Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhizophagus_20irregularis_20[genbank_20GCA_5F001593125.1_202016-03- 16] 11,196 sequences; 125,353,551 total letters Query= NC_003389.1 Length=146454 Score E Sequences producing significant alignments: (Bits) Value seq1647 224 9e-54 seq54 176 4e-39 seq370 100 3e-16 >seq1647 Length=14880 Score = 224 bits (248), Expect = 9e-54 Identities = 469/695 (67%), Gaps = 4/695 (1%) Strand=Plus/Minus Query 37941 AAAATCATTCCCCCATACATCGCATAATCCTGGACATTCGCATGGACACATTAGAGACCA 38000 ||| |||| ||||| ||||| ||| || ||| ||| ||| | || | ||| Sbjct 3411 AAATTCATCACCCCAAACATCCATTAAACCAGGAGCTTCAGCCGGATCAAATAAACTCCA 3352 Query 38001 TTCTTCATCTTTTTCTACGCGTTCCATAAATAAATCAGGTACCCATAATGCAGTAAATAA 38060 | |||| | ||| || | || |||||| | ||| | ||||| | |||| |||||| Sbjct 3351 ATTATCATTTGATTCAACCCTTTTCATAAAAAGATCCGAAACCCAAAGTGCATAAAATAA 3292 Query 38061 ATCTTTGGTTCTATATTCTTCGTTCCCTACATTCTTTCTTAAGCTTAGAAAATCGAATAT 38120 ||| | | | |||||| || || ||| ||| |||| | |||||| || || Sbjct 3291 ATCCCGTGCACGAACTTCTTCTTTTCCAGTATTTTTTTTTAAATCCATAAAATCAAAAAT 3232 Query 38121 ATCAGCGTGCCATGGTTCTATATAAATCGACATTGCTCCTGGTCTTTTATCACCTCCCTG 38180 |||| ||||| | ||||| |||||| | | || || || | ||| | ||||| || Sbjct 3231 GTCAGGATGCCACGTTTCTAAATAAATAGCAAACGCGCCCGGACGTTTGTTTCCTCCTTG 3172 Query 38181 ATTAATATATCTAACTGTGTTATTATATATTCTTAACATAGGTACTATACCATTAGATTT 38240 || || ||||||| | || |||||||| | | |||||| || | || ||||| || | Sbjct 3171 ATCAACATATCTAGCAGTATTATTATAAACGCGTAACATGGGAATAATTCCATTTGAATA 3112 Query 38241 GCCGTTTATACCGGATATATAAGTACCCTTAGCTCGTATATTACTTATCGACAATCCTAT 38300 || ||| | || | ||||||| || | || || || ||| || || || || Sbjct 3111 ACCATTTGTTCCAGCAATATAAGATCCTGTCGCACGAATGTTATGAATGTTCACACCAAT 3052 Query 38301 TCCACCTGCATGTTTTGATATTAAAGCGCATTGTTTTAACGTATCAAATATACCTTCTAT 38360 ||||||||| || || || | |||||| ||| || |||||| | || || ||||| Sbjct 3051 ACCACCTGCAGTCTTAGAAATCATTGCGCATGTTTTCAAAGTATCATAGATTCCCTCTAT 2992 Query 38361 ACTGTCATCCTTTATTGGTAGTATAAAACAACTAGACATTTGAGGCAATGGAGTTCCGGC 38420 ||||| || || | || | ||||||||| || | |||||| || || || || Sbjct 2991 TGAATCATCTTTCATAGTTAAAAGAAAACAACTCGAAAGTTGAGGTCTAGGTGTGCCAGC 2932 Query 38421 GTTAAATAATGTAGGAGATGCATGTATGAACCATTTTTCCGACAAATAATTATATGTTTC 38480 ||||| || || |||||||| || | || | ||||| |||| ||| || ||||| Sbjct 2931 ATTAAACAAAGTCGGAGATGCGTGAGTAAAGAACTTTTCTGACATCAGATTGTAAGTTTC 2872 Query 38481 TATTACATCATCTATATCACCGCCGTGAATACCTAGAGATACCCTCATTAGCATATGTTG 38540 || || | || |||||| | |||||||| || | | ||| | ||| ||||||||||| Sbjct 