Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhizophagus_20irregularis_20[genbank_20GCA_5F001593125.1_202016-03- 16] 11,196 sequences; 125,353,551 total letters Query= NC_006549.1 Length=140131 Score E Sequences producing significant alignments: (Bits) Value seq218 107 2e-18 seq256 102 7e-17 seq1465 95.1 1e-14 >seq218 Length=131350 Score = 107 bits (118), Expect = 2e-18 Identities = 167/239 (70%), Gaps = 0/239 (0%) Strand=Plus/Plus Query 94769 AAATTTTACACTCCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACG 94828 ||| ||| || || ||||| || || | || | || | ||| ||||| ||||| | Sbjct 42231 AAAATTTGCATACCACCTCTTAAACGGAGTACGAGATGGAGAGTTGATTCTTTTTGAATA 42290 Query 94829 TTATAATCGCTCATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGC 94888 |||||||| || ||| ||| |||| ||||| || | |||||||| | ||| Sbjct 42291 TTATAATCTGACAAAGTACGCCCATCTTCCAATTGTTTACCAGCGAAGATTAAGCGTTGT 42350 Query 94889 TGATCTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCA 94948 |||||||||||||| ||||| || || | ||| ||||| || || | | ||| ||| Sbjct 42351 TGATCTGGAGGAATTCCTTCCTTATCTTGAATCTTTGCTTTAACTTGATCAATAGTATCA 42410 Query 94949 GCGTGGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 | ||||| |||| || |||||||| |||||||| || || || || || ||||| Sbjct 42411 TTGGACTCGACTTCAAGGGTAATGGTTTTCCCAGTAAGGGTCTTGACGAATATTTGCAT 42469 Score = 96.9 bits (106), Expect = 3e-15 Identities = 140/198 (71%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 94810 AGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAATCCTCCAGCTGTTTTCC 94869 ||||||||| ||||| | |||||||| | ||| | ||| |||| ||||| || Sbjct 41360 AGTAGATTCTTTTTGAATATTATAATCCGATAAAGTACGGCCATCTTCCAATTGTTTACC 41419 Query 94870 GCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTT 94929 | ||||| || | |||||||||||||||||||||||| || || | ||| ||||| || Sbjct 41420 AGCGAAGATCAAGCGTTGCTGATCTGGAGGAATACCTTCCTTATCTTGAATCTTTGCTTT 41479 Query 94930 GACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGT 94989 || | | | || |||| | || || |||| || || ||||| || || || || Sbjct 41480 AACTTGGTCTATGGTATCAGAGGACTCAACTTCAAGGGTAATTGTTTTACCGGTGAGGGT 41539 Query 94990 TTTCACAAAGATCTGCAT 95007 || || || || ||||| Sbjct 41540 CTTGACGAAAATTTGCAT 41557 Score = 96.9 bits (106), Expect = 3e-15 Identities = 167/241 (69%), Gaps = 4/241 (2%) Strand=Plus/Plus Query 94769 AAATTTTACACTCCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACG 94828 ||| ||| || || ||||| || || | || | || | ||| ||||| ||||| | | Sbjct 42003 AAAATTTGCATACCACCTCTTAAACGGAGTACGAGATGGAGAGTGGATTCTTTTTGAATG 42062 Query 94829 TTATAATCGCTCATAGTGTTGGA--ATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTT 94886 ||||| || | | | ||| || ||| || | ||||| || | ||||| || | || Sbjct 42063 TTATAGTC--TGACAATGTACGACCATCTTCTAATTGTTTACCAGCGAAGATCAAGCGTT 42120 Query 94887 GCTGATCTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGT 94946 | |||||||| || ||||||||||| || | ||| ||||| || || | | | || | Sbjct 42121 GTTGATCTGGGGGGATACCTTCTTTATCTTGAATCTTTGCTTTAACTTGGTCTATGGTAT 42180 Query 94947 CAGCGTGGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCA 95006 ||| | || || |||| ||||| ||||| || || || ||||| || || || |||| Sbjct 42181 CAGAGGACTCTACTTCAAGAGTGATTGTTTTACCGGTCAGCGTTTTAACGAAAATTTGCA 42240 Query 95007 T 95007 | Sbjct 42241 T 42241 Score = 93.3 bits (102), Expect = 4e-14 Identities = 164/239 (69%), Gaps = 0/239 (0%) Strand=Plus/Plus Query 94769 AAATTTTACACTCCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACG 94828 ||| ||| || || ||||| || || | || | || | ||| ||||||||||| | Sbjct 41547 AAAATTTGCATACCACCTCTTAAACGAAGTACGAGATGGAGAGTTGATTCCTTTTGAATA 41606 Query 94829 TTATAATCGCTCATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGC 94888 ||||| || | ||| | ||| |||| ||||| ||| | ||||| || | ||| Sbjct 41607 TTATAGTCCGATAAAGTACGGCCATCTTCCAATTGTTTACCGGCGAAGATCAAGCGTTGT 41666 Query 94889 TGATCTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCA 94948 |||||||| || |||||||| || || | ||| ||||| || || | | || ||| Sbjct 41667 TGATCTGGGGGGATACCTTCCTTATCTTGAATCTTTGCTTTAACTTGATCTATGGTATCA 41726 Query 94949 GCGTGGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 | | ||||| |||| || || ||||| || || ||||| || || || || ||||| Sbjct 41727 GAGGACTCGACTTCAAGAGTAATTGTTTTACCGGTGAGAGTCTTGACGAAAATTTGCAT 