Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhizophagus_20irregularis_20[genbank_20GCA_5F001593125.1_202016-03- 16] 11,196 sequences; 125,353,551 total letters Query= NC_004002.1 Length=149955 Score E Sequences producing significant alignments: (Bits) Value seq54 253 2e-62 >seq54 Length=215934 Score = 253 bits (280), Expect = 2e-62 Identities = 373/527 (71%), Gaps = 6/527 (1%) Strand=Plus/Minus Query 13558 CTTTGTTAGAAATAACGCCCATTTTTTGATATTCACTAACTCTTTTTTCAAAGAAGTTAG 13617 || ||||| ||||| || ||||||||| || || | |||||||||||| || | Sbjct 102363 CTCTGTTACTCATAACTCCAGCTTTTTGATAATCTGATACGCGTTTTTCAAAGAAATTTG 102304 Query 13618 TTTTACCTTCCAGTGATATATTT---TCCATAAAATCAAATGGATTTATTGACATAAACA 13674 ||||||||| || | || || |||||||||||||| ||||| ||| || ||| Sbjct 102303 TTTTACCTT---GTAAACTAATTAAATCCATAAAATCAAAAGGATTCTCTGAATTATACA 102247 Query 13675 CTTTATCACAACCTAGTTCTAATAGTAATCTATCAGCAATAAACTCAATATATTGAGACA 13734 ||| | | ||| ||| | | || |||||||||||| | ||| |||||||||| || Sbjct 102246 ATTTTGCTCCACCAAGTGCCACTAATAATCTATCAGCTACAAATTCAATATATTTTTTCA 102187 Query 13735 TTAAATCACAATTCATACCTATTAGTTTTACAGGAATTATATTGGTTAAAAATTCTTTTT 13794 |||||| |||||||| |||| || || || | | | ||||||||||||| || Sbjct 102186 TTAAATTCGCGTTCATACCAATTAAATTAACTGGTAATGCTTCTGTTAAAAATTCTTGTT 102127 Query 13795 CTATAGACACAGCCTCTTTTATAATAATTGTAATAATCTCATTAGAAGGAGGATATTTTA 13854 |||| | || || || ||||||| | | | | | | | ||| | | Sbjct 102126 CTATTGTAACCGCTTCCGCTATAATAGCTTCTACAGTTTTTGTTGGAGGTCGTGCACGAA 102067 Query 13855 GATGTTTAAAAATTAAACACGCAAAATCACAATGAAGGCCCTCATCTCTACTAATAAGTT 13914 |||| | || | | ||| |||||||||||||| | || ||||||| | ||| |||| Sbjct 102066 GATGAGTGAATAAGAGACATGCAAAATCACAATGCAATCCTTCATCTCGAGAAATTAGTT 102007 Query 13915 CGTTTGAAAATGTTAATCCTGGCATCAATCCTCGtttttttAACCAAAATATTGCAGCAA 13974 |||| ||||| |||||||||||||||| ||||| ||| ||||||||||| |||| || | Sbjct 102006 CGTTGGAAAAAGTTAATCCTGGCATCATTCCTCTTTTCTTTAACCAAAAGATTGACGCGA 101947 Query 13975 ATGACCCGGAAAAGAATATTCCCTCAACTGCAGCAAACGCTATTAATCGTTCTCCAAACG 14034 | | || |||||||||||||| ||||| || |||||||||| | ||||| |||| | Sbjct 101946 AAGCTCCAGAAAAGAATATTCCTTCAACAGCGGCAAACGCTACAAGACGTTCAGCAAATG 101887 Query 14035 ATGCTTTTTTGTTCGATATCCATTTTCTAGCCCATTCAGAttttttt 14081 | | || || | || |||||| |||||| || | ||||||| Sbjct 101886 AAGATTCCTTATCGGAAATCCATCGAAGAGCCCAATCCGCTTTTTTT 101840 Score = 138 bits (152), Expect = 1e-27 Identities = 191/264 (72%), Gaps = 5/264 (2%) Strand=Plus/Minus Query 14166 TACATTTCAGAGTGTATGTTTTCCATAGCTATCTGAAAACCATAAAAGCATCTAGCTTCC 14225 |||||||| || || || ||||| || |||||||| |||||||| ||||| ||||| Sbjct 101676 TACATTTCTGAATGGATATTTTCGATCATGATCTGAAATCCATAAAAACATCTTGCTTCT 101617 Query 14226 GACCATTGTACTTCCG-AGTAAAATCTTTCGGCCAAATTTTCATTAACTATACCATCACT 14284 | ||| ||||| | ||||| | ||| | ||||||||||| || |||||||| Sbjct 101616 GGAATTTGGACTTCATTACTAAAA-CGTTCCACTAAATTTTCATTGACAATACCATCCGA 101558 Query 14285 AGCTGCAAAAAATGCCAATATGTTTTTAATAAAGTATTGCTCTTCATTGTTGAGTTT--- 14341 || ||||| || ||||| | || ||||||| ||| ||||||| ||| ||||| Sbjct 101557 GGCGGCAAAGAAGGCCAAAACGTGAGAAATAAAGAATTTTTCTTCATCGTTAAGTTTATA 101498 Query 14342 TTTCCAATCGGATAAATCCTTAGAAAGATCTACTTCATCAACTGTCCAAAAACTAGCGAC 14401 | |||||| | |||||| ||||| || ||||| ||||| |||||||| ||| | Sbjct 101497 CTCCCAATCATTCATATCCTTGGAAAGGTCAACTTCCTCAACAGTCCAAAATGAAGCTTC 101438 Query 14402 AGCTTTTTTATACATTACCCATAT 14425 || ||||| |||||| ||| || Sbjct 101437 GGCCTTTTTGTACATTTGCCAGAT 101414 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 479660862066400