Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhizophagus_20irregularis_20[genbank_20GCA_5F001593125.1_202016-03- 16] 11,196 sequences; 125,353,551 total letters Query= NC_002520.1 Length=232392 Score E Sequences producing significant alignments: (Bits) Value seq575 123 4e-23 seq218 113 7e-20 seq770 100 4e-16 seq256 96.9 5e-15 seq1592 93.3 6e-14 seq566 91.5 2e-13 seq1465 89.7 8e-13 >seq575 Length=50698 Score = 123 bits (136), Expect = 4e-23 Identities = 171/245 (70%), Gaps = 3/245 (1%) Strand=Plus/Plus Query 146068 TACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTGAAAGAGTTCTGCTATCATC 146127 |||||| ||||| || |||||||| ||||| ||||| ||||| | | | ||| || Sbjct 22927 TACCAAGTGTAATGTTGATTCTTTTTGAATATTGTAATCGGAAAGTGAACGTCCATCTTC 22986 Query 146128 TAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGAATTCCTTCTTTATCTTG 146187 ||| ||||| |||||||| || || | ||| |||||||| || ||||||||||||||||| Sbjct 22987 TAACTGTTTACCAGCAAATATTAAACGTTGTTGATCCGGGGGGATTCCTTCTTTATCTTG 23046 Query 146188 NNNNNNNNNNNNNNNNNNNNNNNNAGTATCTGAACTTTCTACTTCTAGTGTGATTGTTTT 146247 ||||| |||||| ||||||| || || ||||| Sbjct 23047 AATTTTTTCTTTGACTTTATCGATGGTATCGCTACTTTCAACTTCTAAAGTAATGGTTTT 23106 Query 146248 ACCTGTTAATGTTTTAATGAATATTTGCATTTTATTAGAAAAATAT-TTGTTaaaaaaaa 146306 ||| || | |||||||| || |||||||| | ||| |||||| | ||| ||||||| Sbjct 23107 ACCAGTAAGTGTTTTAACAAAAATTTGCATGT--TTAAAAAAATTTATTGGGGAAAAAAA 23164 Query 146307 TAATT 146311 | ||| Sbjct 23165 TTATT 23169 >seq218 Length=131350 Score = 113 bits (124), Expect = 7e-20 Identities = 107/137 (78%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 146051 CCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTGAA 146110 ||||| | ||| | | ||| | ||| | |||||||||||| ||||||||||| || Sbjct 41331 CCACCCCGAAGACGAAGTACGAGATGGAGAGTAGATTCTTTTTGAATATTATAATCCGAT 41390 Query 146111 AGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGA 146170 | ||| | || ||| || |||||||| ||||| || ||||| | ||||||||| |||||| Sbjct 41391 AAAGTACGGCCATCTTCCAATTGTTTACCAGCGAAGATCAAGCGTTGCTGATCTGGAGGA 41450 Query 146171 ATTCCTTCTTTATCTTG 146187 || ||||| |||||||| Sbjct 41451 ATACCTTCCTTATCTTG 41467 Score = 104 bits (114), Expect = 3e-17 Identities = 105/137 (77%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 146051 CCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTGAA 146110 |||||||| | | | ||| | ||| | ||| |||||||| |||||||||||||| Sbjct 41787 CCACCTCTTAAACGGAGTACGAGATGGAGAGTTGATTCTTTTTGAATATTATAATCTGAC 41846 Query 146111 AGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGA 146170 | || | | ||| ||||||||||| ||||| || ||||| | ||| ||||| ||||| Sbjct 41847 AACGTACGACCATCTTCTAATTGTTTACCAGCGAAGATCAAGCGTTGTTGATCTGGAGGG 41906 Query 146171 ATTCCTTCTTTATCTTG 146187 || |||||||||||||| Sbjct 41907 ATACCTTCTTTATCTTG 41923 Score = 104 bits (114), Expect = 3e-17 Identities = 105/137 (77%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 