Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhizophagus_20irregularis_20[genbank_20GCA_5F001593125.1_202016-03- 16] 11,196 sequences; 125,353,551 total letters Query= NC_003529.1 Length=155060 Score E Sequences producing significant alignments: (Bits) Value seq256 131 2e-25 seq218 118 1e-21 seq1465 104 2e-17 seq575 91.5 1e-13 seq1727 84.2 2e-11 >seq256 Length=68436 Score = 131 bits (144), Expect = 2e-25 Identities = 159/212 (75%), Gaps = 6/212 (3%) Strand=Plus/Plus Query 139556 ACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGA--GTCTT 139613 |||| |||| || ||||||||||||||||||||||| | | | | ||| ||||| Sbjct 66112 ACTAGATGAAGAGTTGACTCTTTTTGAATGTTATAATC--TGAAAGGGTACGACCGTCTT 66169 Query 139614 CGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGG 139673 | || ||||| ||||| | || ||||||||||| || || || || ||||||||||| Sbjct 66170 CAAGTTGTTTGCCAGCGAAAATAAGACGTTGCTGGTCTGGGGGAATTCCTTCTTTGTC-T 66228 Query 139674 TGATTTTTTGTTTTAGC-TGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTC 139732 ||| |||||| |||| | || || | ||||||| | || || |||| ||| | ||| Sbjct 66229 TGAATTTTTGCTTTAACTTGGTCAATAGTGTCGGAAGATTCAACTTCAAGGGTGATTGTC 66288 Query 139733 TTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 || ||||| | ||||| ||||| |||||||| Sbjct 66289 TTTCCGGTAAGGGTTTTAACGAAGATTTGCAT 66320 Score = 109 bits (120), Expect = 5e-19 Identities = 165/232 (71%), Gaps = 2/232 (1%) Strand=Plus/Plus Query 139535 TGGCCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCG 139594 || || || || | ||| | || | ||||| || || |||||||| ||||||||||| Sbjct 65407 TGACCACCACGGAGACGGAGGACGAGGTGAAGAGTTGATTCTTTTTGGATGTTATAATCC 65466 Query 139595 CTCATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGA 139654 | || | ||||| | || |||||||| | |||| |||||||||||| ||| Sbjct 65467 GAAAGAGTACGACCATCTTCCAATTGCTTACCAGCGAAAATCAAACGTTGCTGATCTGGA 65526 Query 139655 GGTATGCCTTCTTTGTCGGTGATTTTTTGTTTT-AGCTGTTCCACTGTGTCGGTGGGCTC 139713 || || || ||||| || ||| |||| ||||| | ||| || | || || | | || Sbjct 65527 GGGATACCCTCTTTATC-TTGAATTTTGGTTTTAACCTGATCAATGGTATCAGATGATTC 65585 Query 139714 CACCTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCATA 139765 ||||||| ||| | |||||| || || | |||||||| || ||||||||| Sbjct 65586 GACCTCAAGGGTAATCGTCTTACCAGTAAGTGTTTTTACAAAAATTTGCATA 65637 Score = 100 bits (110), Expect = 3e-16 Identities = 165/233 (71%), Gaps = 4/233 (2%) Strand=Plus/Plus Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTC 139597 ||||| || | ||| | ||| | |||| || || ||||||||||| || || ||| Sbjct 65866 CCGCCACGAAGACGGAGAACGAGATGAAGAGTGGATTCTTTTTGAATATTGTAGTCGGAA 65925 Query 139598 ATTGTGC-TCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGG 139656 | || | || | || || || ||||||||||| | || ||||||||||| || || || Sbjct 65926 AGGGTTCGTCCA-TCCTCAAGTTGTTTACCAGCGAAAATGAGACGTTGCTGGTCTGGGGG 65984 Query 139657 TATGCCTTCTTTGTCGGTGATTTTTTG-TTTTAGCTGTTCCACTGTGTCGGTGGGCTCCA 139715 || || || || || ||| |||| | ||||| || || | || || | || ||| | Sbjct 65985 GATACCCTCCTTATC-TTGAATTTTGGTTTTTACTTGGTCGATGGTATCCGAGGACTCTA 66043 Query 139716 CCTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCATAGCT 139768 | || | ||| | || |||||||| | || |||||||| ||||||||| || Sbjct 66044 CGTCCAAGGTGATGGTTTTGCCGGTGAGTGTCTTTACGAAGATTTGCATACCT 66096 Score = 89.7 bits (98), Expect = 5e-13 Identities = 161/230 (70%), Gaps = 4/230 (2%) Strand=Plus/Plus Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTC 139597 || || || | ||| | || || |||| || |||||||||||||| || || || Sbjct 65638 CCACCACGAAGACGAAGCACCAAATGAAGTGTTGACTCTTTTTGAATATTGTAGTCAGAA 65697 Query 139598 ATTGTGC-TCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGG 139656 | || | || | || || || |||||||| || | || |||||||||||||| || || Sbjct 65698 