Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhizophagus_20irregularis_20[genbank_20GCA_5F001593125.1_202016-03- 16] 11,196 sequences; 125,353,551 total letters Query= NC_008168.1 Length=104710 Score E Sequences producing significant alignments: (Bits) Value seq575 159 2e-34 seq3623 140 2e-28 seq2523 140 2e-28 seq1807 140 2e-28 seq1465 140 2e-28 seq779 140 2e-28 seq256 116 2e-21 seq218 114 9e-21 seq695 98.7 7e-16 seq2756 93.3 3e-14 seq953 86.0 4e-12 seq645 84.2 1e-11 >seq575 Length=50698 Score = 159 bits (176), Expect = 2e-34 Identities = 174/231 (75%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 38091 CCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGAC 38150 ||||| | ||||| | ||||| || | || || ||||||||||||||||| || Sbjct 22910 CCACCGCGTAAACGAAGTACCAAGTGTAATGTTGATTCTTTTTGAATATTGTAATCGGAA 22969 Query 38151 AAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGG 38210 | |||| | || ||||| ||||| || |||||||||| ||||||||||| | |||| Sbjct 22970 AGTGAACGTCCATCTTCTAACTGTTTACCAGCAAATATTAAACGTTGTTGATCCGGGGGG 23029 Query 38211 ACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAACT 38270 | |||||||| || |||||||| || || || | || ||||| | |||||||||| Sbjct 23030 ATTCCTTCTTTATCTTGAATTTTTTCTTTGACTTTATCGATGGTATCGCTACTTTCAACT 23089 Query 38271 TCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCATGTTT 38321 ||||| ||||| |||||||| || | ||||| || || || ||||||||| Sbjct 23090 TCTAAAGTAATGGTTTTACCAGTAAGTGTTTTAACAAAAATTTGCATGTTT 23140 >seq3623 Length=2819 Score = 140 bits (154), Expect = 2e-28 Identities = 88/95 (93%), Gaps = 5/95 (5%) Strand=Plus/Plus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 |||||||||||||||||||||||||||||||||||||||||||| || |||||||| Sbjct 2524 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGGACAGTGGGAATCTCGT 2583 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 |||||| |||||||||||||||||||||||||||| Sbjct 2584 TAATCCATTCATGCGCGTCACTAATTAGATGACGA 2618 >seq2523 Length=5993 Score = 140 bits (154), Expect = 2e-28 Identities = 88/95 (93%), Gaps = 5/95 (5%) Strand=Plus/Minus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 |||||||||||||||||||||||||||||||||||||||||||| || |||||||| Sbjct 1489 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGGACAGTGGGAATCTCGT 1430 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 |||||| |||||||||||||||||||||||||||| Sbjct 1429 TAATCCATTCATGCGCGTCACTAATTAGATGACGA 1395 >seq1807 Length=19749 Score = 140 bits (154), Expect = 2e-28 Identities = 88/95 (93%), Gaps = 5/95 (5%) Strand=Plus/Minus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 |||||||||||||||||||||||||||||||||||||||||||| || |||||||| Sbjct 296 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGGACAGTGGGAATCTCGT 237 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 |||||| |||||||||||||||||||||||||||| Sbjct 236 TAATCCATTCATGCGCGTCACTAATTAGATGACGA 202 >seq1465 Length=43607 Score = 140 bits (154), Expect = 2e-28 Identities = 172/232 (74%), Gaps = 6/232 (3%) Strand=Plus/Plus Query 38089 TACCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAG 38148 |||||||||| ||||| | ||| | ||| ||||| ||||||||| ||||||||||| | Sbjct 26784 TACCACCTCTTAAACGGAGCACGAGATGGAGAGTTGACTCCTTTTGGATATTGTAATCTG 26843 Query 38149 ACAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGG 38208 |||| |||| | || || |||||||| |||||||| || | |||||| ||||| | || Sbjct 26844 ACAAGGTACGTCCATCTTCCAATTGTTTACCGGCAAAGATCAAGCGTTGCTGATCCGGGG 26903 Query 38209 GGACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACA---GTATCTCCACTTT 38265 | | ||||||||||| | | | | || |||| | | ||| || |||||| | Sbjct 26904 GAATGCCTTCTTTGT-CTTGAATCTTCGCTTTAACT--TGGTCAATGGTATCTGAGGACT 26960 Query 38266 CAACTTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCAT 38317 | ||||| | |||||||||||||| || | || || ||||| || ||||| Sbjct 26961 CTACTTCAAGAGTAATAGTTTTACCGGTAAGAGTCTTAACGAAAATTTGCAT 27012 >seq779 Length=47677 Score = 140 bits (154), Expect = 2e-28 Identities = 88/95 (93%), Gaps = 5/95 (5%) Strand=Plus/Minus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 |||||||||||||||||||||||||||||||||||||||||||| || |||||||| Sbjct 296 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGGACAGTGGGAATCTCGT 237 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 |||||| |||||||||||||||||||||||||||| Sbjct 236 TAATCCATTCATGCGCGTCACTAATTAGATGACGA 202 >seq256 Length=68436 Score = 116 bits (128), Expect = 2e-21 Identities = 163/229 (71%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 38089 TACCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAG 38148 ||||||| | | ||| | |||||||||||| || ||| |||||||||||||| |||| Sbjct 65636 TACCACCACGAAGACGAAGCACCAAATGAAGTGTTGACTCTTTTTGAATATTGTAGTCAG 65695 Query 38149 ACAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGG 38208 | | ||| | || || | |||||| ||||| || || || ||||| ||||| | || Sbjct 65696 AAAGGGTTCGTCCATCCTCAAGTTGTTTACCGGCGAAAATGAGACGTTGCTGATCTGGGG 65755 Query 38209 GGACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAA 38268 | | ||||||||||| ||| ||| || || | | || ||||| | |||| Sbjct 65756 GAATACCTTCTTTGTCTTGAATCTTTGCTTTTACTTGATCGATGGTATCGGAAGACTCAA 65815 Query 38269 CTTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCAT 38317 |||| || ||||| ||||| || || | ||||| || || || ||||| Sbjct 65816 CTTCCAAAGTAATGGTTTTTCCAGTTAGAGTTTTAACAAAAATTTGCAT 65864 Score = 91.5 bits (100), Expect = 1e-13 Identities = 145/208 (70%), Gaps = 0/208 (0%) Strand=Plus/Plus Query 38114 ATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGACAAAACACGTTCGTCGTCTAATTG 38173 ||||||||| ||| |||||||| || ||||| || | ||| |||| || | ||| Sbjct 66117 ATGAAGAGTTGACTCTTTTTGAATGTTATAATCTGAAAGGGTACGACCGTCTTCAAGTTG 66176 Query 38174 TTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGGACGCCTTCTTTGTCCATAATTTT 38233 ||| || || || || || ||||| || || | ||| | ||||||||||| |||||| Sbjct 66177 TTTGCCAGCGAAAATAAGACGTTGCTGGTCTGGGGGAATTCCTTCTTTGTCTTGAATTTT 66236 Query 38234 TTGCTTCACATTCTGGACAGTATCTCCACTTTCAACTTCTAATGTAATAGTTTTACCCGT 38293 | || || | | | ||| || | ||||||||| | || || || || || || Sbjct 66237 TGCTTTAACTTGGTCAATAGTGTCGGAAGATTCAACTTCAAGGGTGATTGTCTTTCCGGT 66296 Query 38294 CAAGGTTTTCACGAATATCTGCATGTTT 38321 | |||||| ||||| || |||||| || Sbjct 66297 AAGGGTTTTAACGAAGATTTGCATGATT 66324 >seq218 Length=131350 Score = 114 bits (126), Expect = 9e-21 Identities = 165/231 (71%), Gaps = 4/231 (2%) Strand=Plus/Plus Query 38089 TACCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAG 38148 |||||||||| ||||| | || | ||| ||||| || ||||||||||| ||||| | Sbjct 42241 TACCACCTCTTAAACGGAGTACGAGATGGAGAGTTGATTCTTTTTGAATATTATAATCTG 42300 Query 38149 ACAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGG 38208 ||||| ||| | || || |||||||| || || || |||| |||||||||||| | | Sbjct 42301 ACAAAGTACGCCCATCTTCCAATTGTTTACCAGCGAAGATTAAGCGTTGTTGATCTGGAG 42360 Query 38209 GGACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATC--TCCACTTTC 38266 | | ||||| || || ||| ||| || || | | | |||||| | || || Sbjct 42361 