Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhizophagus_20irregularis_20[genbank_20GCA_5F001593125.1_202016-03- 16] 11,196 sequences; 125,353,551 total letters Query= NC_004156.2 Length=231621 Score E Sequences producing significant alignments: (Bits) Value seq54 122 1e-22 seq37 86.0 9e-12 >seq54 Length=215934 Score = 122 bits (134), Expect = 1e-22 Identities = 190/269 (71%), Gaps = 6/269 (2%) Strand=Plus/Plus Query 125019 ATTTGGGAAATGTACAAAAAGGCTCAGGCCTCCTTTTGGACGGTCGAAGAGGTCGATCTG 125078 || ||| |||||||||||||||| | || || |||||||| || || || || || || Sbjct 101414 ATCTGGCAAATGTACAAAAAGGCCGAAGCTTCATTTTGGACTGTTGAGGAAGTTGACCTT 101473 Query 125079 TCCAAGGACCTGTACGATTGGGAGACTCGT-TTGAC--TGAAACTGAGCGAGAGTTTATA 125135 |||||||| || | ||||||||| | || || |||| || | ||||| Sbjct 101474 TCCAAGGATATGAATGATTGGGAGTATAAACTTAACGATGAA---GAAAAATTCTTTATT 101530 Query 125136 TCGCACATTTTGGCCTTCTTTGCCGGCTCCGATGGAATCGTCAACGACAATCTGTTGACA 125195 || ||| |||||||||||||||||| ||| ||||| || ||||| || ||| | || | Sbjct 101531 TCTCACGTTTTGGCCTTCTTTGCCGCCTCGGATGGTATTGTCAATGAAAATTTAGTGGAA 101590 Query 125196 CGATTCTCTCAAGAGTTGACCATTCCAGAGGTGTCGTGCTTTTACGGATTCCAAATCATG 125255 || || | | || | |||||||| | || ||||| ||||| || |||||| Sbjct 101591 CGTTTTAGTAATGAAGTCCAAATTCCAGAAGCAAGATGTTTTTATGGATTTCAGATCATG 101650 Query 125256 ATTGAGAACGTGCACTCGGAAATGTACTC 125284 || || || | || || ||||||||||| Sbjct 101651 ATCGAAAATATCCATTCAGAAATGTACTC 101679 >seq37 Length=134598 Score = 86.0 bits (94), Expect = 9e-12 Identities = 172/253 (68%), Gaps = 4/253 (2%) Strand=Plus/Minus Query 70340 GGCCTCGGTGTACCCTTTAACATTGCAAGCTATTCTATGTTGACGCACATGATTGCTCAC 70399 || || |||||||| |||||||||||||||||| |||| || || || ||||||||||| Sbjct 88486 GGACTTGGTGTACCATTTAACATTGCAAGCTATGCTATATTAACTCATATGATTGCTCAT 88427 Query 70400 ATTACCGGCCTGAAAGCGCACGAGTTCGTACACACCATTGGCGACGCTCACGTGTATTTA 70459 | || || | | || || | || ||||| || || |||| | ||| || Sbjct 88426 GTAACGGGTTGTAGTCCTGGTGAATTTATTCATACCATGGGTGATACTCA--TATATATA 88369 Query 70460 A--ATCACATCGAGCCATTAAAGGTGCAACTCGAACGGGAGCCGAGACCTTTTCCCAAGC 70517 | |||| || | | ||||| ||| ||||||| || || | | | ||||| Sbjct 88368 ATGATCATATTAATGCTTTAAAAACTCAAATCGAACGTGAACCAAAAGCATTTCCTCGTT 88309 Query 70518 TGGAGTTTGCTCGTAAAGTTGAAAATATTGACAGTTTTAAGTACGAAGATTTTATAATAA 70577 || | ||| || ||| || | |||||||| |||||| || || |||||||| || | Sbjct 88308 TGAAATTTAGACGCAAAATTAATAATATTGATGATTTTAAATATGATGATTTTATTATTA 88249 Query 70578 AAGGTTACGATCC 70590 ||||| || || Sbjct 88248 CTGGTTATGAACC 88236 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 740955488764960