Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhizophagus_20irregularis_20[genbank_20GCA_5F001593125.1_202016-03- 16] 11,196 sequences; 125,353,551 total letters Query= NC_005038.1 Length=99657 Score E Sequences producing significant alignments: (Bits) Value seq1465 132 3e-26 seq575 129 4e-25 seq256 105 4e-18 seq218 87.8 1e-12 seq770 86.0 4e-12 >seq1465 Length=43607 Score = 132 bits (146), Expect = 3e-26 Identities = 166/228 (73%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 33142 ACCGCCTCTTAACCGCAACACCAAATGCAATGTCGACTCTTTTTGTATATTGTAATCAGA 33201 ||| |||||||| || | ||| | ||| | || ||||| ||||| ||||||||||| || Sbjct 26785 ACCACCTCTTAAACGGAGCACGAGATGGAGAGTTGACTCCTTTTGGATATTGTAATCTGA 26844 Query 33202 CAAATTGAGTTGGTCATCCAATTGCTTTCCACTAAATATTAAACGTTGCTGGTCCGTGGG 33261 ||| | || || |||||||| || || ||| || || |||||||| |||| ||| Sbjct 26845 CAAGGTACGTCCATCTTCCAATTGTTTACCGGCAAAGATCAAGCGTTGCTGATCCGGGGG 26904 Query 33262 TATGCCTTCTTTTTCGCTAATCGCCTGTTTTACTGTTTGAATCGTGTCGTTGGGTTGAAC 33321 ||||||||||| || |||| | ||| ||| | ||| || || || | || Sbjct 26905 AATGCCTTCTTTGTCTTGAATCTTCGCTTTAACTTGGTCAATGGTATCTGAGGACTCTAC 26964 Query 33322 GTCCAGAGTTATCGTTTTTCCCGTAAGAGTTTTTACGAAAATTTGCAT 33369 || ||||| || ||||| || |||||||| || |||||||||||||| Sbjct 26965 TTCAAGAGTAATAGTTTTACCGGTAAGAGTCTTAACGAAAATTTGCAT 27012 >seq575 Length=50698 Score = 129 bits (142), Expect = 4e-25 Identities = 170/234 (73%), Gaps = 4/234 (2%) Strand=Plus/Plus Query 33143 CCGCCTCTTAACCGCAACACCAAATGCAATGTCGACTCTTTTTGTATATTGTAATCAGAC 33202 || || | ||| || | ||||| || ||||| || |||||||| ||||||||||| || Sbjct 22910 CCACCGCGTAAACGAAGTACCAAGTGTAATGTTGATTCTTTTTGAATATTGTAATCGGA- 22968 Query 33203 AAATTGA--GTTGGTCATCCAATTGCTTTCCACTAAATATTAAACGTTGCTGGTCCGTGG 33260 || ||| || || || || || || ||| ||||||||||||||| || |||| || Sbjct 22969 -AAGTGAACGTCCATCTTCTAACTGTTTACCAGCAAATATTAAACGTTGTTGATCCGGGG 23027 Query 33261 GTATGCCTTCTTTTTCGCTAATCGCCTGTTTTACTGTTTGAATCGTGTCGTTGGGTTGAA 33320 | || |||||||| || ||| | ||| ||| | | || || ||| | || || Sbjct 23028 GGATTCCTTCTTTATCTTGAATTTTTTCTTTGACTTTATCGATGGTATCGCTACTTTCAA 23087 Query 33321 CGTCCAGAGTTATCGTTTTTCCCGTAAGAGTTTTTACGAAAATTTGCATGTTTA 33374 | || | ||| || ||||| || ||||| ||||| || |||||||||||||||| Sbjct 23088 CTTCTAAAGTAATGGTTTTACCAGTAAGTGTTTTAACAAAAATTTGCATGTTTA 23141 >seq256 Length=68436 Score = 105 bits (116), Expect = 4e-18 Identities = 153/214 (71%), Gaps = 8/214 (4%) Strand=Plus/Plus Query 33160 CACCAAATGCAATGTCGACTCTTTTTGTATATTGTAATCAGACAAATTGAGTTGGT-CAT 33218 ||||||||| | ||| ||||||||||| |||||||| ||||| | | ||| || ||| Sbjct 65655 CACCAAATGAAGTGTTGACTCTTTTTGAATATTGTAGTCAGAAA----GGGTTCGTCCAT 65710 Query 33219 CC---AATTGCTTTCCACTAAATATTAAACGTTGCTGGTCCGTGGGTATGCCTTCTTTTT 33275 || | ||| || || || || | ||||||||| || | ||| || |||||||| | Sbjct 65711 