||||||| || Sbjct 20440 ATAGCTGCATCAATATCATAACCATGAATTCCAATAGAAACACGCATCAACATGTGTTGT 20499 Query 54554 GGTCTTTCAAC 54564 ||||||||||| Sbjct 20500 GGTCTTTCAAC 20510 Score = 95.1 bits (104), Expect = 1e-14 Identities = 195/286 (68%), Gaps = 8/286 (3%) Strand=Plus/Plus Query 53558 GGTCTATGTCTCTTATTAGAGATTTCAGCTTCTGGAATAGGATAATAATTAATATCTATA 53617 |||||||||||||| ||| ||||||||||||||| ||||||||||| ||| || Sbjct 19192 GGTCTATGTCTCTTGTTACTTTTTTCAGCTTCTGGAACGGGATAATAATTTTCATCAATG 19251 Query 53618 ATTTTATTGAGGTTTCTGACAATTACTTTGACCACATCCTTCAGTTTGAGAAAATCAAA- 53676 | |||||| | || | | || ||||| | | || | || || | |||||||| Sbjct 19252 ACTTTATTTAAATTCTTTATAACAACTTTAGCAATTTCATGAAGCTTCAAGAAATCAAAA 19311 Query 53677 -TTGTCCAT---CTATT-ACAAACATGTTCAATGCAATAGATGCCAGATTACAAACGGCT 53731 || || || |||| ||||| | |||| ||| || || | ||||||||||||| Sbjct 19312 GTTTTCGATTTGGTATTAACAAATTTAGGTAATGAAATTGAAGCTAAATTACAAACGGCT 19371 Query 53732 ACCTCATTAGCATCCGCATATTGTATTATCTCAGTGCAAAGATTACTACACTTGATGGTT 53791 || |||| | | | ||||| | || ||||| || | |||| || | || || Sbjct 19372 ACTTCATCGGGTGCAGTATATTCAACAATTTCAGTACATAAATTAGAGCATGTTATAGTA 19431 Query 53792 CCTAAATTTTGTTGATTACTCTTTTTGTTACACGCATCCTTATAAA 53837 || | ||| | ||||||| |||| ||||| | ||| |||||| Sbjct 19432 CCAAGATTCTTTTGATTAGATTTTTCATTACAAGAATC--TATAAA 19475 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 593638508662080