AGGGTTCGTCCA-TCCTCAAGTTGTTTACCGGCGAAAATGAGACGTTGCTGATCTGGGGG 65756 Query 139657 TATGCCTTCTTTGTCGGTGATTTTTTG-TTTTAGCTGTTCCACTGTGTCGGTGGGCTCCA 139715 || ||||||||||| ||| | |||| ||||| || || | || |||| | ||| | Sbjct 65757 AATACCTTCTTTGTC-TTGAATCTTTGCTTTTACTTGATCGATGGTATCGGAAGACTCAA 65815 Query 139716 CCTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCATA 139765 | || | || | || || || || | ||||| || || ||||||||| Sbjct 65816 CTTCCAAAGTAATGGTTTTTCCAGTTAGAGTTTTAACAAAAATTTGCATA 65865 >seq218 Length=131350 Score = 118 bits (130), Expect = 1e-21 Identities = 165/229 (72%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTC 139597 || |||| |||||| | || | || | || || ||||||||||||||||| || | Sbjct 42015 CCACCTCTTAAACGGAGTACGAGATGGAGAGTGGATTCTTTTTGAATGTTATAGTCTGAC 42074 Query 139598 ATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 139657 | ||| | ||||| | ||||||||||| |||||| ||||| ||||| || || Sbjct 42075 AATGTACGACCATCTTCTAATTGTTTACCAGCGAAGATCAAGCGTTGTTGATCTGGGGGG 42134 Query 139658 ATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGC-TGTTCCACTGTGTCGGTGGGCTCCAC 139716 || |||||||| || ||| | |||| |||| | || || | || || | || ||| || Sbjct 42135 ATACCTTCTTTATC-TTGAATCTTTGCTTTAACTTGGTCTATGGTATCAGAGGACTCTAC 42193 Query 139717 CTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCATA 139765 |||| || | || || ||||||| |||||| ||||| ||||||||| Sbjct 42194 TTCAAGAGTGATTGTTTTACCGGTCAGCGTTTTAACGAAAATTTGCATA 42242 Score = 104 bits (114), Expect = 2e-17 Identities = 144/199 (72%), Gaps = 2/199 (1%) Strand=Plus/Plus Query 139568 GTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTCTTCGAGCTGTTTACCA 139627 ||||| ||||||||||| |||||||| | || | ||||| | ||||||||| Sbjct 41361 GTAGATTCTTTTTGAATATTATAATCCGATAAAGTACGGCCATCTTCCAATTGTTTACCA 41420 Query 139628 GCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTGATTTTTTGTTTT 139687 || |||||| ||||||||||| ||||| || ||||| || || ||| | |||| ||| Sbjct 41421 GCGAAGATCAAGCGTTGCTGATCTGGAGGAATACCTTCCTTATC-TTGAATCTTTGCTTT 41479 Query 139688 AGC-TGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTGCCGGTCAACGT 139746 | | || || | || || | || ||| || |||| ||| | || || ||||| | || Sbjct 41480 AACTTGGTCTATGGTATCAGAGGACTCAACTTCAAGGGTAATTGTTTTACCGGTGAGGGT 41539 Query 139747 TTTTACGAATATTTGCATA 139765 || ||||| ||||||||| Sbjct 41540 CTTGACGAAAATTTGCATA 41558 Score = 104 bits (114), Expect = 2e-17 Identities = 162/229 (71%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTC 139597 || |||| |||||| | || | || | || || ||||||||||| |||||||| | Sbjct 42243 CCACCTCTTAAACGGAGTACGAGATGGAGAGTTGATTCTTTTTGAATATTATAATCTGAC 42302 Query 139598 ATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 139657 | || | | ||||| | ||||||||||| |||| | ||||| ||||| ||||| Sbjct 42303 AAAGTACGCCCATCTTCCAATTGTTTACCAGCGAAGATTAAGCGTTGTTGATCTGGAGGA 42362 Query 139658 ATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGC-TGTTCCACTGTGTCGGTGGGCTCCAC 139716 || ||||| || || ||| | |||| |||| | || || | || || ||| ||| || Sbjct 42363 ATTCCTTCCTTATC-TTGAATCTTTGCTTTAACTTGATCAATAGTATCATTGGACTCGAC 42421 Query 139717 CTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCATA 139765 |||| ||| | || || || || | || || ||||||||||||||| Sbjct 42422 TTCAAGGGTAATGGTTTTCCCAGTAAGGGTCTTGACGAATATTTGCATA 42470 Score = 100 bits (110), Expect = 3e-16 Identities = 161/229 (70%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTC 139597 || |||| |||||| | || | || | || || ||||||||||| |||||||| | Sbjct 41787 CCACCTCTTAAACGGAGTACGAGATGGAGAGTTGATTCTTTTTGAATATTATAATCTGAC 41846 Query 139598 ATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 139657 | || | ||||| | ||||||||||| |||||| ||||| ||||| ||||| Sbjct 41847 AACGTACGACCATCTTCTAATTGTTTACCAGCGAAGATCAAGCGTTGTTGATCTGGAGGG 41906 Query 139658 