41785 >seq256 Length=68436 Score = 102 bits (112), Expect = 7e-17 Identities = 116/156 (74%), Gaps = 0/156 (0%) Strand=Plus/Plus Query 94852 ATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTT 94911 |||||| || ||||| ||| | || || | | |||||||||||| |||||||||||||| Sbjct 65709 ATCCTCAAGTTGTTTACCGGCGAAAATGAGACGTTGCTGATCTGGGGGAATACCTTCTTT 65768 Query 94912 GTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGAT 94971 ||| | ||| ||||| || || ||| || || | || || || | || || Sbjct 65769 GTCTTGAATCTTTGCTTTTACTTGATCGATGGTATCGGAAGACTCAACTTCCAAAGTAAT 65828 Query 94972 GGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 |||||||||||| |||||||| ||||| || ||||| Sbjct 65829 GGTTTTTCCAGTTAGAGTTTTAACAAAAATTTGCAT 65864 Score = 102 bits (112), Expect = 7e-17 Identities = 146/204 (72%), Gaps = 4/204 (2%) Strand=Plus/Plus Query 94810 AGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAA--TCCTCCAGCTGTTTT 94867 ||| || || ||||| | ||||||||| | | || || || || || || ||||| Sbjct 66123 AGTTGACTCTTTTTGAATGTTATAATC--TGAAAGGGTACGACCGTCTTCAAGTTGTTTG 66180 Query 94868 CCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATAAATTTTTGCC 94927 || | || || | | |||||| ||||| ||||| ||||||||||| | ||||||||| Sbjct 66181 CCAGCGAAAATAAGACGTTGCTGGTCTGGGGGAATTCCTTCTTTGTCTTGAATTTTTGCT 66240 Query 94928 TTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGA 94987 || || | | | |||||| | || || |||| ||||| || ||||| ||||| Sbjct 66241 TTAACTTGGTCAATAGTGTCGGAAGATTCAACTTCAAGGGTGATTGTCTTTCCGGTAAGG 66300 Query 94988 GTTTTCACAAAGATCTGCATGCTT 95011 ||||| || ||||| |||||| || Sbjct 66301 GTTTTAACGAAGATTTGCATGATT 66324 Score = 87.8 bits (96), Expect = 2e-12 Identities = 144/206 (70%), Gaps = 4/206 (2%) Strand=Plus/Plus Query 94804 GTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGA--ATCCTCCAGC 94861 ||| | ||| ||||| ||||| | ||||||||| | || || || ||| |||| Sbjct 65433 GTGAAGAGTTGATTCTTTTTGGATGTTATAATCCG--AAAGAGTACGACCATCTTCCAAT 65490 Query 94862 TGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATAAATT 94921 || || || | || || || | ||||||||||||||| ||||| ||||| || | |||| Sbjct 65491 TGCTTACCAGCGAAAATCAAACGTTGCTGATCTGGAGGGATACCCTCTTTATCTTGAATT 65550 Query 94922 TTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTTTCCA 94981 || | || || | | || |||| ||||| |||| || || || || ||| Sbjct 65551 TTGGTTTTAACCTGATCAATGGTATCAGATGATTCGACCTCAAGGGTAATCGTCTTACCA 65610 Query 94982 GTAAGAGTTTTCACAAAGATCTGCAT 95007 ||||| ||||| ||||| || ||||| Sbjct 65611 GTAAGTGTTTTTACAAAAATTTGCAT 65636 >seq1465 Length=43607 Score = 95.1 bits (104), Expect = 1e-14 Identities = 109/147 (74%), Gaps = 0/147 (0%) Strand=Plus/Plus Query 94861 CTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATAAAT 94920 |||||| || |||| || |||||||| ||||||||||| |||||||||||||| | ||| Sbjct 26638 CTGTTTGCCAGCAAAAATCAATCTTTGTTGATCTGGAGGGATACCTTCTTTGTCTTGAAT 26697 Query 94921 TTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTTTCC 94980 |||| |||||| | | || |||| || || |||| || || ||||| || Sbjct 26698 CTTTGTCTTGACTTGTTCAATTGTATCAGAAGATTCAACTTCAAGAGTAATAGTTTTCCC 26757 Query 94981 AGTAAGAGTTTTCACAAAGATCTGCAT 95007 || || || || ||||| |||||||| Sbjct 26758 GGTGAGGGTCTTTACAAAAATCTGCAT 26784 Score = 95.1 bits (104), Expect = 1e-14 Identities = 165/240 (69%), Gaps = 0/240 (0%) Strand=Plus/Plus Query 94768 AAAATTTTACACTCCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCAC 94827 |||| | | || || ||||| || || | ||| | || | ||| || |||||||| | Sbjct 26773 AAAAATCTGCATACCACCTCTTAAACGGAGCACGAGATGGAGAGTTGACTCCTTTTGGAT 26832 Query 94828 GTTATAATCGCTCATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTG 94887 || ||||| || || ||| |||| ||||| ||| ||||||| || | ||| Sbjct 26833 ATTGTAATCTGACAAGGTACGTCCATCTTCCAATTGTTTACCGGCAAAGATCAAGCGTTG 26892 Query 94888 CTGATCTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTC 94947 |||||| || ||||| ||||||||||| | ||| || || || || | | | || || Sbjct 26893 CTGATCCGGGGGAATGCCTTCTTTGTCTTGAATCTTCGCTTTAACTTGGTCAATGGTATC 26952 Query 94948 AGCGTGGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 | | || || |||| || || ||||| || |||||||| || || || || ||||| Sbjct 26953 TGAGGACTCTACTTCAAGAGTAATAGTTTTACCGGTAAGAGTCTTAACGAAAATTTGCAT 27012 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 448228461646560