146051 CCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTGAA 146110 |||||||| | | | ||| | ||| | ||| |||||||| |||||||||||||| Sbjct 42243 CCACCTCTTAAACGGAGTACGAGATGGAGAGTTGATTCTTTTTGAATATTATAATCTGAC 42302 Query 146111 AGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGA 146170 | ||| | | ||| || |||||||| ||||| || || || | ||| ||||| |||||| Sbjct 42303 AAAGTACGCCCATCTTCCAATTGTTTACCAGCGAAGATTAAGCGTTGTTGATCTGGAGGA 42362 Query 146171 ATTCCTTCTTTATCTTG 146187 |||||||| |||||||| Sbjct 42363 ATTCCTTCCTTATCTTG 42379 Score = 102 bits (112), Expect = 1e-16 Identities = 154/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 146051 CCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTGAA 146110 |||||||| | | | ||| | ||| | ||| |||||||| || ||||| ||||| Sbjct 42015 CCACCTCTTAAACGGAGTACGAGATGGAGAGTGGATTCTTTTTGAATGTTATAGTCTGAC 42074 Query 146111 AGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGA 146170 | || | | ||| ||||||||||| ||||| || ||||| | ||| ||||| || || Sbjct 42075 AATGTACGACCATCTTCTAATTGTTTACCAGCGAAGATCAAGCGTTGTTGATCTGGGGGG 42134 Query 146171 ATTCCTTCTTTATCTTGNNNNNNNNNNNNNNNNNNNNNNNNAGTATCTGAACTTTCTACT 146230 || |||||||||||||| ||||| || |||||| Sbjct 42135 ATACCTTCTTTATCTTGAATCTTTGCTTTAACTTGGTCTATGGTATCAGAGGACTCTACT 42194 Query 146231 TCTAGTGTGATTGTTTTACCTGTTAATGTTTTAATGAATATTTGCAT 146277 || || |||||||||||||| || | ||||||| ||| |||||||| Sbjct 42195 TCAAGAGTGATTGTTTTACCGGTCAGCGTTTTAACGAAAATTTGCAT 42241 >seq770 Length=40003 Score = 100 bits (110), Expect = 4e-16 Identities = 103/132 (78%), Gaps = 2/132 (2%) Strand=Plus/Minus Query 146051 CCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTT-TAGATATATTATAATCTGA 146109 ||||| | ||||| | ||| | ||| || ||||| |||| | || |||||||||||||| Sbjct 15279 CCACCACGTAGTCTAAGTACAAGATGCAACGTAGACTCTTCTTGA-ATATTATAATCTGA 15221 Query 146110 AAGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGG 146169 | |||| | | ||| || ||||| || ||||||||||| | | |||||| || ||||| Sbjct 15220 TAAAGTTTTTCCATCCTCCAATTGCTTACCAGCAAAAATAATACGTTGCTGGTCAGGAGG 15161 Query 146170 AATTCCTTCTTT 146181 ||| |||||||| Sbjct 15160 AATGCCTTCTTT 15149 >seq256 Length=68436 Score = 96.9 bits (106), Expect = 5e-15 Identities = 86/108 (80%), Gaps = 0/108 (0%) Strand=Plus/Plus Query 146080 AGTAGATTCTTTAGATATATTATAATCTGAAAGAGTTCTGCTATCATCTAATTGTTTTCC 146139 ||| |||||||| || |||||||| |||||||| | | ||| || ||||| || || Sbjct 65439 AGTTGATTCTTTTTGGATGTTATAATCCGAAAGAGTACGACCATCTTCCAATTGCTTACC 65498 Query 146140 AGCAAAAATCAATCTTTGCTGATCCGGAGGAATTCCTTCTTTATCTTG 146187 ||| |||||||| | ||||||||| ||||| || || ||||||||||| Sbjct 65499 AGCGAAAATCAAACGTTGCTGATCTGGAGGGATACCCTCTTTATCTTG 65546 Score = 93.3 bits (102), Expect = 6e-14 Identities = 152/227 (67%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 146051 CCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTGAA 146110 || || | ||||| | ||| | ||| | ||| || ||||| || |||||||||||| Sbjct 