GAATTCCTTCCTTATCTTGAATCTTTGCTTTAACTTGATCAATAGTATCATTGGAC--TC 42418 Query 38267 AACTTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCAT 38317 ||||| | ||||| ||||| || || | ||| || |||||||| ||||| Sbjct 42419 GACTTCAAGGGTAATGGTTTTCCCAGTAAGGGTCTTGACGAATATTTGCAT 42469 Score = 111 bits (122), Expect = 1e-19 Identities = 162/229 (71%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 38089 TACCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAG 38148 |||||||||| ||||| | || | ||| |||||| || |||||||| || || || | Sbjct 42013 TACCACCTCTTAAACGGAGTACGAGATGGAGAGTGGATTCTTTTTGAATGTTATAGTCTG 42072 Query 38149 ACAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGG 38208 |||| ||| | || ||||||||||| || || || || | |||||||||||| | || Sbjct 42073 ACAATGTACGACCATCTTCTAATTGTTTACCAGCGAAGATCAAGCGTTGTTGATCTGGGG 42132 Query 38209 GGACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAA 38268 ||| |||||||| || ||| ||| || || | | | ||||| || | Sbjct 42133 GGATACCTTCTTTATCTTGAATCTTTGCTTTAACTTGGTCTATGGTATCAGAGGACTCTA 42192 Query 38269 CTTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCAT 38317 |||| | || || |||||||| |||| ||||| ||||| || ||||| Sbjct 42193 CTTCAAGAGTGATTGTTTTACCGGTCAGCGTTTTAACGAAAATTTGCAT 42241 Score = 107 bits (118), Expect = 1e-18 Identities = 161/229 (70%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 38089 TACCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAG 38148 |||||||||| ||||| | || | ||| ||||| |||||||||||||| || || | Sbjct 41557 TACCACCTCTTAAACGAAGTACGAGATGGAGAGTTGATTCCTTTTGAATATTATAGTCCG 41616 Query 38149 ACAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGG 38208 | ||| ||| | || || |||||||| ||||| || || | |||||||||||| | || Sbjct 41617 ATAAAGTACGGCCATCTTCCAATTGTTTACCGGCGAAGATCAAGCGTTGTTGATCTGGGG 41676 Query 38209 GGACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAA 38268 ||| ||||| || || ||| ||| || || | | | ||||| || | Sbjct 41677 GGATACCTTCCTTATCTTGAATCTTTGCTTTAACTTGATCTATGGTATCAGAGGACTCGA 41736 Query 38269 CTTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCAT 38317 |||| | ||||| |||||||| || | || || ||||| || ||||| Sbjct 41737 CTTCAAGAGTAATTGTTTTACCGGTGAGAGTCTTGACGAAAATTTGCAT 41785 Score = 107 bits (118), Expect = 1e-18 Identities = 161/229 (70%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 38089 TACCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAG 38148 |||||||||| ||||| | || | ||| ||||| || ||||||||||| ||||| | Sbjct 41785 TACCACCTCTTAAACGGAGTACGAGATGGAGAGTTGATTCTTTTTGAATATTATAATCTG 41844 Query 38149 ACAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGG 38208 |||| ||| | || ||||||||||| || || || || | |||||||||||| | | Sbjct 41845 ACAACGTACGACCATCTTCTAATTGTTTACCAGCGAAGATCAAGCGTTGTTGATCTGGAG 41904 Query 38209 GGACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAA 38268 ||| |||||||| || ||| || || || | | | ||||| || | Sbjct 41905 GGATACCTTCTTTATCTTGAATCTTCGTTTTTACTTGATCTATGGTATCAGAGGACTCGA 41964 Query 38269 CTTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCAT 38317 |||| | ||||| |||||||| || | ||| || ||||| || ||||| Sbjct 41965 CTTCAAGAGTAATTGTTTTACCGGTGAGGGTCTTGACGAAAATTTGCAT 42013 Score = 107 bits (118), Expect = 1e-18 Identities = 97/121 (80%), Gaps = 1/121 (1%) Strand=Plus/Plus Query 38089 TACCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAG 38148 |||||||||| | ||| | || | ||||||||| ||| || ||||| |||||||||| Sbjct 42469 TACCACCTCTAAGACGGAGTACGAGATGAAGAGTTGACTCTTTCTGAATGTTGTAATCAG 42528 Query 38149 ACAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGAT-CGGAG 38207 | || |||| |||| || || |||||||||||||| |||| ||||||||||| ||||| Sbjct 42529 ATAAGCTACGTCCGTCTTCCAACTGTTTTCCGGCAAAGATTAAGCGTTGTTGATCCGGAG 42588 Query 38208 G 38208 | Sbjct 42589 G 42589 Score = 82.4 bits (90), Expect = 5e-11 Identities = 155/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 38090 ACCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGA 38149 |||||| | | ||| | || | ||| ||||| || ||||||||||| ||||| || Sbjct 41330 ACCACCCCGAAGACGAAGTACGAGATGGAGAGTAGATTCTTTTTGAATATTATAATCCGA 41389 Query 38150 CAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGG 38209 ||| ||| | || || |||||||| || || || || | |||||| ||||| | || Sbjct 41390 TAAAGTACGGCCATCTTCCAATTGTTTACCAGCGAAGATCAAGCGTTGCTGATCTGGAGG 41449 Query 38210 GACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAAC 38269 | ||||| || || ||| ||| || || | | | ||||| ||||| Sbjct 41450 AATACCTTCCTTATCTTGAATCTTTGCTTTAACTTGGTCTATGGTATCAGAGGACTCAAC 41509 Query 38270 TTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCAT 38317 ||| | ||||| |||||||| || | ||| || ||||| || ||||| Sbjct 41510 TTCAAGGGTAATTGTTTTACCGGTGAGGGTCTTGACGAAAATTTGCAT 41557 >seq695 Length=42890 Score = 98.7 bits (108), Expect = 7e-16 Identities = 68/77 (88%), Gaps = 0/77 (0%) Strand=Plus/Minus Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGC 20006 |||||| |||||||||||||||| ||||||||||||| ||||||||||||| |||||| | Sbjct 33699 CTCTCTTTTCAAAGTTCTTTTCATCTTTCCCTCACGGAACTTGTTCGCTATTGGTCTCTC 33640 Query 20007 GGTAATATTTAGCCTTA 20023 | |||||||||||| Sbjct 33639 GCCGTTATTTAGCCTTA 33623 Score = 96.9 bits (106), Expect = 2e-15 Identities = 69/77 (90%), Gaps = 3/77 (4%) Strand=Plus/Minus Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGC 20006 |||||| ||||| |||||||||| ||||||||||||||||||||||||||| ||| |||| Sbjct 25026 CTCTCTTTTCAA-GTTCTTTTCATCTTTCCCTCACGGTACTTGTTCGCTATTGGTTTCGC 24968 Query 20007 GGTAATATTTAGCCTTA 20023 || |||||||||||| Sbjct 24967 CGT--TATTTAGCCTTA 24953 >seq2756 Length=10097 Score = 93.3 bits (102), Expect = 3e-14 Identities = 66/76 (87%), Gaps = 0/76 (0%) Strand=Plus/Minus Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGC 20006 |||||| |||||||| ||||||| ||||||||| ||||||||||| |||||||||||| | Sbjct 6396 CTCTCTTTTCAAAGTCCTTTTCATCTTTCCCTCGCGGTACTTGTTTGCTATCGGTCTCTC 6337 Query 20007 GGTAATATTTAGCCTT 20022 | ||||||||||| Sbjct 6336 GCCTGTATTTAGCCTT 6321 >seq953 Length=29662 Score = 86.0 bits (94), Expect = 4e-12 Identities = 65/77 (84%), Gaps = 0/77 (0%) Strand=Plus/Plus Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGC 20006 |||||| |||||||| |||||| |||| ||||||||||||||||||||| ||||| | Sbjct 23918 CTCTCTTTTCAAAGTATTTTTCATCTTTTTTTCACGGTACTTGTTCGCTATCAGTCTCTC 23977 Query 20007 GGTAATATTTAGCCTTA 20023 | ||||||||||||| Sbjct 23978 GCCGATATTTAGCCTTA 23994 >seq645 Length=46104 Score = 84.2 bits (92), Expect = 1e-11 Identities = 89/116 (77%), Gaps = 1/116 (1%) Strand=Plus/Plus Query 38114 ATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGACAAAACACGTTCGTCGTCTAATTG 38173 ||||| |||| ||| ||||| |||| ||||| ||||| |||| | || |||||||| Sbjct 29540 ATGAATTGTGCACTCTTTTTGGATATAATAATCTGACAAGGTACGTCCTTCTTCTAATTG 29599 Query 38174 TTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGGACGCCTTCTTTGTCCATAA 38229 | || ||||| || |||||||||||||| | || | |||||||||| ||||| Sbjct 29600 CGTGCCAGCAAAAATAAGGCGTTGTTGATCAGGAGGAATTCCTTCTTTGT-CATAA 29654 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 334901496035876