2871 AATAGCAGCTTCGATATCATCTCCGTGAATCCCAACCGCTACGCGCATAAGCATATGTTG 2812 Query 38541 TGGTCTTTCTATTATTTTATTATTCTGTT--TAAGTAGATACGATTTTTCTAATGTTTTT 38598 || | || | ||| | || || ||| ||||| ||| |||| | ||||| Sbjct 2811 GGGACGCTCGGCAACTTT-TCCACCTATTCGTAA-AAGATAAGATCTTTCAAGAGTTTTA 2754 Query 38599 ATTCCAAAATAACTATATGAATAATCTCTATCGTA 38633 | |||||||||| ||||| |||||||||||| || Sbjct 2753 AATCCAAAATAATTATATTTATAATCTCTATCATA 2719 Score = 123 bits (136), Expect = 2e-23 Identities = 233/338 (69%), Gaps = 6/338 (2%) Strand=Plus/Minus Query 37129 GGATTTACAACCTGAAAATCTCCAGATAATACTCTTCTTGTATATATATTGCTAGTATAT 37188 || || |||| ||||| || |||| | || | || | || || ||||| ||||| Sbjct 4442 GGGTTAACAATTTGAAATTCGCCAGCGAGAACACGTCGTTGGTAAATGTTGCTCGTATAA 4383 Query 37189 GGTTCAATGGACTCATTATTACTTAATATTTGAGATGTAGATGCAGTAGGCATTGGTGCT 37248 ||||||| | |||||| | |||||||| || ||||||||||||||||||||||| Sbjct 4382 GGTTCAAAACATTCATTAAAGCCCAATATTTGGGAAGTAGATGCAGTAGGCATTGGTGCG 4323 Query 37249 ATTAGAAGGCTATTTCTCAATCCATGTGTATTA-ATTCTCTTTTTTAGTTCATTCCAATC 37307 | | | ||||| | |||||| | | | ||| | | ||| | ||||||||| Sbjct 4322 AGCAATAATGAATTTCGTACACCATGT-TCTGATATTTTTTGTTTCAACAAATTCCAATC 4264 Query 37308 CCATAAATCTGTTGGGT--TCTTTAACCACATATCATATTGTAGAATACCTTTACTCGCT 37365 ||||||||| || || | | || ||||||||| ||||||| ||| ||||| | Sbjct 4263 CCATAAATCAGTAGGCTCAACATT--CCACATATCGTATTGTAAAATGCCTTTGGAAACC 4206 Query 37366 GGAGAATCGTTATATGTCTCATAAGGTCCGTAAATTTTAGCTAGTTCGCAACTAGATTCT 37425 || || | | ||| | |||||| || ||| | ||| | |||||| || | |||| Sbjct 4205 GGTGATCCTTGATACGACTCATACGGGCCGAATTTTTGTGATAGTTCACATGATGCTTCT 4146 Query 37426 AGTGCGGCATAATATATTGTTTCGAAAATTTGTATATT 37463 | ||| ||| ||| ||||| || || ||||| |||| Sbjct 4145 AATGCACCATGATACATTGTCTCAAATATTTGCTTATT 4108 Score = 98.7 bits (108), Expect = 9e-16 Identities = 136/188 (72%), Gaps = 2/188 (1%) Strand=Plus/Minus Query 37708 TTACATACAGCAACTTCATCTTCGTTACTAAATTGTATAATCTCTGTACAGAGATTACTC 37767 |||||||||||||||||||| | | | ||| | |||||||||||| | |||||| Sbjct 3715 TTACATACAGCAACTTCATCCGGGCTCGAATATTCAACAATCTCTGTACACAAATTACTA 3656 Query 37768 GATCTAATTGTTCCCAAATTGCTTTGATTGGATTTTTTATTACAAGAATCTTTATATAGT 37827 || | ||||| || | ||| |||||| ||||| ||||||||||||||| || || Sbjct 3655 CATTTGATTGTACCAAGATTTTGTTGATTAGATTTACGATTACAAGAATCTTTGTAGAGC 3596 Query 37828 ATATACGGCGTTCCTTGTTCTATTTGAGCCTCGATAATAGATTTCCATAAACTTCT-TGC 37886 ||||| || || || ||| || || | || | ||| | | |||| | |||| || Sbjct 3595 ATATATGGTGTACCCGTTTCGATCTGGGATTCAAGAATTGCTGTCCA-GACTTTCTGAGC 