Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhizophagus_20irregularis_20[genbank_20GCA_5F001593125.1_202016-03- 16] 11,196 sequences; 125,353,551 total letters Query= NC_001962.1 Length=128413 Score E Sequences producing significant alignments: (Bits) Value seq218 95.1 1e-14 seq575 87.8 1e-12 seq1465 84.2 2e-11 >seq218 Length=131350 Score = 95.1 bits (104), Expect = 1e-14 Identities = 145/204 (71%), Gaps = 2/204 (1%) Strand=Plus/Minus Query 25035 ATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGCA 25094 |||||||| ||| |||| || | || || ||||| |||||| ||| || || | Sbjct 41557 ATGCAAATTTTCGTCAAGACCCTCACCGGTAAAACAATTACCCTTGAAGTTGAGTCCTCT 41498 Query 25095 GAGACGGTGG-CCGATCTCAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCA 25153 || || | | || | | ||||||| | || ||||| |||||| | || |||||| Sbjct 41497 GATACCATAGACCAAGTTAAAGCAAAGA-TTCAAGATAAGGAAGGTATTCCTCCAGATCA 41439 Query 25154 ACAAAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCCAAAACTATGGCCGATTACAA 25213 ||| | | ||||| || || ||||||||||||||| | ||| | | ||||| || Sbjct 41438 GCAACGCTTGATCTTCGCTGGTAAACAATTGGAAGATGGCCGTACTTTATCGGATTATAA 41379 Query 25214 TATTCAAAAGGAATCTACTCTTCA 25237 ||||||||| ||||||||||| || Sbjct 41378 TATTCAAAAAGAATCTACTCTCCA 41355 Score = 93.3 bits (102), Expect = 3e-14 Identities = 159/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 25035 ATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGCA 25094 |||||||| ||| |||| || | || || ||||| ||||| ||| || || | Sbjct 41785 ATGCAAATTTTCGTCAAGACTCTCACCGGTAAAACAATTACTCTTGAAGTCGAGTCCTCT 41726 Query 25095 GAGACGGTGGC-CGATCTCAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCA 25153 || || | | | | | ||||||| | || ||||| |||||| | ||| |||||| Sbjct 41725 GATACCATAGATCAAGTTAAAGCAAAGA-TTCAAGATAAGGAAGGTATCCCCCCAGATCA 41667 Query 25154 ACAAAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCCAAAACTATGGCCGATTACAA 25213 |||| | | ||||| || || ||||||||||||||| | ||| | | || || || Sbjct 41666 ACAACGCTTGATCTTCGCCGGTAAACAATTGGAAGATGGCCGTACTTTATCGGACTATAA 41607 Query 25214 TATTCAAAAGGAATCTACTCTTCACATGGTGTTACGATTACGAGGAGG 25261 ||||||||||||||| ||||| || | || | || ||| |||| || Sbjct 41606 TATTCAAAAGGAATCAACTCTCCATCTCGTACTTCGTTTAAGAGGTGG 41559 Score = 84.2 bits (92), Expect = 2e-11 Identities = 157/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 25035 ATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGCA 25094 |||||||| ||| | ||||| |||| || ||||| || || ||| || || | Sbjct 42241 ATGCAAATTTTCGTTAAAACGCTGACCGGTAAAACAATCACTCTTGAAGTAGAGTCCTCT 42182 Query 25095 GAGACGGTGG-CCGATCTCAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCA 25153 || || | | || | | ||||||| | || |||||||||||| | ||| |||||| Sbjct 42181 GATACCATAGACCAAGTTAAAGCAAAGA-TTCAAGATAAAGAAGGTATCCCCCCAGATCA 42123 Query 25154 ACAAAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCCAAAACTATGGCCGATTACAA 25213 |||| | | ||||| || || |||||||| |||||| || || | || || || Sbjct 42122 ACAACGCTTGATCTTCGCTGGTAAACAATTAGAAGATGGTCGTACATTGTCAGACTATAA 42063 Query 25214 TATTCAAAAGGAATCTACTCTTCACATGGTGTTACGATTACGAGGAGG 25261 |||||||| ||||| ||||| || | || | || ||| |||| || Sbjct 42062 CATTCAAAAAGAATCCACTCTCCATCTCGTACTCCGTTTAAGAGGTGG 42015 >seq575 Length=50698 Score = 87.8 bits (96), Expect = 1e-12 Identities = 161/234 (69%), Gaps = 4/234 (2%) Strand=Plus/Minus Query 25030 TAAAAATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAAC 25089 |||| |||||||| || | |||||| | || || ||||||||||| ||| ||| Sbjct 23141 TAAACATGCAAATTTTTGTTAAAACACTTACTGGTAAAACCATTACTTTAGAAGTTGAAA 23082 Query 25090 CCGCAGAGACGGTGGCCGATCTCAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAG 25149 || || | | | |||| |||||||| ||||||||||| | ||| | Sbjct 23081 GTAGCGATACCATCGATAAAGTCAAAGAAAAAATTCAAGATAAAGAAGGAATCCCCCCGG 23022 Query 25150 ATCAACAAAGACTTATCTTTGCGGGCAAACAATTGGAAGAT--TCCAAAACTATGGCCGA 25207 |||||||| | | || ||||| || ||||| || |||||| | ||| | |||| Sbjct 23021 ATCAACAACGTTTAATATTTGCTGGTAAACAGTTAGAAGATGGACGTTCACTTT--CCGA 22964 Query 25208 TTACAATATTCAAAAGGAATCTACTCTTCACATGGTGTTACGATTACGAGGAGG 25261 ||||||||||||||| ||||| || | ||| |||| | || ||||| || || Sbjct 22963 TTACAATATTCAAAAAGAATCAACATTACACTTGGTACTTCGTTTACGCGGTGG 22910 >seq1465 Length=43607 Score = 84.2 bits (92), Expect = 2e-11 Identities = 157/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 25035 ATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGCA 25094 |||||||| ||| | || || | || || ||||| ||||| ||| || || || Sbjct 27012 ATGCAAATTTTCGTTAAGACTCTTACCGGTAAAACTATTACTCTTGAAGTAGAGTCCTCA 26953 Query 25095 GAGACGGTGG-CCGATCTCAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCA 25153 || || | | || | | |||| || | || || |||||||| | ||| ||||| Sbjct 26952 GATACCATTGACCAAGTTAAAGCGAAGA-TTCAAGACAAAGAAGGCATTCCCCCGGATCA 26894 Query 25154 ACAAAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCCAAAACTATGGCCGATTACAA 25213 ||| | | |||||||| || ||||||||||||||| || || | |||||||| Sbjct 26893 GCAACGCTTGATCTTTGCCGGTAAACAATTGGAAGATGGACGTACCTTGTCAGATTACAA 26834 Query 25214 TATTCAAAAGGAATCTACTCTTCACATGGTGTTACGATTACGAGGAGG 25261 ||| |||||||| || ||||| || | ||| | || ||| |||| || Sbjct 26833 TATCCAAAAGGAGTCAACTCTCCATCTCGTGCTCCGTTTAAGAGGTGG 26786 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 410740746263144