Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhizophagus_20irregularis_20[genbank_20GCA_5F001593125.1_202016-03- 16] 11,196 sequences; 125,353,551 total letters Query= NC_004062.1 Length=119217 Score E Sequences producing significant alignments: (Bits) Value seq1465 131 1e-25 seq256 104 2e-17 seq575 102 6e-17 seq645 100 2e-16 seq218 93.3 3e-14 >seq1465 Length=43607 Score = 131 bits (144), Expect = 1e-25 Identities = 155/210 (74%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 42900 CACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGACAATGTACGTTCGTCGTC 42959 ||| | ||||| ||| ||||||||| | ||||||||| ||||| |||||| | || || Sbjct 26803 CACGAGATGGAGAGTTGACTCCTTTTGGATATTGTAATCTGACAAGGTACGTCCATCTTC 26862 Query 42960 CAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGCACACCTTCTTTTTCGCT 43019 ||||||||| |||||||| ||||| || || ||||| | || | |||||||| || Sbjct 26863 CAATTGTTTACCGGCAAAGATCAAGCGTTGCTGATCCGGGGGAATGCCTTCTTTGTCTTG 26922 Query 43020 GATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGCCTCGACGTCTACCGTTATAGTTTT 43079 ||| | |||| ||| | ||| || || | ||| || || | || |||||||| Sbjct 26923 AATCTTCGCTTTAACTTGGTCAATGGTATCTGAGGACTCTACTTCAAGAGTAATAGTTTT 26982 Query 43080 TCCGGTTAGAGTTTTCACAAAAATTTGCAT 43109 ||||| ||||| || || ||||||||||| Sbjct 26983 ACCGGTAAGAGTCTTAACGAAAATTTGCAT 27012 >seq256 Length=68436 Score = 104 bits (114), Expect = 2e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 42883 CCTCCACGCAGTCTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGAC 42942 || ||||| || | | ||||||||| | || ||| ||||| | |||||| || || Sbjct 65638 CCACCACGAAGACGAAGCACCAAATGAAGTGTTGACTCTTTTTGAATATTGTAGTCAGAA 65697 Query 42943 AATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGC 43002 | || ||| | || || | |||||| ||||| ||||| | || || ||||| | || Sbjct 65698 AGGGTTCGTCCATCCTCAAGTTGTTTACCGGCGAAAATGAGACGTTGCTGATCTGGGGGA 65757 Query 43003 ACACCTTCTTTTTCGCTGATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGCCTCGACG 43062 | ||||||||| || ||| |||| ||| | | || ||| || ||| || Sbjct 65758 ATACCTTCTTTGTCTTGAATCTTTGCTTTTACTTGATCGATGGTATCGGAAGACTCAACT 65817 Query 43063 TCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACAAAAATTTGCAT 43109 || | || || |||||||| ||||||||||| |||||||||||||| Sbjct 65818 TCCAAAGTAATGGTTTTTCCAGTTAGAGTTTTAACAAAAATTTGCAT 65864 >seq575 Length=50698 Score = 102 bits (112), Expect = 6e-17 Identities = 139/194 (72%), Gaps = 0/194 (0%) Strand=Plus/Plus Query 42919 TCCTTTTGCACATTGTAATCGGACAATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAA 42978 || ||||| | |||||||||||| | || |||| | || || || ||||| || ||||| Sbjct 22946 TCTTTTTGAATATTGTAATCGGAAAGTGAACGTCCATCTTCTAACTGTTTACCAGCAAAT 23005 Query 42979 ATCAATCGCTGTTGATCGGCCGGCACACCTTCTTTTTCGCTGATCAACTCTTTGACTCTG 43038 || || || |||||||| | || | |||||||| || || ||||||||| | Sbjct 23006 ATTAAACGTTGTTGATCCGGGGGGATTCCTTCTTTATCTTGAATTTTTTCTTTGACTTTA 23065 Query 43039 CCAACTGTGTCGCCAGCCTCGACGTCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACA 43098 | | || |||| | || || |||| || || ||||| || || || ||||| ||| Sbjct 23066 TCGATGGTATCGCTACTTTCAACTTCTAAAGTAATGGTTTTACCAGTAAGTGTTTTAACA 23125 Query 43099 AAAATTTGCATTTT 43112 ||||||||||| || Sbjct 23126 AAAATTTGCATGTT 23139 >seq645 Length=46104 Score = 100 bits (110), Expect = 2e-16 Identities = 157/223 (70%), Gaps = 10/223 (4%) Strand=Plus/Plus Query 42883 CCTCCACGCAGTCTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGAC 42942 |||||||| ||||| | || | ||| || |||| ||| ||||| | || ||||| ||| Sbjct 29517 