Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhizophagus_20irregularis_20[genbank_20GCA_5F001593125.1_202016-03- 16] 11,196 sequences; 125,353,551 total letters Query= NC_006883.2 Length=252401 Score E Sequences producing significant alignments: (Bits) Value seq41 109 9e-19 >seq41 Length=177922 Score = 109 bits (120), Expect = 9e-19 Identities = 208/303 (69%), Gaps = 4/303 (1%) Strand=Plus/Minus Query 193806 GAACTGTATGGTGGTGTTCTAGGCACTCCACTATCAGAAACCACACCATTTCATCCACGC 193865 ||||| |||||| || | | || || | ||||||||||||||| || |||| || Sbjct 88969 GAACTTTATGGTAAAGTCGTTGAAACACCTCAATCAGAAACCACACCTTTCTATCCTCGT 88910 Query 193866 TCTCCTTATGGTGTAGCAAAGTTGTATGGTTATTGGATCATCAAGAATTATCGTGAGTCA 193925 || |||||||| || || || ||||| | || ||||| | | ||||||||||| | Sbjct 88909 TCACCTTATGGAGTTGCCAAATTGTACGCATACTGGATTGTAACTAATTATCGTGAAGCC 88850 Query 193926 TATGGATTCCACGCTAGTTCTGGTATTCTCTTCAATCACGAATCTCCAAGAAGAGGTGAG 193985 || | ||| || || || | || ||||| |||||||| | | ||| Sbjct 88849 TACAATATGTTTGCTTGTAACGGCGTTTTATTTAATCATGAATCTCCTCGTCGTGGTCGT 88790 Query 193986 ACATTTGTAACTCGTAAGATTACACAAGGTTTATCTAAGATCTCTGTTGGATTACAGAAG 194045 ||||| ||||||||||||||| ||| | | || || | || || |||| || | ||| Sbjct 88789 ACATTCGTAACTCGTAAGATTTCACGTGCTGTAGCTGAAATTTC-CTTGG-GTAAACAAG 88732 Query 194046 ATTCTTTAT--CTTGGTAATCTTAATGCTAAGAGGGATTGGGGACACGCAAAGGATTATG 194103 | | ||| | |||||||| || |||| || | |||||||| || || | |||||| Sbjct 88731 AATGTTTGTGGCTTGGTAACGTTGATGCCAAACGTGATTGGGGTCATGCCAGAGATTATA 88672 Query 194104 TTG 194106 ||| Sbjct 88671 TTG 88669 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 807442182649760