Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhizophagus_20irregularis_20[genbank_20GCA_5F001593125.1_202016-03- 16] 11,196 sequences; 125,353,551 total letters Query= NC_007383.1 Length=134394 Score E Sequences producing significant alignments: (Bits) Value seq256 136 3e-27 seq1592 116 3e-21 seq218 105 6e-18 seq575 98.7 9e-16 seq645 87.8 2e-12 seq1465 84.2 2e-11 >seq256 Length=68436 Score = 136 bits (150), Expect = 3e-27 Identities = 156/210 (74%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 |||||| | ||||| ||||| ||||||||||| | ||||| | ||||| ||| | | Sbjct 65864 ATGCAAATTTTTGTTAAAACTCTAACTGGAAAAACCATTACTTTGGAAGTTGAGTCTTCC 65805 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 || |||||||| ||||| ||| ||||||| ||||||||||| || || || ||||| Sbjct 65804 GATACCATCGATCAAGTAAAAGCAAAGATTCAAGACAAAGAAGGTATTCCCCCAGATCAG 65745 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAAC 24170 || | || |||| || ||| || ||||| || |||| ||| | | || || || Sbjct 65744 CAACGTCTCATTTTCGCCGGTAAACAACTTGAGGATGGACGAACCCTTTCTGACTACAAT 65685 Query 24171 ATTCAAAAAGAATCTACAATTCATTTAGTG 24200 ||||||||||| || ||| ||||||| ||| Sbjct 65684 ATTCAAAAAGAGTCAACACTTCATTTGGTG 65655 Score = 102 bits (112), Expect = 7e-17 Identities = 148/209 (71%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 |||||| | || || ||||| | || ||||| | || ||| | ||||| || | | Sbjct 66320 ATGCAAATCTTCGTTAAAACCCTTACCGGAAAGACAATCACCCTTGAAGTTGAATCTTCC 66261 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 ||||| || || ||||| ||| ||| ||| ||||||||||| || || || || || Sbjct 66260 GACACTATTGACCAAGTTAAAGCAAAAATTCAAGACAAAGAAGGAATTCCCCCAGACCAG 66201 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAAC 24170 || | || |||| || ||||| ||||| ||||| | | | | | ||||||||| Sbjct 66200 CAACGTCTTATTTTCGCTGGCAAACAACTTGAAGACGGTCGTACCCTTTCAGATTATAAC 66141 Query 24171 ATTCAAAAAGAATCTACAATTCATTTAGT 24199 ||||||||||| || || ||||| |||| Sbjct 66140 ATTCAAAAAGAGTCAACTCTTCATCTAGT 66112 Score = 100 bits (110), Expect = 2e-16 Identities = 144/203 (71%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 |||||| | |||||||||||| | ||||| || |||||||| | || ||||| | Sbjct 65636 ATGCAAATTTTTGTAAAAACACTTACTGGTAAGACGATTACCCTTGAGGTCGAATCATCT 65577 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 || ||||| || || || ||| || ||| || ||||| || || ||||| ||||| Sbjct 65576 GATACCATTGATCAGGTTAAAACCAAAATTCAAGATAAAGAGGGTATCCCTCCAGATCAG 65517 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAAC 24170 || | |||||| || || |||||| | ||||||| | | | ||||||||| Sbjct 65516 CAACGTTTGATTTTCGCTGGTAAGCAATTGGAAGATGGTCGTACTCTTTCGGATTATAAC 65457 Query 24171 ATTCAAAAAGAATCTACAATTCA 24193 || ||||||||||| || |||| Sbjct 65456 ATCCAAAAAGAATCAACTCTTCA 65434 Score = 84.2 bits (92), Expect = 2e-11 Identities = 141/204 (69%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 |||||| | || ||||| ||| | || || ||| | || ||| | || || ||| || Sbjct 66092 ATGCAAATCTTCGTAAAGACACTCACCGGCAAAACCATCACCTTGGACGTAGAGTCCTCG 66033 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 || |||||||| ||||| ||| || ||| || || || || || || || || || Sbjct 66032 GATACCATCGACCAAGTAAAAACCAAAATTCAAGATAAGGAGGGTATCCCCCCAGACCAG 65973 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAAC 24170 || | || |||| || || || ||||| || |||| ||| | | ||| || || Sbjct 65972 CAACGTCTCATTTTCGCTGGTAAACAACTTGAGGATGGACGAACCCTTTCCGACTACAAT 65913 Query 24171 ATTCAAAAAGAATCTACAATTCAT 24194 |||||||||||||| || ||||| Sbjct 65912 ATTCAAAAAGAATCCACTCTTCAT 65889 >seq1592 Length=32188 Score = 116 bits (128), Expect = 3e-21 Identities = 162/226 (72%), Gaps = 1/226 (0%) Strand=Plus/Minus Query 23997 GTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAACGACACC 24056 |||| || |||||||||||||||||| | | || || ||||||||| | || || Sbjct 12627 GTGTACGTTAAAACATTAACTGGAAAAACTCTAACAATTGAAGTCGAGTTTAGTGATACA 12568 Query 24057 ATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAACAGAGA 24116 || || ||| | ||| ||| ||||| || |||||||| ||||| || |||||||| ||| Sbjct 12567 ATTGATCAATTAAAAACAAAAATTACTGAAAAAGAAGGTATACCACCAGATCAACAAAGA 12508 Query 24117 CTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAACATTCAA 24176 | |||| | || |||||||| ||||||| | | | | || ||||| || || Sbjct 12507 TTAATTTTTGCTGGTAAGCAACTTGAAGATGGCCGTACTTTAAGTGATTACAATATATGT 12448 Query 24177 AAAGAATCTACAATTCATTTAGTGTTAAGATTGAGAGGAGGACTAT 24222 || || || | |||||||| |||||||| || || || |||| Sbjct 12447 GTTGAGTCCACGCTACATTTAGTATTAAGATTAAGGGGTGG-CTAT 12403 >seq218 Length=131350 Score = 105 bits (116), Expect = 6e-18 Identities = 144/199 (72%), Gaps = 4/199 (2%) Strand=Plus/Minus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 |||||| | || || || || | ||||| ||| | |||||| | ||||||||| |||| Sbjct 42469 ATGCAAATATTCGTCAAGACCCTTACTGGGAAAACCATTACCCTTGAAGTCGAGTCCAAT 42410 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 || || || || ||||| ||| ||||||| || || ||||| || ||||| |||||| Sbjct 42409 GATACTATTGATCAAGTTAAAGCAAAGATTCAAGATAAGGAAGGAATTCCTCCAGATCAA 42350 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAAC--GTCAGCGATTATA 24168 || | | || | || || || ||| | ||||||| | | ||||| |||||| Sbjct 42349 CAACGCTTAATCTTCGCTGGTAAACAATTGGAAGATGGGCGTACTTTGTCAG--ATTATA 42292 Query 24169 ACATTCAAAAAGAATCTAC 24187 | |||||||||||||| || Sbjct 42291 ATATTCAAAAAGAATCAAC 42273 Score = 102 bits (112), Expect = 7e-17 Identities = 143/198 (72%), Gaps = 2/198 (1%) Strand=Plus/Minus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 |||||| | || || || || | || || ||| | |||||| | ||||| ||| || Sbjct 41557 ATGCAAATTTTCGTCAAGACCCTCACCGGTAAAACAATTACCCTTGAAGTTGAGTCCTCT 41498 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 || ||||| || ||||| ||| ||||||| || || ||||| || ||||| ||||| Sbjct 41497 GATACCATAGACCAAGTTAAAGCAAAGATTCAAGATAAGGAAGGTATTCCTCCAGATCAG 41438 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCG-ATTATAA 24169 || | |||| | || || || ||| | ||||||| | | | | | | || ||||||| Sbjct 41437 CAACGCTTGATCTTCGCTGGTAAACAATTGGAAGATGGCCGTA-CTTTATCGGATTATAA 41379 Query 24170 CATTCAAAAAGAATCTAC 24187 ||||||||||||||||| Sbjct 41378 TATTCAAAAAGAATCTAC 41361 Score = 98.7 bits (108), Expect = 9e-16 Identities = 142/198 (72%), Gaps = 2/198 (1%) Strand=Plus/Minus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 |||||| | || || || || | || || ||| | ||||| | ||||||||| || Sbjct 42013 ATGCAAATTTTCGTCAAGACCCTCACCGGTAAAACAATTACTCTTGAAGTCGAGTCCTCT 41954 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 || ||||| || ||||| ||| |||||| || |||||||| || ||||| |||||| Sbjct 41953 GATACCATAGATCAAGTAAAAACGAAGATTCAAGATAAAGAAGGTATCCCTCCAGATCAA 41894 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGC-GATTATAA 24169 || | |||| | || || || ||| | ||||||| | | ||| | |||||||| Sbjct 41893 CAACGCTTGATCTTCGCTGGTAAACAATTAGAAGATGGTCGTA-CGTTGTCAGATTATAA 41835 Query 24170 CATTCAAAAAGAATCTAC 24187 |||||||||||||| || Sbjct 41834 TATTCAAAAAGAATCAAC 41817 Score = 93.3 bits (102), Expect = 4e-14 Identities = 141/199 (71%), Gaps = 4/199 (2%) Strand=Plus/Minus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 |||||| | || || ||||| | || || ||| | || || | ||||| ||| || Sbjct 42241 ATGCAAATTTTCGTTAAAACGCTGACCGGTAAAACAATCACTCTTGAAGTAGAGTCCTCT 42182 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 || ||||| || ||||| ||| ||||||| || |||||||| || || || |||||| Sbjct 42181 GATACCATAGACCAAGTTAAAGCAAAGATTCAAGATAAAGAAGGTATCCCCCCAGATCAA 42122 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAAC--GTCAGCGATTATA 24168 || | |||| | || || || ||| | ||||||| | | ||||| | |||| Sbjct 42121 CAACGCTTGATCTTCGCTGGTAAACAATTAGAAGATGGTCGTACATTGTCAG--ACTATA 42064 Query 24169 ACATTCAAAAAGAATCTAC 24187 |||||||||||||||| || Sbjct 42063 ACATTCAAAAAGAATCCAC 42045 >seq575 Length=50698 Score = 98.7 bits (108), Expect = 9e-16 Identities = 151/213 (71%), Gaps = 2/213 (1%) Strand=Plus/Minus Query 23988 AAAATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCC 24047 || |||||| | ||||| |||||| | ||||| ||| | ||||| | ||||| || Sbjct 23139 AACATGCAAATTTTTGTTAAAACACTTACTGGTAAAACCATTACTTTAGAAGTTGAAAGT 23080 Query 24048 AACGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGAT 24107 | ||| |||||||| |||||||| |||| ||| || |||||||| || || || ||| Sbjct 23079 AGCGATACCATCGATAAAGTCAAAGAAAAAATTCAAGATAAAGAAGGAATCCCCCCGGAT 23020 Query 24108 CAACAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATG-ACAGAAACGTCAGCGATTA 24166 ||||| | | || | | || || || | ||||||| || || | |||||| Sbjct 23019 CAACAACGTTTAATATTTGCTGGTAAACAGTTAGAAGATGGACGTTCACTTTC-CGATTA 22961 Query 24167 TAACATTCAAAAAGAATCTACAATTCATTTAGT 24199 || |||||||||||||| ||| | || || || Sbjct 22960 CAATATTCAAAAAGAATCAACATTACACTTGGT 22928 >seq645 Length=46104 Score = 87.8 bits (96), Expect = 2e-12 Identities = 159/228 (70%), Gaps = 6/228 (3%) Strand=Plus/Minus Query 23994 CAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC-GA 24052 || || ||||| |||||| ||||||||||| | |||| ||| | || || | | || Sbjct 29740 CAGGTATTTGTGAAAACACTAACTGGAAAAAC-ATTAACATTGGAGACGGCTTCGAGTGA 29682 Query 24053 CACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAACA 24112 || || || || | ||| |||||| ||||||||||| || ||||| |||||||| Sbjct 29681 TACAATTGACAAACTTAAATGTAAGATTTATGACAAAGAAGGAATTCCTCCTGATCAACA 29622 Query 24113 GAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAAC--GTCAGCGATTATAAC 24170 | || |||| | |||| |||| | ||||| | | | | |||| |||||| | Sbjct 29621 ACGCCTTATTTTTGCTGGCACGCAATTAGAAGAAGGACGTACCTTGTCA--GATTATTAT 29564 Query 24171 ATTCAAAAAGAATCTACAATTCATTTAGTGTTAAGATTGAGAGGAGGA 24218 || |||||||| | ||||||||| | || | ||| | | |||||| Sbjct 29563 ATCCAAAAAGAGTGCACAATTCATCTTGTACTTAGACTACGTGGAGGA 29516 >seq1465 Length=43607 Score = 84.2 bits (92), Expect = 2e-11 Identities = 157/229 (69%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 |||||| | || || || || | || || ||| | ||||| | ||||| ||| || Sbjct 27012 ATGCAAATTTTCGTTAAGACTCTTACCGGTAAAACTATTACTCTTGAAGTAGAGTCCTCA 26953 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 || ||||| || ||||| ||| |||||| |||||||||||||| || || ||||| Sbjct 26952 GATACCATTGACCAAGTTAAAGCGAAGATTCAAGACAAAGAAGGCATTCCCCCGGATCAG 26893 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAAC--GTCAGCGATTATA 24168 || | |||| | | ||| || ||| | ||||||| | | | |||| ||||| | Sbjct 26892 CAACGCTTGATCTTTGCCGGTAAACAATTGGAAGATGGACGTACCTTGTCA--GATTACA 26835 Query 24169 ACATTCAAAAAGAATCTACAATTCATTTAGTGTTAAGATTGAGAGGAGG 24217 | || ||||| || || || | ||| | ||| | | || ||||| || Sbjct 26834 ATATCCAAAAGGAGTCAACTCTCCATCTCGTGCTCCGTTTAAGAGGTGG 26786 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 429877334695380