66094 CCTCCGCGAAGTCGAAGTACTAGATGAAGAGTTGACTCTTTTTGAATGTTATAATCTGAA 66153 Query 146111 AGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGA 146170 || || | | || || | |||||| ||||| ||||| | | |||||| || || ||| Sbjct 66154 AGGGTACGACCGTCTTCAAGTTGTTTGCCAGCGAAAATAAGACGTTGCTGGTCTGGGGGA 66213 Query 146171 ATTCCTTCTTTATCTTGNNNNNNNNNNNNNNNNNNNNNNNNAGTATCTGAACTTTCTACT 146230 ||||||||||| ||||| ||| || ||| ||| ||| Sbjct 66214 ATTCCTTCTTTGTCTTGAATTTTTGCTTTAACTTGGTCAATAGTGTCGGAAGATTCAACT 66273 Query 146231 TCTAGTGTGATTGTTTTACCTGTTAATGTTTTAATGAATATTTGCAT 146277 || || |||||||| || || || | ||||||| ||| |||||||| Sbjct 66274 TCAAGGGTGATTGTCTTTCCGGTAAGGGTTTTAACGAAGATTTGCAT 66320 >seq1592 Length=32188 Score = 93.3 bits (102), Expect = 6e-14 Identities = 101/134 (75%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 146051 CCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTGAA 146110 ||||| || | ||||||||| ||||||| || || || | ||||||| ||||| Sbjct 12407 CCACCCCTTAATCTTAATACTAAATGTAGCGTGGACTCAACACATATATTGTAATCACTT 12466 Query 146111 AGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGA 146170 | ||| | || ||| || | ||| || ||||||||||| |||||||| ||||| || || Sbjct 12467 AAAGTACGGCCATCTTCAAGTTGCTTACCAGCAAAAATTAATCTTTGTTGATCTGGTGGT 12526 Query 146171 ATTCCTTCTTTATC 146184 || |||||||| || Sbjct 12527 ATACCTTCTTTTTC 12540 >seq566 Length=43303 Score = 91.5 bits (100), Expect = 2e-13 Identities = 100/132 (76%), Gaps = 6/132 (5%) Strand=Plus/Minus Query 146051 CCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTGAA 146110 |||||||| | ||||||||| ||||||| ||||||||| | ||||||||||||| Sbjct 34498 CCACCTCTTAATCTTAATACTAAATGTACAGTAGATTCATGTTGTATATTATAATCTTCT 34439 Query 146111 AGAGTTCTGCTATCATCT---AATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGA 146167 | || ||| ||||||| | |||||| || || | || ||| | ||| ||||| ||| Sbjct 34438 AAAG---TGCGATCATCTTCAAGTTGTTTACCGGCCATAAGCAAACGTTGTTGATCTGGA 34382 Query 146168 GGAATTCCTTCT 146179 || || |||||| Sbjct 34381 GGTATACCTTCT 34370 >seq1465 Length=43607 Score = 89.7 bits (98), Expect = 8e-13 Identities = 124/182 (68%), Gaps = 0/182 (0%) Strand=Plus/Plus Query 146096 ATATTATAATCTGAAAGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTT 146155 ||||| |||||||| | || | | ||| || |||||||| || ||||| ||||| | | Sbjct 26831 ATATTGTAATCTGACAAGGTACGTCCATCTTCCAATTGTTTACCGGCAAAGATCAAGCGT 26890 Query 146156 TGCTGATCCGGAGGAATTCCTTCTTTATCTTGNNNNNNNNNNNNNNNNNNNNNNNNAGTA 146215 ||||||||||| ||||| |||||||| ||||| ||| Sbjct 26891 TGCTGATCCGGGGGAATGCCTTCTTTGTCTTGAATCTTCGCTTTAACTTGGTCAATGGTA 26950 Query 146216 TCTGAACTTTCTACTTCTAGTGTGATTGTTTTACCTGTTAATGTTTTAATGAATATTTGC 146275 ||||| |||||||| || || || |||||||| || | || |||| ||| |||||| Sbjct 26951 TCTGAGGACTCTACTTCAAGAGTAATAGTTTTACCGGTAAGAGTCTTAACGAAAATTTGC 27010 Query 146276 AT 146277 || Sbjct 27011 AT 27012 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 743422343480320