Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhizophagus_20irregularis_20[genbank_20GCA_5F001593125.1_202016-03- 16] 11,196 sequences; 125,353,551 total letters Query= NC_004629.1 Length=280334 Score E Sequences producing significant alignments: (Bits) Value seq3016 91.5 3e-13 >seq3016 Length=3907 Score = 91.5 bits (100), Expect = 3e-13 Identities = 115/157 (73%), Gaps = 1/157 (1%) Strand=Plus/Minus Query 271737 AATATGGCTCCGTGACCTGGACTCGAACCAGGGACCCAGTGATTAACAGTCACTTGCTCT 271796 |||||||||||| ||||||||||| |||| | | ||||||| | ||||||| Sbjct 1178 AATATGGCTCCGAAGGTAGGACTCGAACCTACGACCAACCGGTTAACAGCCGGTTGCTCT 1119 Query 271797 ACCGACTGAGCTATCACGGAATTAAATGGCGCGCCCAAGGGGACTCGAACCCCTGACCAC 271856 ||| ||||||||| |||||| |||| | ||| || ||||||||||| |||| | Sbjct 1118 ACC-ACTGAGCTACTTCGGAATATTATGGTGGGCCTAAATGGACTCGAACCATCGACCTC 1060 Query 271857 CCGCGTGACAGGCGGGTATTCTAACCAACTGAACTAT 271893 ||| | |||||| | |||||||| |||| |||| Sbjct 1059 ACGCTTATCAGGCGTGCGCTCTAACCAGCTGAGCTAT 1023 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 896815273135040