Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhizophagus_20irregularis_20[genbank_20GCA_5F001593125.1_202016-03- 16] 11,196 sequences; 125,353,551 total letters Query= NC_002686.2 Length=124784 Score E Sequences producing significant alignments: (Bits) Value seq37 134 1e-26 >seq37 Length=134598 Score = 134 bits (148), Expect = 1e-26 Identities = 261/382 (68%), Gaps = 9/382 (2%) Strand=Plus/Minus Query 20400 AATGGCTTTGCCTCCATGTCATATGCTATGCCAATTTTACGTTGCTAAT---AATGAATT 20456 |||||| || || |||||||||||| | |||||||| || || | ||| || ||| Sbjct 88580 AATGGCATTACCACCATGTCATATGTTTTGCCAATTCTATGTATCAAATACGAAAAGATT 88521 Query 20457 GTCGTGTCAAATGTATCAACGATCCGCTGATATGGGACTGGGTGTTCCTTTCAATATTGC 20516 ||||||| | |||||| |||| |||| | ||||| ||||| || || || ||||| Sbjct 88520 ATCGTGTCTTCTTTATCAAAGATCATGTGATGTTGGACTTGGTGTACCATTTAACATTGC 88461 Query 20517 AAGTTATGCGCTGCTTACGTATATGATTGCACATGTTACAGATTTAAAAACGGGTGACTT 20576 ||| ||||| | | || |||||||||| ||||| || | || | | ||||| || Sbjct 88460 AAGCTATGCTATATTAACTCATATGATTGCTCATGTAACGGGTTGTAGTCCTGGTGAATT 88401 Query 20577 AGTCCACACCATAGGAGACGCGCATATTTACCTTAATCATATAGAACCTTTAAAATTACA 20636 | || ||||| || || | ||||| || | ||||||| | |||||||| || Sbjct 88400 TATTCATACCATGGGTGATACTCATATATATAATGATCATATTAATGCTTTAAAAACTCA 88341 Query 20637 GTTAACACGACAACCAAAACAATTCCCAACTC-TTCGCA--TTACTCGAACTGTTAAAGA 20693 | ||| |||||||| ||| | ||| || | | ||| || | |||| | Sbjct 88340 AATCGAACGTGAACCAAAAGCATTTC---CTCGTTTGAAATTTAGACGCAAAATTAATAA 88284 Query 20694 TATTAACGATTTTAAAGCTGATGATTTTGTGTTAGAAGGTTATAATCCCCATAATTCAAT 20753 |||| | ||||||||| |||||||||| | | |||||| | || ||| | ||| Sbjct 88283 TATTGATGATTTTAAATATGATGATTTTATTATTACTGGTTATGAACCTCATCCTCAAAT 88224 Query 20754 TCCAATGGAAATGTCTGTTTAA 20775 |||| |||||||||| ||| Sbjct 88223 CAAAATGAAAATGTCTGTATAA 88202 Score = 132 bits (146), Expect = 4e-26 Identities = 292/431 (68%), Gaps = 14/431 (3%) Strand=Plus/Minus Query 19961 ATGGTGTACAAAAAACAGATCGAACCGGAACTGGAACGTTATCTGTATTTGG---AATGC 20017 |||||| ||| | || |||||| |||||||| ||||| ||||| |||||| | || Sbjct 89099 ATGGTGAACATAGAAAAGATCGCACCGGAACAGGAACCTTATCAATATTTGCGCCACCGC 89040 Query 20018 AATCTCGATATAACTTGAGAAATGA-ATTT--CCCTTATTAACTACGAAACGGGTATTTT 20074 | | | | | || | || | |||| || |||||||| || || || || ||| Sbjct 89039 AGTTGGGCTTTTCTTTACGTGATAATATTTTACCTTTATTAACAACTAAGCGCGTTTTTA 88980 Query 20075 GGAAAGGCGTTGTTGAAGAGTTATTATGGTTTATTAAAGGATCAACAAATTCTACCGAGC 20134 | | || | ||||| |||||||||||||||||||| |||||| | | | | Sbjct 88979 CGCGTGCTATTATAGAAGAATTATTATGGTTTATTAAAGGTAATACAAAT---AGCAAAC 88923 Query 20135 TTGTA---GAAAAAGGAGTTAAGATTTGGAGCGCACATGGATCTAAGCAATTTTTACACA 20191 | || |||||||| || | |||||| || |||| ||| ||| ||| | | Sbjct 88922 ATTTAACCGAAAAAGGTATTCATATTTGGGACGGTAATGGTTCTCGTGAATATTTGGATA 88863 Query 20192 GCAATGGATT-TGACAACCGTCAAGAGGGGGATTTGGGTCCTGTGTATGGATTTCAATGG 20250 | ||| | | ||| | |||| || |||||||||||||| |||||||| |||||| Sbjct 88862 AAATTGGGCTATCACATA-GAAAAGAAGGTGATTTGGGTCCTGTTTATGGATTCCAATGG 88804 Query 20251 AGACATTTTGGAGCTGAATATGTTGACATGAACACAAATTATTTTGGACAAGGAGTAGAT 20310 ||||||||||| ||||| || |||| | || |||| ||| |||| || ||| Sbjct 88803 AGACATTTTGGTGCTGAGTACATTGATTGCGATACGGATTACACTGGTAAAGGTGTTGAT 88744 Query 20311 CAATTACAAAATGTTATTAATTTAATTAAAACGAACCCAAACGACAGAAGAATTATTTTA 20370 ||| | ||| | || || || |||||||| | ||||| || ||| |||| ||| | Sbjct 88743 CAACTGCAAGAGGTCATCGATAAAATTAAAAATACTCCAAATGATAGACGAATCATTCTC 88684 Query 20371 TGCGCCTGGAA 20381 | || ||||| Sbjct 88683 AGTGCTTGGAA 88673 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 399129530844220