Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhizophagus_20irregularis_20[genbank_20GCA_5F001593125.1_202016-03- 16] 11,196 sequences; 125,353,551 total letters Query= NC_002486.1 Length=45636 Score E Sequences producing significant alignments: (Bits) Value seq4236 170 6e-38 >seq4236 Length=2144 Score = 170 bits (188), Expect = 6e-38 Identities = 343/500 (69%), Gaps = 8/500 (2%) Strand=Plus/Minus Query 23953 AATAGCTTTTCTAAAACTGATCATGATGCAACTTTTATGAGAATGAAGGAAGACCATATG 24012 ||||| | ||| ||||| || | ||||| || |||||| ||||||| || || | ||| Sbjct 505 AATAGTTATTCAAAAACGGACGAAGATGCGACATTTATGCGAATGAAAGATGATTACATG 446 Query 24013 AAAAATGGCCAACTTAAGCCAGGATACAATTTACAAATAGCGACAAATTCTCAATTTGTT 24072 |||||||| ||||| ||||||||||| ||||||||||| || ||| | |||||| Sbjct 445 AAAAATGGACAACTAAAGCCAGGATATAATTTACAAATTGCAACAGAAGGACAATTTACA 386 Query 24073 TTATCCTATGACCTATTTCAAAACCCGACAGATACTAGAACTTTAATTCCATTT-TTAAC 24131 ||| | ||| | || ||||| ||||| || | ||| ||||| |||||| || || Sbjct 385 TTAGCATATAGTGTTTTCTCTAACCCAACAGACACAAAAACATTAATACCATTTCTTGAC 326 Query 24132 AATGATTCAAAATACCTTCGGTTATTTACCGGAGTATATTGTGGCTGATGCAGGTTATGG 24191 | ||| || | | | | | ||||| ||| |||| ||||| ||||| || ||||| Sbjct 325 CA-AATTGAAGAACAGTACTTTGAATTACCAGAGCATATCGTGGCAGATGCCGGATATGG 267 Query 24192 TAGTGAGCAAAACTATATGGCTATTATAGATGATTTTAATAAAACGCCACTTATTACGTA 24251 ||||| ||||| ||| | ||| | || ||| | ||| || | ||||| | Sbjct 266 CAGTGAACAAAATTATGAAGACATTCTTTCGAATCGTAAAAGAACACCGTTAATTAC--A 209 Query 24252 TGGTATGTTTA-TTAAA-GATAAAACGAGAAAGTTTAAAAGTGACATTTTTAACACTCAA 24309 | || || ||||| || ||| ||||| ||||| | ||| ||| || || | Sbjct 208 TACAATCACTACTTAAACGAGCAAAAAAGAAAATTTAAGAATGATCCTTTCAAAACAAAT 149 Query 24310 AACTGGAAATATGACGAACTTAATGATGAATTTATATGTCCTAATAACAAAAGAAT-AGG 24368 |||||| | ||||| ||| | | |||| || || ||||| ||| ||||| || | | | Sbjct 148 AACTGGGATTATGATGAAATAAGTGATACATATACTTGTCCGAATGACAAACGACTAACG 89 Query 24369 TTTTAAAAGATATGCATACCGTAATAATAGATATGGTTTTAAACGTGACTTCAAACTATA 24428 || || | | ||| |||| | ||| | || || |||| || || ||| |||| Sbjct 88 TTCCAATACCACTCAATA-CGTACTGATAAAACAGGATTCCAACGCGAATTTAAAATATA 30 Query 24429 TGAATGCGATGACTGTTCAG 24448 |||||| || |||||| ||| Sbjct 29 TGAATGTGAAGACTGTACAG 10 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 145894200422096