CCTCAAGTTGTTTACCGGCGAAAATGAGACGTTGCTGATCTGGGGGAATACCTTCTTTGT 65770 Query 33276 CGCTAATCGCCTGTTTTACTGTTTGAATCGTGTCGTTGGGTTGAACGTCCAGAGTTATCG 33335 | |||| ||||||| | || || ||| | | ||| |||| ||| || | Sbjct 65771 CTTGAATCTTTGCTTTTACTTGATCGATGGTATCGGAAGACTCAACTTCCAAAGTAATGG 65830 Query 33336 TTTTTCCCGTAAGAGTTTTTACGAAAATTTGCAT 33369 ||||||| || |||||||| || ||||||||||| Sbjct 65831 TTTTTCCAGTTAGAGTTTTAACAAAAATTTGCAT 65864 Score = 89.7 bits (98), Expect = 3e-13 Identities = 146/210 (70%), Gaps = 3/210 (1%) Strand=Plus/Plus Query 33173 GTCGACTCTTTTTGTATATTGTAATCAGACAAATTGAGTTGGTCATCCAATTGCTTTCCA 33232 || ||||||||||| || || ||||| || | | | ||| || | ||| || ||| Sbjct 66124 GTTGACTCTTTTTGAATGTTATAATCTGAAAGGGTACGACCGTCTTCAAGTTGTTTGCCA 66183 Query 33233 CTAAATATTAAACGTTGCTGGTCCGTGGGTATGCCTTCTTTTTCGCTAATCGCCTGTTTT 33292 || || | |||||||||||| | ||| || |||||||| || ||| ||| Sbjct 66184 GCGAAAATAAGACGTTGCTGGTCTGGGGGAATTCCTTCTTTGTCTTGAATTTTTGCTTTA 66243 Query 33293 ACTGTTTGAATCGTGTCGTTGGGTTGAACGTCCAGAGTTATCGTTTTTCCCGTAAGAGTT 33352 ||| | ||| |||||| | || ||| || || || || || ||||| ||||| ||| Sbjct 66244 ACTTGGTCAATAGTGTCGGAAGATTCAACTTCAAGGGTGATTGTCTTTCCGGTAAGGGTT 66303 Query 33353 TTTACGAAAATTTGCATGTTTATGGTTAAT 33382 || ||||| ||||||||| || |||||| Sbjct 66304 TTAACGAAGATTTGCATG---ATTGTTAAT 66330 >seq218 Length=131350 Score = 87.8 bits (96), Expect = 1e-12 Identities = 156/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 33142 ACCGCCTCTTAACCGCAACACCAAATGCAATGTCGACTCTTTTTGTATATTGTAATCAGA 33201 ||| |||||||| || | || | ||| | || || |||||||| ||||| ||||| || Sbjct 41786 ACCACCTCTTAAACGGAGTACGAGATGGAGAGTTGATTCTTTTTGAATATTATAATCTGA 41845 Query 33202 CAAATTGAGTTGGTCATCCAATTGCTTTCCACTAAATATTAAACGTTGCTGGTCCGTGGG 33261 ||| | | || || ||||| || ||| || || || ||||| || || | || Sbjct 41846 CAACGTACGACCATCTTCTAATTGTTTACCAGCGAAGATCAAGCGTTGTTGATCTGGAGG 41905 Query 33262 TATGCCTTCTTTTTCGCTAATCGCCTGTTTTACTGTTTGAATCGTGTCGTTGGGTTGAAC 33321 || |||||||| || |||| | ||||||| | || || || || | || Sbjct 41906 GATACCTTCTTTATCTTGAATCTTCGTTTTTACTTGATCTATGGTATCAGAGGACTCGAC 41965 Query 33322 GTCCAGAGTTATCGTTTTTCCCGTAAGAGTTTTTACGAAAATTTGCAT 33369 || ||||| || ||||| || || || || || |||||||||||||| Sbjct 41966 TTCAAGAGTAATTGTTTTACCGGTGAGGGTCTTGACGAAAATTTGCAT 42013 >seq770 Length=40003 Score = 86.0 bits (94), Expect = 4e-12 Identities = 85/110 (77%), Gaps = 0/110 (0%) Strand=Plus/Minus Query 33166 ATGCAATGTCGACTCTTTTTGTATATTGTAATCAGACAAATTGAGTTGGTCATCCAATTG 33225 |||||| || ||||||| ||| ||||| ||||| || ||| | | || |||||||| Sbjct 15256 ATGCAACGTAGACTCTTCTTGAATATTATAATCTGATAAAGTTTTTCCATCCTCCAATTG 15197 Query 33226 CTTTCCACTAAATATTAAACGTTGCTGGTCCGTGGGTATGCCTTCTTTTT 33275 ||| ||| ||| || | |||||||||||| | || ||||||||||||| Sbjct 15196 CTTACCAGCAAAAATAATACGTTGCTGGTCAGGAGGAATGCCTTCTTTTT 15147 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 318734102398008