Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhizophagus_20irregularis_20[genbank_20GCA_5F001593125.1_202016-03- 16] 11,196 sequences; 125,353,551 total letters Query= NC_005902.1 Length=186250 Score E Sequences producing significant alignments: (Bits) Value seq37 152 6e-32 seq9243 116 4e-21 seq75 102 1e-16 seq266 86.0 7e-12 >seq37 Length=134598 Score = 152 bits (168), Expect = 6e-32 Identities = 250/354 (71%), Gaps = 10/354 (3%) Strand=Plus/Plus Query 7055 TATCAGATGGATTCCAAGCAGTCATTAAAATACGTCTATCATTTGGATTTGTTTTTAATT 7114 || ||| ||||||||||||| | | | || ||||||||||||||| | ||||||||| Sbjct 88662 TACCAGCTGGATTCCAAGCACTGAGAATGATTCGTCTATCATTTGGA-GTATTTTTAATT 88720 Query 7115 TTGT-TATAATTATTTGTAATTGATCTATACCCTGACCTTCATAATTAGTATGACAATTT 7173 || | || | ||| | |||||| | ||| | ||| |||| |||| |||| Sbjct 88721 TTATCGATGACCTCTTGCAGTTGATCAACACCTTTACCAGTGTAATCCGTATCGCAATCA 88780 Query 7174 ATATAATTAGCTCCAAAATGTCTCCATTGAAACCCATAAATAGGACCTAAATCACCTTCT 7233 || || | ||| ||||||||||||||||| || ||||||| |||||| |||||||||||| Sbjct 88781 ATGTACTCAGCACCAAAATGTCTCCATTGGAATCCATAAACAGGACCCAAATCACCTTCT 88840 Query 7234 TCACGATGATTAAATCCTAA-TCGATTTAAATTAGATT---TTGATCCATAAGCATCCCA 7289 | | ||| | | | || || | || |||| ||| || |||| | | ||||| Sbjct 88841 TTTCTATG-TGATAGCCCAATTTTATCCAAAT---ATTCACGAGAACCATTACCGTCCCA 88896 Query 7290 AATATGTACAGAtttttttGATAAATTTAAAGAATTTGTAGATCCTTTAAGGAACCATAA 7349 |||||| | | ||||| | ||||| | ||||||| ||||||| |||||||| Sbjct 88897 AATATGAATACCTTTTTCGGTTAAATGTTTGCTATTTGTATTACCTTTAATAAACCATAA 88956 Query 7350 AAGTTCTTCTACTATTCCACGCCAAAACATTCTTTTTGTAGTGAATAAAGGGAA 7403 | |||||||| || ||||| ||| | | || || || |||||||| || Sbjct 88957 TAATTCTTCTATAATAGCACGCGTAAAAACGCGCTTAGTTGTTAATAAAGGTAA 89010 Score = 118 bits (130), Expect = 1e-21 Identities = 241/349 (69%), Gaps = 13/349 (4%) Strand=Plus/Plus Query 6700 GGATGAGGATTATAATC--TAACAATTCAAAATCTTCAAATTTAAAATCACATAAATTAT 6757 |||||||| | |||| | ||| ||| |||||| ||| ||||||||||| | ||||| Sbjct 88230 GGATGAGGTTCATAACCAGTAATAAT--AAAATCATCATATTTAAAATCATCAATATTAT 88287 Query 6758 CAGACtttttttttAATATTACAACAGGTGAAGGTTTTATTGATCGAGTT--AATTGTTC 6815 | | ||| | ||| || ||| | || | ||| | | || ||| | ||| Sbjct 88288 TA-ATTTTGCGTCTAAATTTCAAACGAGGAAATGCTTT-TGGTTCACGTTCGATTTGAGT 88345 Query 6816 TTTTATAGCTTTTATATGATCTAAATAAATATGAGCATCTCCTAGCGTATGAATAAATTC 6875 ||||| ||| || |||||||| ||| ||||||| ||| || | |||||||||||||| Sbjct 88346 TTTTAAAGCATTAATATGATCATTATATATATGAGTATCACCCATGGTATGAATAAATTC 88405 Query 6876 ACCTGGTTTCATATCAACAGCTTGAGCAATTAAATATGTTAATAATGCATAAGAAGCTAC 6935 ||| || | | | | |||||||| | || ||||||| ||||| || | Sbjct 88406 ACCAGGACTACAACCCGTTACATGAGCAATCATATGAGTTAATATAGCATAGCTTGCAAT 88465 Query 6936 ATTAAAAGGTACACCTAATCCCATATCTGCTGATCTTTGATAACATTGACAAGATAAAAT 