ATGCCTTCTTTGTCGGTGATTTTTTG-TTTTAGCTGTTCCACTGTGTCGGTGGGCTCCAC 139716 || |||||||| || ||| | || | ||||| || || | || || | || ||| || Sbjct 41907 ATACCTTCTTTATC-TTGAATCTTCGTTTTTACTTGATCTATGGTATCAGAGGACTCGAC 41965 Query 139717 CTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCATA 139765 |||| || | || || ||||| | || || ||||| ||||||||| Sbjct 41966 TTCAAGAGTAATTGTTTTACCGGTGAGGGTCTTGACGAAAATTTGCATA 42014 >seq1465 Length=43607 Score = 104 bits (114), Expect = 2e-17 Identities = 164/230 (71%), Gaps = 4/230 (2%) Strand=Plus/Plus Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTC 139597 || |||| |||||| | || | || | || ||||| ||||| || || ||||| | Sbjct 26786 CCACCTCTTAAACGGAGCACGAGATGGAGAGTTGACTCCTTTTGGATATTGTAATCTGAC 26845 Query 139598 ATTGTGC-TCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGG 139656 | || | || | ||||| | |||||||| ||| |||||| ||||||||||| || || Sbjct 26846 AAGGTACGTCCA-TCTTCCAATTGTTTACCGGCAAAGATCAAGCGTTGCTGATCCGGGGG 26904 Query 139657 TATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGC-TGTTCCACTGTGTCGGTGGGCTCCA 139715 |||||||||||||| ||| | || | |||| | || || | || || | || ||| | Sbjct 26905 AATGCCTTCTTTGTC-TTGAATCTTCGCTTTAACTTGGTCAATGGTATCTGAGGACTCTA 26963 Query 139716 CCTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCATA 139765 | |||| || | || || ||||| | || || ||||| ||||||||| Sbjct 26964 CTTCAAGAGTAATAGTTTTACCGGTAAGAGTCTTAACGAAAATTTGCATA 27013 Score = 87.8 bits (96), Expect = 2e-12 Identities = 97/127 (76%), Gaps = 2/127 (2%) Strand=Plus/Plus Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTC 139597 || |||| | ||| | ||| | ||||| || ||||||||||| || ||||| ||| | Sbjct 27014 CCACCTCTAAGACGGAGAACAAGGTGAAGAGTTGACTCTTTTTGGATATTATAGTCGGAC 27073 Query 139598 ATTGTGC-TCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGG 139656 | || | || | ||||| |||||||||||||| |||||| ||||||||||| ||||| Sbjct 27074 AAAGTACGTCCA-TCTTCCAGCTGTTTACCAGCGAAGATCAAGCGTTGCTGATCTGGAGG 27132 Query 139657 TATGCCT 139663 || ||| Sbjct 27133 AATACCT 27139 >seq575 Length=50698 Score = 91.5 bits (100), Expect = 1e-13 Identities = 159/229 (69%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 139537 GCCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCT 139596 ||| || |||||||| | || ||||| | || || ||||||||||| || |||||| Sbjct 22909 GCCACCGCGTAAACGAAGTACCAAGTGTAATGTTGATTCTTTTTGAATATTGTAATCGGA 22968 Query 139597 CATTGTGC-TCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAG 139655 | || | || | ||||| | ||||||||||||| | || | |||||| ||||| || | Sbjct 22969 AAGTGAACGTCCA-TCTTCTAACTGTTTACCAGCAAATATTAAACGTTGTTGATCCGGGG 23027 Query 139656 GTATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCA 139715 | || |||||||| || ||||||| ||| | | || | || ||| | || | Sbjct 23028 GGATTCCTTCTTTATCTTGAATTTTTTCTTTGACTTTATCGATGGTATCGCTACTTTCAA 23087 Query 139716 CCTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 | || | || | || || || || | ||||| || || |||||||| Sbjct 23088 CTTCTAAAGTAATGGTTTTACCAGTAAGTGTTTTAACAAAAATTTGCAT 23136 >seq1727 Length=26445 Score = 84.2 bits (92), Expect = 2e-11 Identities = 112/156 (72%), Gaps = 0/156 (0%) Strand=Plus/Minus Query 139610 TCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTG 139669 ||||| || |||||||||||| |||||| ||||||||||| ||||| |||||||||| Sbjct 20311 TCTTCCAGTTGTTTACCAGCAAAGATCAAACGTTGCTGATTTGGAGGAGTGCCTTCTTTA 20252 Query 139670 TCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACC 139729 || ||| | | ||| | | || ||||| || | || || || |||| || | Sbjct 20251 TCTTGAATTATGTTTTTCACTTCTTTAACTGTATCAGAGGCATCAACTTCAATGGCAATT 20192 Query 139730 GTCTTGCCGGTCAACGTTTTTACGAATATTTGCATA 139765 || ||||| | | ||||| || || ||||| ||| Sbjct 20191 GTTTTGCCACTTACAGTTTTAACAAAAATTTGTATA 20156 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 495994575843200