Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhizophagus_20irregularis_20[genbank_20GCA_5F001593125.1_202016-03- 16] 11,196 sequences; 125,353,551 total letters Query= NC_003663.2 Length=224499 Score E Sequences producing significant alignments: (Bits) Value seq1647 347 2e-90 seq54 199 6e-46 seq370 111 2e-19 >seq1647 Length=14880 Score = 347 bits (384), Expect = 2e-90 Identities = 673/988 (68%), Gaps = 14/988 (1%) Strand=Plus/Minus Query 79860 TTCGAACTCGTCTCCCCAAACATCGTCTAATCCAGGACATTCGTCAGGACACATCAACGA 79919 ||| || || || ||||||||||| ||| |||||| ||| | ||| |||| | Sbjct 3414 TTCAAATTCATCACCCCAAACATCCATTAAACCAGGAGCTTCAGCCGGA----TCAAATA 3359 Query 79920 CCACTCTCCATCATCCTTT------ACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGC 79973 |||| | || ||| ||| || | ||||||||| ||||| | || |||||| || Sbjct 3358 A-ACTC-CAATTATCATTTGATTCAACCCTTTTCATAAAAAGATCCGAAACCCAAAGTGC 3301 Query 79974 TATAAATAGATCTCTGGTTCTATGCTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAA 80033 ||||| ||| | | | | || || ||||| ||||| ||||| | ||| | || Sbjct 3300 ATAAAATAAATCCCGTGCACGAACTTCTTCTTTTCCAGTATTTTTTTTTAAATCCATAAA 3241 Query 80034 CGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCCGGTCGTTTGTT 80093 | | ||| |||| |||||||| ||| || || || || | | ||||| |||||||| Sbjct 3240 ATCAAAAATGTCAGGATGCCACGTTTCTAAATAAATAGCAAACGCGCCCGGACGTTTGTT 3181 Query 80094 TCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACC 80153 |||||| ||||| | |||||||| || ||||||||||| | ||||| |||||||| || Sbjct 3180 TCCTCCTTGATCAACATATCTAGCAGTATTATTATAAACGCGTAACATGGGAATAATTCC 3121 Query 80154 ATTGGATGTACCATTGGTCCCGGAGATATAGCTTCCACTGGCACGAATATTACTAATTGA 80213 ||| || |||||| || || | ||||| ||| | |||||||| ||| ||| Sbjct 3120 ATTTGAATAACCATTTGTTCCAGCAATATAAGATCCTGTCGCACGAATGTTATGAATGTT 3061 Query 80214 TAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGAT 80273 | ||| || || ||||| | ||||| || | ||||||| ||| || ||||||||||| Sbjct 3060 CACACCAATACCACCTGCAGTCTTAGAAATCATTGCGCATGTTTTCAAAGTATCATAGAT 3001 Query 80274 GCCCTCTATGCTATCATCAATCAT-GTTAAGTAGAAAACAGCTAGACATTTGGTGACGAC 80332 |||||||| |||||| |||| ||||| |||||||| || || | ||| | | | Sbjct 3000 TCCCTCTATTGAATCATCTTTCATAGTTAA-AAGAAAACAACTCGAAAGTTGAGGTCTAG 2942 Query 80333 TAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGACAGTAGAT 80392 || || |||||||| || || ||||| ||||| ||||| | ||||| |||| |||| Sbjct 2941 GTGTGCCAGCATTAAACAAAGTCGGAGATGCGTGAGTAAAGAACTTTTCTGACATCAGAT 2882 Query 80393 TGTACGTCTCAATAGCTGATTCTATATCCCATTGATGAATTCCTACCGCGACACGCATTA 80452 |||| || |||||||| | ||| ||||| | ||||| || ||||| || ||||| | Sbjct 2881 TGTAAGTTTCAATAGCAGCTTCGATATCATCTCCGTGAATCCCAACCGCTACGCGCATAA 2822 Query 80453 ACATGTGCTGAGGTCTTTCAACGATCTTGTTATTTATTTTCAACAAGTAAGATTTTTCCA 80512 ||| || || || | || | | || | |||| || | |||||| |||| | Sbjct 2821 GCATATGTTGGGGACGCTCGGCAACTTTTCCACCTATTCGTAAAAGATAAGATCTTTCAA 2762 Query 80513 AAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAATAACCGAGTTGA 80572 ||||||||| |||||||| || ||| | | |||| || ||||| || || || | Sbjct 