6995 ||||| |||||||| | ||| | ||| ||||||||||||| |||| ||||| | Sbjct 88466 GTTAAATGGTACACCAAGTCCAACATCACATGATCTTTGATAAAGAAGACACGATAATCT 88525 Query 6996 ATT-GTCT---ATAGCATAAAATTGACACAATACATGACATGGAGGTAA 7040 || || | ||| |||| ||||| || || | ||||||||| ||||| Sbjct 88526 TTTCGTATTTGATA-CATAGAATTGGCAAAACATATGACATGGTGGTAA 88573 >seq9243 Length=648 Score = 116 bits (128), Expect = 4e-21 Identities = 198/279 (71%), Gaps = 10/279 (4%) Strand=Plus/Plus Query 6802 CGAGTTAATTGTTCTTTTA-TAGCTTTTATATGATCTAAATAAATATGAGCATCTCCTAG 6860 ||| ||| ||||| |||| | ||| | | ||||| |||||| ||||| | |||||| | Sbjct 375 CGACTTAGCTGTTCATTTACTTGCTCTAA-ATGATTTAAATAGATATGTGTATCTCCAAA 433 Query 6861 CGTATGAATAAATTCACCTGGTTTCATATCAACAG-CTTGAGCAATTAAATATGTTAATA 6919 |||||| |||||||| | | | | ||| | || |||||||||| |||||| | Sbjct 434 GCTATGAACGAATTCACCAACATCTA-ACCCACATTCATGTGCAATTAAATGTGTTAACA 492 Query 6920 ATGCATAAGAAGCTACATTAAAAGGTACACCTAATCCCATATCTGCTGATCTTTGATAAC 6979 ||||||||||||| | ||| || || || ||||| | ||| || ||||||||| Sbjct 493 ATGCATAAGAAGCGATATTGAACGGCACTCCTAAAAATACATCGGCACTTCTTTGATACA 552 Query 6980 ATTGACAAGATAAAATAT---TGTCTATAGCATAAAATTGACACAATACATGACATGGAG 7036 ||||||||| ||| | | | | || |||||||||| | ||| |||||| || | Sbjct 553 ATTGACAAG--AAAGTTTCCCTTCCGCTA-CATAAAATTGGAAAAATGAATGACAAGGTG 609 Query 7037 GTAAAACAGCCTGATCTATATCAGATGGATTCCAAGCAG 7075 ||||| | || ||| | || | ||||||||| |||| Sbjct 610 GTAAAGCCATCTCATCAACTTCTGCTGGATTCCACGCAG 648 >seq75 Length=117541 Score = 102 bits (112), Expect = 1e-16 Identities = 91/114 (80%), Gaps = 0/114 (0%) Strand=Plus/Plus Query 19394 CAAAAAGGCACATGTGGTATGATTTATCGTCAAGAAGATATGCCTTTTACTAAAGATGGT 19453 |||||||| ||| |||||| | |||||||||||||||||||||||||| || || Sbjct 60702 CAAAAAGGAACAATTGGTATTACATATCGTCAAGAAGATATGCCTTTTACAGCCGAAGGG 60761 Query 19454 ATAGTGCCGGATCTTATTATTAACCCACATGCTTTTCCAAGTCGAATGACGCTT 19507 || | ||||| ||| | ||||| || |||||| |||||||||| |||||| || Sbjct 60762 ATTGCACCGGACCTTGTCATTAATCCTCATGCTATTCCAAGTCGTATGACGATT 60815 >seq266 Length=67660 Score = 86.0 bits (94), Expect = 7e-12 Identities = 109/150 (73%), Gaps = 0/150 (0%) Strand=Plus/Plus Query 19354 AATACCTGAAATAGGTGATAAGTTTGCTTCTTTTACTGCTCAAAAAGGCACATGTGGTAT 19413 ||| || ||||| || ||||| || || | | || ||| ||||| ||| ||| || Sbjct 7189 AATTCCAGAAATTGGAGATAAATTCGCGAGTCGTCATGGTCAGAAAGGAACAATTGGAAT 7248 Query 19414 GATTTATCGTCAAGAAGATATGCCTTTTACTAAAGATGGTATAGTGCCGGATCTTATTAT 19473 | ||||| ||||||||||||||| ||| || ||||||| || || ||||||| Sbjct 7249 CACTTATCATCAAGAAGATATGCCATTTGCTGCTAATGGTATTACACCTGACATTATTAT 7308 Query 19474 TAACCCACATGCTTTTCCAAGTCGAATGAC 19503 || ||||| ||| |||| ||||| ||||| Sbjct 7309 AAATCCACACGCTATTCCTAGTCGTATGAC 7338 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 595788607713600