CCTCCACGTAGTCTAAGTACAAGATGAATTGTGCACTCTTTTTGGATATAATAATCTGAC 29576 Query 42943 AATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGC 43002 || |||||| | || || ||||| |||| |||||||| | || |||||||| | || Sbjct 29577 AAGGTACGTCCTTCTTCTAATTGCGTGCCAGCAAAAATAAGGCGTTGTTGATCAGGAGGA 29636 Query 43003 ACACCTTCTTTTTCGCTGATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGCCTCGA-- 43060 | |||||||| || ||| ||| | | || ||| ||| || | |||| Sbjct 29637 ATTCCTTCTTTGTCATAAATCTTACATTTAAGTTTGTCAATTGTATCAC-----TCGAAG 29691 Query 43061 -CGTCTACC--GTTATAGTTTTTCCGGTTAGAGTTTTCACAAA 43100 ||||| | |||| |||||||| ||||| ||||||||||| Sbjct 29692 CCGTCTCCAATGTTAATGTTTTTCCAGTTAGTGTTTTCACAAA 29734 >seq218 Length=131350 Score = 93.3 bits (102), Expect = 3e-14 Identities = 143/204 (70%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 42906 ATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGACAATGTACGTTCGTCGTCCAATTG 42965 ||||| ||| |||||||| | ||| || || || || ||||| | || |||||||| Sbjct 41582 ATGGAGAGTTGATTCCTTTTGAATATTATAGTCCGATAAAGTACGGCCATCTTCCAATTG 41641 Query 42966 TTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGCACACCTTCTTTTTCGCTGATCAA 43025 ||| ||||| || ||||| || |||||||| | || | |||||| || || ||| Sbjct 41642 TTTACCGGCGAAGATCAAGCGTTGTTGATCTGGGGGGATACCTTCCTTATCTTGAATCTT 41701 Query 43026 CTCTTTGACTCTGCCAACTGTGTCGCCAGCCTCGACGTCTACCGTTATAGTTTTTCCGGT 43085 |||| ||| | | || || | |||||| || | || || ||||| ||||| Sbjct 41702 TGCTTTAACTTGATCTATGGTATCAGAGGACTCGACTTCAAGAGTAATTGTTTTACCGGT 41761 Query 43086 TAGAGTTTTCACAAAAATTTGCAT 43109 ||||| || || ||||||||||| Sbjct 41762 GAGAGTCTTGACGAAAATTTGCAT 41785 Score = 93.3 bits (102), Expect = 3e-14 Identities = 143/204 (70%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 42906 ATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGACAATGTACGTTCGTCGTCCAATTG 42965 ||||| |||| || ||||| | || || || ||||||||||| | || || ||||| Sbjct 42038 ATGGAGAGTGGATTCTTTTTGAATGTTATAGTCTGACAATGTACGACCATCTTCTAATTG 42097 Query 42966 TTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGCACACCTTCTTTTTCGCTGATCAA 43025 ||| || || || ||||| || |||||||| | || | ||||||||| || ||| Sbjct 42098 TTTACCAGCGAAGATCAAGCGTTGTTGATCTGGGGGGATACCTTCTTTATCTTGAATCTT 42157 Query 43026 CTCTTTGACTCTGCCAACTGTGTCGCCAGCCTCGACGTCTACCGTTATAGTTTTTCCGGT 43085 |||| ||| | | | || || | ||| || || | || || ||||| ||||| Sbjct 42158 TGCTTTAACTTGGTCTATGGTATCAGAGGACTCTACTTCAAGAGTGATTGTTTTACCGGT 42217 Query 43086 TAGAGTTTTCACAAAAATTTGCAT 43109 || ||||| || ||||||||||| Sbjct 42218 CAGCGTTTTAACGAAAATTTGCAT 42241 Score = 89.7 bits (98), Expect = 4e-13 Identities = 142/204 (70%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 42906 ATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGACAATGTACGTTCGTCGTCCAATTG 42965 ||||| ||| || ||||| | ||| ||||| ||||| ||||| | || || ||||| Sbjct 41810 ATGGAGAGTTGATTCTTTTTGAATATTATAATCTGACAACGTACGACCATCTTCTAATTG 41869 Query 42966 TTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGCACACCTTCTTTTTCGCTGATCAA 43025 ||| || || || ||||| || |||||||| | || | ||||||||| || ||| Sbjct 41870 TTTACCAGCGAAGATCAAGCGTTGTTGATCTGGAGGGATACCTTCTTTATCTTGAATCTT 41929 Query 43026 CTCTTTGACTCTGCCAACTGTGTCGCCAGCCTCGACGTCTACCGTTATAGTTTTTCCGGT 43085 | ||| ||| | | || || | |||||| || | || || ||||| ||||| Sbjct 41930 CGTTTTTACTTGATCTATGGTATCAGAGGACTCGACTTCAAGAGTAATTGTTTTACCGGT 41989 Query 43086 TAGAGTTTTCACAAAAATTTGCAT 43109 || || || || ||||||||||| Sbjct 41990 GAGGGTCTTGACGAAAATTTGCAT 42013 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 381317561641368