3537 Query 37887 TTTAACGA 37894 |||||||| Sbjct 3536 TTTAACGA 3529 >seq54 Length=215934 Score = 176 bits (194), Expect = 4e-39 Identities = 307/441 (70%), Gaps = 8/441 (2%) Strand=Plus/Minus Query 11339 TTTTGATATTCACTAACTCGTCGTTCGAAAAAATTAGTCTTACCTTCTAGTGATATATAC 11398 |||||||| || || ||| ||| || ||||| || ||||||| || || | Sbjct 102340 TTTTGATAATCTGATACGCGTTTTTCAAAGAAATTTGTTTTACCTTGTAAACTAATTAAA 102281 Query 11399 TCCATAAAGCTAAAAGGATTATATACATTGAAGACTTTTTCACAACCTAACTCTGTTAAT 11458 |||||||| ||||||||| | | ||| | | |||| | | ||| | | |||| Sbjct 102280 TCCATAAAATCAAAAGGATTCTCTGAATTATACAATTTTGCTCCACCAAGTGCCACTAAT 102221 Query 11459 AATCTATCTGCGACGAATTCTATATACTGAGACATTAAACAACAATTCATACCTATAAGA 11518 |||||||| || || ||||| ||||| | ||||||| |||||||| || | | Sbjct 102220 AATCTATCAGCTACAAATTCAATATATTTTTTCATTAAATTCGCGTTCATACCAATTAAA 102161 Query 11519 TCCACCGGAATAGCAACTGTCAAAAACTCCTTTTCTATATTAACCGCATCAATGATTATC 11578 | || || | || |||| ||||| || | |||||| ||||||| || || || Sbjct 102160 TTAACTGGTAATGCTTCTGTTAAAAATTCTTGTTCTATTGTAACCGCTTCCGCTATAATA 102101 Query 11579 GACGTTATA-ACTTCCTTAGATGGTGGATGT--AATAA-ATGTTTAAACATTAAACACGC 11634 | || || | || || | ||| || || | || ||| | || | | ||| || Sbjct 102100 GC--TTCTACAGTT--TTTGTTGGAGGTCGTGCACGAAGATGAGTGAATAAGAGACATGC 102045 Query 11635 AAAATCACAATGTAAACCTTCGTCTCTACTTATTAGTTCATTAGAAAATGTTAATCCGGG 11694 |||||||||||| || ||||| |||| | |||||||| || ||||| |||||||| || Sbjct 102044 AAAATCACAATGCAATCCTTCATCTCGAGAAATTAGTTCGTTGGAAAAAGTTAATCCTGG 101985 Query 11695 CATCAATCCTCGtttttttATCCAAAATATAGCAGCAAATGAACCAGAAAAGAATATTCC 11754 ||||| ||||| ||| |||| |||||| || | || || | ||||||||||||||||| Sbjct 101984 CATCATTCCTCTTTTCTTTAACCAAAAGATTGACGCGAAAGCTCCAGAAAAGAATATTCC 101925 Query 11755 CTCCACAGCTGCAAATGCTAC 11775 || ||||| ||||| ||||| Sbjct 101924 TTCAACAGCGGCAAACGCTAC 101904 Score = 129 bits (142), Expect = 5e-25 Identities = 189/264 (72%), Gaps = 5/264 (2%) Strand=Plus/Minus Query 11921 TACATTTCTGAATGAATATTTTCCATAGCTATTTGAAATCCATAGAAACATCGTGCCTCT 11980 |||||||||||||| |||||||| || || ||||||||||| ||||||| ||| ||| Sbjct 101676 TACATTTCTGAATGGATATTTTCGATCATGATCTGAAATCCATAAAAACATCTTGCTTCT 101617 Query 11981 GAACACTGTACATCCACATAAAATCTTTCCGCTAAATTCTCATTTACAATACCATCACTA 12040 | | || || || | ||| | |||| ||||||| ||||| ||||||||||| Sbjct 101616 GGAATTTGGACTTCATTACTAAAACGTTCCACTAAATTTTCATTGACAATACCATCCGAG 101557 Query 12041 GATGCAAAAAATGCTAGTATATGTTTTATAAAGTATTTTTCGTCTTTAGTTAA-TTTA-- 12097 | ||||| || || | | || |||||| ||||||| || | ||||| |||| Sbjct 