Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhizophagus_20irregularis_20[genbank_20GCA_5F001593125.1_202016-03- 16] 11,196 sequences; 125,353,551 total letters Query= NC_002169.1 Length=135611 Score E Sequences producing significant alignments: (Bits) Value seq256 125 6e-24 seq575 122 8e-23 seq218 109 5e-19 seq325 91.5 1e-13 >seq256 Length=68436 Score = 125 bits (138), Expect = 6e-24 Identities = 146/197 (74%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 118542 GTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGAGCTGTTTTCCA 118601 || || ||||||||||| ||||| ||| | || || |||||| || ||||| ||| Sbjct 65896 GTGGATTCTTTTTGAATATTGTAGTCGGAAAGGGTTCGTCCATCCTCAAGTTGTTTACCA 65955 Query 118602 GCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTTTTGTTTA 118661 ||| | |||||||| ||||| || || || || |||||||| ||| |||||| ||| Sbjct 65956 GCGAAAATGAGACGTTGCTGGTCTGGGGGGATACCCTCCTTATCTTGAATTTTGGTTTTT 66015 Query 118662 ACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGCCGGTCAGAGTT 118721 || || |||| ||| |||| | ||| || || | ||| | ||||||||||| || || Sbjct 66016 ACTTGGTCGATGGTATCCGAGGACTCTACGTCCAAGGTGATGGTTTTGCCGGTGAGTGTC 66075 Query 118722 TTTACAAAAATCTGCAT 118738 ||||| || || ||||| Sbjct 66076 TTTACGAAGATTTGCAT 66092 Score = 122 bits (134), Expect = 8e-23 Identities = 153/210 (73%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 118529 CACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTC 118588 |||||| || | ||| |||||||||||||| ||||| || | || || |||||| Sbjct 65655 CACCAAATGAAGTGTTGACTCTTTTTGAATATTGTAGTCAGAAAGGGTTCGTCCATCCTC 65714 Query 118589 GAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGT 118648 || ||||| || ||| | |||||||| |||||||| || || || || || |||||| Sbjct 65715 AAGTTGTTTACCGGCGAAAATGAGACGTTGCTGATCTGGGGGAATACCTTCTTTGTCTTG 65774 Query 118649 AATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTT 118708 ||| ||| ||| || || |||| ||| || | ||| || || | || | ||||| Sbjct 65775 AATCTTTGCTTTTACTTGATCGATGGTATCGGAAGACTCAACTTCCAAAGTAATGGTTTT 65834 Query 118709 GCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 || || |||||||| |||||||| ||||| Sbjct 65835 TCCAGTTAGAGTTTTAACAAAAATTTGCAT 65864 Score = 116 bits (128), Expect = 3e-21 Identities = 146/198 (74%), Gaps = 2/198 (1%) Strand=Plus/Plus Query 118542 GTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGAGCTGTTTTCCA 118601 || || |||||||| ||||| ||||| | ||| || ||| || | || || ||| Sbjct 65440 GTTGATTCTTTTTGGATGTTATAATCCGAAAGAGTACGACCATCTTCCAATTGCTTACCA 65499 Query 118602 GCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTTTTGTTTA 118661 ||| | || | ||| |||||||| ||||| || ||||| || ||| |||||| |||| Sbjct 65500 GCGAAAATCAAACGTTGCTGATCTGGAGGGATACCCTCTTTATCTTGAATTTTGGTTTTA 65559 Query 118662 ACCTGTTCGACGGTGTCCG-TGCTCTCGACCTCGACGGTCACCGTTTTGCCGGTCAGAGT 118720 ||||| || | ||| || | || | |||||||| | ||| | ||| || || || || || Sbjct 65560 ACCTGATCAATGGTATCAGATGAT-TCGACCTCAAGGGTAATCGTCTTACCAGTAAGTGT 65618 Query 118721 TTTTACAAAAATCTGCAT 118738 |||||||||||| ||||| Sbjct 65619 TTTTACAAAAATTTGCAT 65636 Score = 100 bits (110), Expect = 2e-16 Identities = 160/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 118510 TACCTCCGCGTAATCTCAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGC 118569 |||||||||| | || | || | || | || ||||||||||||||||| ||||| Sbjct 66092 TACCTCCGCGAAGTCGAAGTACTAGATGAAGAGTTGACTCTTTTTGAATGTTATAATCTG 66151 Query 118570 TCATAGTGCGCGTATCCTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAG 118629 | || || || || || ||||| |||||| | || ||||| ||||| || || | Sbjct 66152 AAAGGGTACGACCGTCTTCAAGTTGTTTGCCAGCGAAAATAAGACGTTGCTGGTCTGGGG 66211 Query 118630 GTATGCCCTCCTTGTCTGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGA 118689 | || || || |||||| ||||||| |||||| || || | ||||| | || | Sbjct 66212 GAATTCCTTCTTTGTCTTGAATTTTTGCTTTAACTTGGTCAATAGTGTCGGAAGATTCAA 66271 Query 118690 CCTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATG 118739 | || | ||| | || || ||||| || ||||| || || || |||||| Sbjct 66272 CTTCAAGGGTGATTGTCTTTCCGGTAAGGGTTTTAACGAAGATTTGCATG 66321 >seq575 Length=50698 Score = 122 bits (134), Expect = 8e-23 Identities = 166/230 (72%), Gaps = 4/230 (2%) Strand=Plus/Plus Query 118512 CCTCCGCGTAATCTCAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTC 118571 || |||||||| | | |||||||| | ||| || ||||||||||| ||||||||| Sbjct 22910 CCACCGCGTAAACGAAGTACCAAGTGTAATGTTGATTCTTTTTGAATATTGTAATCG--G 22967 Query 118572 ATAGTGCGCGT--ATCCTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAG 118629 | |||| ||| ||| || | |||||| ||||| | || | ||| || ||||| || | Sbjct 22968 AAAGTGAACGTCCATCTTCTAACTGTTTACCAGCAAATATTAAACGTTGTTGATCCGGGG 23027 Query 118630 GTATGCCCTCCTTGTCTGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGA 118689 | || || || || ||| |||||||| ||| || | |||| ||| || | || || | Sbjct 23028 GGATTCCTTCTTTATCTTGAATTTTTTCTTTGACTTTATCGATGGTATCGCTACTTTCAA 23087 Query 118690 CCTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATG 118739 | || | || | ||||| || || || ||||| |||||||| |||||| Sbjct 23088 CTTCTAAAGTAATGGTTTTACCAGTAAGTGTTTTAACAAAAATTTGCATG 23137 >seq218 Length=131350 Score = 109 bits (120), Expect = 5e-19 Identities = 146/203 (72%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 118536 TGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGAGCTGT 118595 |||| ||||| ||||||||||| || ||||| | ||| || ||| || | ||| Sbjct 41355 TGGAGAGTAGATTCTTTTTGAATATTATAATCCGATAAAGTACGGCCATCTTCCAATTGT 41414 Query 118596 TTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTTT 118655 || |||||| |||| | || |||||||| ||||| || || ||||| ||| ||| ||| Sbjct 41415 TTACCAGCGAAGATCAAGCGTTGCTGATCTGGAGGAATACCTTCCTTATCTTGAATCTTT 41474 Query 118656 TGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGCCGGTC 118715 |||||| || || | ||| || | | ||| || || | ||| | ||||| ||||| Sbjct 41475 GCTTTAACTTGGTCTATGGTATCAGAGGACTCAACTTCAAGGGTAATTGTTTTACCGGTG 41534 Query 118716 AGAGTTTTTACAAAAATCTGCAT 118738 || || || || ||||| ||||| Sbjct 41535 AGGGTCTTGACGAAAATTTGCAT 41557 Score = 100 bits (110), Expect = 2e-16 Identities = 144/203 (71%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 118536 TGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGAGCTGT 118595 |||| || || ||||||||||| || ||||| || ||| ||| ||| || | ||| Sbjct 42267 TGGAGAGTTGATTCTTTTTGAATATTATAATCTGACAAAGTACGCCCATCTTCCAATTGT 42326 Query 118596 TTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTTT 118655 || |||||| |||| | || || ||||| ||||| || || ||||| ||| ||| ||| Sbjct 42327 TTACCAGCGAAGATTAAGCGTTGTTGATCTGGAGGAATTCCTTCCTTATCTTGAATCTTT 42386 Query 118656 TGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGCCGGTC 118715 |||||| || || | || || || |||||| || | ||| | ||||| || || Sbjct 42387 GCTTTAACTTGATCAATAGTATCATTGGACTCGACTTCAAGGGTAATGGTTTTCCCAGTA 42446 Query 118716 AGAGTTTTTACAAAAATCTGCAT 118738 || || || || || || ||||| Sbjct 42447 AGGGTCTTGACGAATATTTGCAT 42469 Score = 96.9 bits (106), Expect = 3e-15 Identities = 143/203 (70%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 118536 TGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGAGCTGT 118595 |||| || || |||||||||||||| || || || || || ||| || | ||| Sbjct 42039 TGGAGAGTGGATTCTTTTTGAATGTTATAGTCTGACAATGTACGACCATCTTCTAATTGT 42098 Query 118596 TTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTTT 118655 || |||||| |||| | || || ||||| || || || || || || ||| ||| ||| Sbjct 42099 TTACCAGCGAAGATCAAGCGTTGTTGATCTGGGGGGATACCTTCTTTATCTTGAATCTTT 42158 Query 118656 TGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGCCGGTC 118715 |||||| || || | ||| || | | ||| || || | || | ||||| |||||| Sbjct 42159 GCTTTAACTTGGTCTATGGTATCAGAGGACTCTACTTCAAGAGTGATTGTTTTACCGGTC 42218 Query 118716 AGAGTTTTTACAAAAATCTGCAT 118738 || ||||| || ||||| ||||| Sbjct 42219 AGCGTTTTAACGAAAATTTGCAT 42241 Score = 87.8 bits (96), Expect = 2e-12 Identities = 141/203 (69%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 118536 TGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGAGCTGT 118595 |||| || || ||||||||||| || ||||| || || || ||| || | ||| Sbjct 41811 TGGAGAGTTGATTCTTTTTGAATATTATAATCTGACAACGTACGACCATCTTCTAATTGT 41870 Query 118596 TTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTTT 118655 || |||||| |||| | || || ||||| ||||| || || || || ||| ||| || Sbjct 41871 TTACCAGCGAAGATCAAGCGTTGTTGATCTGGAGGGATACCTTCTTTATCTTGAATCTTC 41930 Query 118656 TGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGCCGGTC 118715 ||| || || || | ||| || | | |||||| || | || | ||||| ||||| Sbjct 41931 GTTTTTACTTGATCTATGGTATCAGAGGACTCGACTTCAAGAGTAATTGTTTTACCGGTG 41990 Query 118716 AGAGTTTTTACAAAAATCTGCAT 118738 || || || || ||||| ||||| Sbjct 41991 AGGGTCTTGACGAAAATTTGCAT 42013 >seq325 Length=113037 Score = 91.5 bits (100), Expect = 1e-13 Identities = 142/203 (70%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 118539 ATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGAGCTGTTTT 118598 ||||| |||||| || || || ||||| |||| || ||| ||| || | || || Sbjct 80820 ATTGTGCTCTCTTTCTGGATATTATAATCACTCAAGGTACGCTCATCTTCTAATTGACTT 80879 Query 118599 CCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTTTTGT 118658 ||||| | || | ||| || ||| || || || || ||||||||| || || | Sbjct 80880 CCAGCAAAAATAAAACGTTGACTATCAGGGGGAATTCCTTCCTTGTCTTGGATCTTGCAT 80939 Query 118659 TTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGCCGGTCAGA 118718 ||||| | || ||| || | ||| ||||| | ||| |||||||| ||||| || Sbjct 80940 TTAACTAGGCTGATGGTATCAGACGACTCTACCTCCAAGGTTACCGTTTTTCCGGTTAGT 80999 Query 118719 GTTTTTACAAAAATCTGCATGGC 118741 ||||||||||| | ||||||||| Sbjct 81000 GTTTTTACAAATACCTGCATGGC 81022 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 433771203299632