2761 GAGTTTTAAATCCAAAATAATTATATTTATAATCTCTATCATAAATGATCGTAGAATTAA 2702 Query 80573 GTTTATCCTTATATTTGTTAACTACATCCATGGTGATACTTGAAATAATCGGAGAATGTT 80632 |||| ||| || || | || | || || | ||||| || | | ||| Sbjct 2701 GTTTTTCCGAATTGTTCATCACAATATTATAAGTTTTTTCAGAAATCATTGACGCGCGTT 2642 Query 80633 TCCCATTTTTAGGATTAACATAGTTGAATAAATCCTCCATCACTTCACTAAATAGttttt 80692 |||| |||| ||||| | ||| || | | ||| || | || | ||| | ||||| Sbjct 2641 TCCCTGTTTTCGGATTTATATAATTATAAAGATCTTCAACAACATTGGAAAAAACTTTTT 2582 Query 80693 ttGTTTCCTTGTGTAGATTTGATACGGCTATTCTGGCGGCTAAAATGGCATAATCTGGAT 80752 | ||||| || || ||||| || || || || | || || | | |||||| || |||| Sbjct 2581 TAGTTTCTTTATGAAGATTAGAAACAGCAATACGAGCAGCAAGGACGGCATAGTCCGGAT 2522 Query 80753 GTTGTGTAGTACAAGTGGCTGCTATTTCGGCTGCCAGAGTGTCCAATTCTACCGTTGTTA 80812 ||| || || | || || |||| || |||| | | || ||||| || || | | Sbjct 2521 GTTTAGTCGTCATATACGCGGCCGTTTCTGCAGCCAAATTATCTAATTCAACAGTGCTAA 2462 Query 80813 CTCCATTATATATTCCTTGGATAACCTT 80840 | || | ||| | |||| || ||||| Sbjct 2461 CACCTTGATAAACTCCTGAAATGACCTT 2434 Score = 86.0 bits (94), Expect = 9e-12 Identities = 139/200 (70%), Gaps = 0/200 (0%) Strand=Plus/Minus Query 79600 ACAAACATGTTCAACGCGACAGATGCCAGATTACAAACGGCTACCTCATTAGCATCCGCA 79659 ||||||||| ||| || | | |||| ||||| || || || |||| | || | Sbjct 3745 ACAAACATGGGCAATGCTATACTAGCCAAGTTACATACAGCAACTTCATCCGGGCTCGAA 3686 Query 79660 TATTGTATTATTTCAGTGCAGAGGTTACTACACTTAATGGTTCCTAAATTTTGTTGATTA 79719 |||| | || || || || | |||||||| || || || || | ||||||||||||| Sbjct 3685 TATTCAACAATCTCTGTACACAAATTACTACATTTGATTGTACCAAGATTTTGTTGATTA 3626 Query 79720 CTCTTTTTGTTACACGCATCCTTATAAAGAATGAACGGAGTACCAGTTTCAATCTGAGAT 79779 || ||||| | ||| || || || || | || ||||| ||||| ||||| ||| Sbjct 3625 GATTTACGATTACAAGAATCTTTGTAGAGCATATATGGTGTACCCGTTTCGATCTGGGAT 3566 Query 79780 TCTATAATCGCTTTCCAGAC 79799 || | ||| ||| ||||||| Sbjct 3565 TCAAGAATTGCTGTCCAGAC 3546 >seq54 Length=215934 Score = 199 bits (220), Expect = 6e-46 Identities = 325/458 (71%), Gaps = 10/458 (2%) Strand=Plus/Minus Query 49656 CATAACTCCCATTTTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTTCCTTC 49715 ||||||||| |||||| || || || |||||||| || ||||| ||||| |||| Sbjct 102353 CATAACTCCAGCTTTTTGATAATCTGATACGCGTTTTTCAAAGAAATTTGTTTTACCTTG 102294 Query 49716 CAATGATATATTTTCCATGAAATCAAACGGATTGGTAACATTATA-AAtttttttAAATC 49774 || || ||||| |||||||| ||||| |||||| |||||| | | Sbjct 102293 TAAACTAATTAAATCCATAAAATCAAAAGGATTCTCTGAATTATACAATTTTGCTCCA-- 102236 Query 49775 CCAATT--CAGAAATCAATCTATCCGCGACAAATTCTATATATGTTTTCATCAT-TTCAC 49831 |||| | || ||| |||||||| || |||||||| |||||| ||||||| | ||| | Sbjct 102235 CCAAGTGCCACTAAT-AATCTATCAGCTACAAATTCAATATATTTTTTCATTAAATTCGC 102177 Query 49832 AATTCATTCCTATAAGTTTAACTGGAAGAGCCGCAGTAAGAAATTCTTGTTCAATGGATA 49891 ||||| || || | |||||||| | || | || | |||||||||||| || | | Sbjct 102176 G-TTCATACCAATTAAATTAACTGGTAATGCTTCTGTTAAAAATTCTTGTTCTATTGTAA 102118 Query 49892 CCGCATCTGTTATAATAGATCTAACGGTTTCTTCACTCGGTGGATGCAATAA-ATGTTTA 49950 |||| || | |||||||| | || |||| | ||| | |||| || ||| | Sbjct 102117 CCGCTTCCGCTATAATAGCTTCTACAGTTTTTGTTGGAGGTCG-TGCACGAAGATGAGTG 102059 Query 49951 AACATCAAACATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAA 50010 || | | |||||| ||||| || |||| || || |||| | |||||||||||||||| Sbjct 102058 AATAAGAGACATGCAAAATCACAATGCAATCCTTCATCTCGAGAAATTAGTTCGTTGGAA 101999 Query 50011 AACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGACCCA 50070 || || | ||| ||||| | || | || || | |||||| || ||||| || | ||| Sbjct 101998 AAAGTTAATCCTGGCATCATTCCTCTTTTCTTTAACCAAAAGATTGACGCGAAAGCTCCA 101939 Query 50071 GAAAAGAAGATTCCTTCTACTGCGGCAAAGGCAACAAG 50108 |||||||| |||||||| || |||||||| || ||||| Sbjct 101938 GAAAAGAATATTCCTTCAACAGCGGCAAACGCTACAAG 101901 Score = 178 bits (196), Expect = 2e-39 Identities = 228/310 (74%), Gaps = 6/310 (2%) Strand=Plus/Minus Query 50221 TCTTTAACATAAGTATCGATCAAAAGACTATACATTTCCGAATGAATGTTTTCAATGGCC 50280 || || | ||||| ||| ||||| || |||||||| ||||| || ||||| || Sbjct 101706 TCCTTGATATAAGAATCAATCAAGAGGGAGTACATTTCTGAATGGATATTTTCGATCATG 101647 Query 50281 ATCTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGCACTTCTGTACAAAATCGTTCA 50340 ||||||||||| || |||||||| || || | ||| || ||||| ||| ||| ||||| Sbjct 101646 ATCTGAAATCCATAAAAACATCTTGCTTCTGGAATTTGGACTTCATTACTAAAACGTTCC 101587 Query 50341 GCTAAATTTTCATTCACTATTCCGTCACTGGCTGCAAAAAACGCCAATACATGTTTTATA 50400 ||||||||||||| || || || || ||| ||||| || ||||| || || ||| Sbjct 101586 ACTAAATTTTCATTGACAATACCATCCGAGGCGGCAAAGAAGGCCAAAACGTGAGAAATA 101527 Query 50401 AAATGTTTTTCGTTGGGTGTT-AGTTTA---TTCCAATCATTGATATCTTTAGATATATC 50456 || |||||| || ||| |||||| | ||||||||| ||||| || || | || Sbjct 101526 AAGAATTTTTC-TTCATCGTTAAGTTTATACTCCCAATCATTCATATCCTTGGAAAGGTC 101468 Query 50457 TACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACATATTCCAGATGT-CAT 50515 ||||| || || ||||||||||| || || |||||||| ||||| | |||||| | || Sbjct 101467 AACTTCCTCAACAGTCCAAAATGAAGCTTCGGCCTTTTTGTACATTTGCCAGATCTACAC 101408 Query 50516 GATATTGGAT 50525 ||||| ||| Sbjct 101407 AATATTTGAT 101398 >seq370 Length=116867 Score = 111 bits (122), Expect = 2e-19 Identities = 139/191 (73%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 80284 CTATCATCAATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGACGACTAGTTCCCGCA 80343 |||||||| |||| | | || ||| ||||| |||||||| | | || || ||| Sbjct 20320 CTATCATCTTTCATTTGCACTAAAAAGCAGCTTGACATTTGTGGTCTTGGTGTACCAGCA 20379 Query 80344 TTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGACAGTAGATTGTACGTCTCA 80403 ||||| || || ||| || || ||||| |||| || |||| || ||| || || ||| Sbjct 20380 TTAAACAAAGTTGGACTTGCATGAGTAAAATATTTCTCGGACATTAAATTATAAGTTTCA 20439 Query 80404 ATAGCTGATTCTATATCCCATTGATGAATTCCTACCGCGACACGCATTAACATGTGCTGA 80463 ||||||| || ||||| | ||||||||| | | |||||||| |||||||| || Sbjct 20440 ATAGCTGCATCAATATCATAACCATGAATTCCAATAGAAACACGCATCAACATGTGTTGT 20499 Query 80464 GGTCTTTCAAC 80474 ||||||||||| Sbjct 20500 GGTCTTTCAAC 20510 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 718168278281440