101556 GCGGCAAAGAAGGCCAAAACGTGAGAAATAAAGAATTTTTCTTC-ATCGTTAAGTTTATA 101498 Query 12098 -TCCCAATCATCTAAATCTTTTGATAAATCTACTTCTTCAACGGTCCAAAAACTTGCCAC 12156 |||||||||| | ||| || || | || ||||| ||||| |||||||| || | Sbjct 101497 CTCCCAATCATTCATATCCTTGGAAAGGTCAACTTCCTCAACAGTCCAAAATGAAGCTTC 101438 Query 12157 TGATTGTTTATACATTTTCCAGAT 12180 | | ||| ||||||| |||||| Sbjct 101437 GGCCTTTTTGTACATTTGCCAGAT 101414 >seq370 Length=116867 Score = 100 bits (110), Expect = 3e-16 Identities = 135/188 (72%), Gaps = 0/188 (0%) Strand=Plus/Plus Query 38362 CTGTCATCCTTTATTGGTAGTATAAAACAACTAGACATTTGAGGCAATGGAGTTCCGGCG 38421 || ||||| || ||| | | || ||| || || |||||||| || ||| || || || Sbjct 20320 CTATCATCTTTCATTTGCACTAAAAAGCAGCTTGACATTTGTGGTCTTGGTGTACCAGCA 20379 Query 38422 TTAAATAATGTAGGAGATGCATGTATGAACCATTTTTCCGACAAATAATTATATGTTTCT 38481 ||||| || || ||| |||||| | || |||| || |||| ||||||| ||||| Sbjct 20380 TTAAACAAAGTTGGACTTGCATGAGTAAAATATTTCTCGGACATTAAATTATAAGTTTCA 20439 Query 38482 ATTACATCATCTATATCACCGCCGTGAATACCTAGAGATACCCTCATTAGCATATGTTGT 38541 || | |||| |||||| || ||||| || | ||| || | ||| | ||| |||||| Sbjct 20440 ATAGCTGCATCAATATCATAACCATGAATTCCAATAGAAACACGCATCAACATGTGTTGT 20499 Query 38542 GGTCTTTC 38549 |||||||| Sbjct 20500 GGTCTTTC 20507 Score = 93.3 bits (102), Expect = 4e-14 Identities = 197/290 (68%), Gaps = 8/290 (3%) Strand=Plus/Plus Query 37546 GGTCTATGTTTCTTATTAGATCTAGACGATTCTATCACTGGATAATAATTGATATCTATT 37605 ||||||||| |||| ||| | | | |||| || ||||||||||| ||| || Sbjct 19192 GGTCTATGTCTCTTGTTACTTTTTTCAGCTTCTGGAACGGGATAATAATTTTCATCAATG 19251 Query 37606 ATTTTATTTAGATTTTTAACTAGTATTTTCGTAATTATTCTCAA-CTTGTCGAACATAAA 37664 | |||||||| ||| || | | | ||| | |||| | | || ||| ||| ||| Sbjct 19252 ACTTTATTTAAATTCTTTATAACAACTTTAGCAATT-TCATGAAGCTTCAAGAAATCAAA 19310 Query 37665 ----TACGTTAT--TATTAACAAATTTACTCAACGAAATAGATCCTAGATTACATACAGC 37718 | || | | |||||||||||||| || ||||| || ||| |||||| || || Sbjct 19311 AGTTTTCGATTTGGTATTAACAAATTTAGGTAATGAAATTGAAGCTAAATTACAAACGGC 19370 Query 37719 AACTTCATCTTCGTTACTAAATTGTATAATCTCTGTACAGAGATTACTCGATCTAATTGT 37778 |||||||| | || ||| | ||| || ||||| | |||| || | || || Sbjct 19371 TACTTCATCGGGTGCAGTATATTCAACAATTTCAGTACATAAATTAGAGCATGTTATAGT 19430 Query 37779 TCCCAAATTGCTTTGATTGGATTTTTTATTACAAGAATCTTTATATAGTA 37828 || | ||| ||||||| ||||||| ||||||||||||| || ||| || Sbjct 19431 ACCAAGATTCTTTTGATTAGATTTTTCATTACAAGAATCTATAAATATTA 19480 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 468459229954240