Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhizophagus_20irregularis_20[genbank_20GCA_5F001593125.1_202016-03- 16] 11,196 sequences; 125,353,551 total letters Query= NC_008291.1 Length=198050 Score E Sequences producing significant alignments: (Bits) Value seq1647 349 4e-91 seq54 190 3e-43 seq370 111 2e-19 >seq1647 Length=14880 Score = 349 bits (386), Expect = 4e-91 Identities = 678/991 (68%), Gaps = 20/991 (2%) Strand=Plus/Minus Query 62992 TTCGAACTCGTCTCCCCAAACATTGTCCAGT---CCAGGACATTCATCCGGA-CACATCA 63047 ||| || || || |||||||||| ||| | |||||| |||| ||||| || || | Sbjct 3414 TTCAAATTCATCACCCCAAACAT---CCATTAAACCAGGAGCTTCAGCCGGATCAAATAA 3358 Query 63048 ACGACCACTCTCCGTCATCCTTCA-CTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCT 63106 || | | | || | | |||| | | ||||||||| ||||| | || |||||| || Sbjct 3357 ACTCCAATTATCATT--TGATTCAACCCTTTTCATAAAAAGATCCGAAACCCAAAGTGCA 3300 Query 63107 ATAAATAGATCTCTGGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAAC 63166 ||||| ||| | | | | ||| || ||||| ||||| ||||| | ||| | || Sbjct 3299 TAAAATAAATCCCGTGCACGAACTTCTTCTTTTCCAGTATTTTTTTTTAAATCCATAAAA 3240 Query 63167 GCCATAATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCAGGCCGTTTGTTT 63226 | | ||| |||| |||||||| ||| || || || || | | || || ||||||||| Sbjct 3239 TCAAAAATGTCAGGATGCCACGTTTCTAAATAAATAGCAAACGCGCCCGGACGTTTGTTT 3180 Query 63227 CCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCA 63286 ||||| ||||| | |||||||| || ||||||||||| | ||||| |||||||| ||| Sbjct 3179 CCTCCTTGATCAACATATCTAGCAGTATTATTATAAACGCGTAACATGGGAATAATTCCA 3120 Query 63287 TTGGATGTACCATTGGTCCCTGAGATATAGCTTCCACTGGCACGAATATTACTAATTGAT 63346 || || |||||| || || | ||||| ||| | |||||||| ||| ||| Sbjct 3119 TTTGAATAACCATTTGTTCCAGCAATATAAGATCCTGTCGCACGAATGTTATGAATGTTC 3060 Query 63347 AGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGATG 63406 | ||| || || ||||| | ||||| || | ||||||| ||| || ||||||||||| Sbjct 3059 ACACCAATACCACCTGCAGTCTTAGAAATCATTGCGCATGTTTTCAAAGTATCATAGATT 3000 Query 63407 CCCTCTATACTATCATCCATCAT-GTTAAGTAGAAAACAGCTAGACATTTGGTGACGACT 63465 |||||||| |||||| |||| ||||| |||||||| || || | ||| | | | Sbjct 2999 CCCTCTATTGAATCATCTTTCATAGTTAAA-AGAAAACAACTCGAAAGTTGAGGTCTAGG 2941 Query 63466 AGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGAGTAAACCATTTTTCAGAAAGTAGATT 63525 || || |||||||| || || ||||| ||||||||||| | ||||| || | ||||| Sbjct 2940 TGTGCCAGCATTAAACAAAGTCGGAGATGCGTGAGTAAAGAACTTTTCTGACATCAGATT 2881 Query 63526 GTACGTCTCAATAGCTGAGTCTATATCCCATTGATGAATTCCTACTGCGACACGCATTAA 63585 ||| || |||||||| | || ||||| | ||||| || || || || ||||| | Sbjct 2880 GTAAGTTTCAATAGCAGCTTCGATATCATCTCCGTGAATCCCAACCGCTACGCGCATAAG 2821 Query 63586 CATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTATTTTCAACAAGTAGGATTTTTCCAA 63645 ||| || || || | || | | || |||| || | || ||| |||| | Sbjct 2820 CATATGTTGGGGACGCTCGGCAACTTTTCCACCTATTCGTAAAAGATAAGATCTTTCAAG 2761 Query 63646 AGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAATAACCGAGTTGAG 63705 ||||||||| |||||||| || ||| | | |||| || ||||| || || || || Sbjct 2760 AGTTTTAAATCCAAAATAATTATATTTATAATCTCTATCATAAATGATCGTAGAATTAAG 2701 Query 63706 TTTATCCTTATATTTGTTAACTACATCCATGGTAATACTT----GAAATAATAGGAAAAT 63761 ||| ||| | ||||| | ||| || ||| || ||||| || | Sbjct 2700 TTTTTCC---GAATTGTTCATCACA-ATATTATAAGTTTTTTCAGAAATCATTGACGCGC 2645 Query 63762 GTTTCCCATTTTTAGGATTGACATAGTTGAATAAATCCTCCATCACTTCACTAAATAGtt 63821 ||||||| |||| ||||| | ||| || | | ||| || | || | ||| | || Sbjct 2644 GTTTCCCTGTTTTCGGATTTATATAATTATAAAGATCTTCAACAACATTGGAAAAAACTT 2585 Query 63822 tttttGTTTCTTTGTGTAGATTTGATACGGCTATTCTAGCGGCTAGAATGGCATAATCCG 63881 |||| |||||||| || ||||| || || || || | ||| || || | |||||| |||| Sbjct 2584 TTTTAGTTTCTTTATGAAGATTAGAAACAGCAATACGAGCAGCAAGGACGGCATAGTCCG 2525 Query 63882 GATGTTGTGTAGTACAAGTGGCTGCTATTTCGGCTGCCAGAGTGTCCAATTCTACCGTTG 63941 |||||| || || | || || |||| || |||| | | || ||||| || || Sbjct 2524 GATGTTTAGTCGTCATATACGCGGCCGTTTCTGCAGCCAAATTATCTAATTCAACAGTGC 2465 Query 63942 TTACACCATTATATATTCCTTGGATAACCTT 63972 | ||||| | ||| | |||| || ||||| Sbjct 2464 TAACACCTTGATAAACTCCTGAAATGACCTT 2434 Score = 109 bits (120), Expect = 7e-19 Identities = 144/200 (72%), Gaps = 0/200 (0%) Strand=Plus/Minus Query 62732 ACAAACATGTTCAATGCAACAGATGCCAGATTACAAACGGCTACCTCATTAGCATCCGCA 62791 ||||||||| |||||| | | |||| ||||| || || || |||| | || | Sbjct 3745 ACAAACATGGGCAATGCTATACTAGCCAAGTTACATACAGCAACTTCATCCGGGCTCGAA 3686 Query 62792 TATTGTATTATCTCAGTGCAAAGATTACTACACTTGATGGTTCCTAAATTTTGTTGATTA 62851 |||| | ||||| || || | ||||||||| ||||| || || | ||||||||||||| Sbjct 3685 TATTCAACAATCTCTGTACACAAATTACTACATTTGATTGTACCAAGATTTTGTTGATTA 3626 Query 62852 CTCTTTTTGTTACACGCATCCTTATAAAGAATGAATGGAGTACCAGTTTCAATCTGAGAT 62911 || ||||| | ||| || || || || |||| ||||| ||||| ||||| ||| Sbjct 3625 GATTTACGATTACAAGAATCTTTGTAGAGCATATATGGTGTACCCGTTTCGATCTGGGAT 3566 Query 62912 TCTATAATCGCTTTCCAGAC 62931 || | ||| ||| ||||||| Sbjct 3565 TCAAGAATTGCTGTCCAGAC 3546 >seq54 Length=215934 Score = 190 bits (210), Expect = 3e-43 Identities = 323/458 (71%), Gaps = 10/458 (2%) Strand=Plus/Minus Query 32357 CATAACTCCCATTTTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTACCTTC 32416 ||||||||| |||||| || || || |||||||| || ||||| |||||||||| Sbjct 102353 CATAACTCCAGCTTTTTGATAATCTGATACGCGTTTTTCAAAGAAATTTGTTTTACCTTG 102294 Query 32417 TAATGATATATTTTCCATGAAATCGAATGGATTGGTAACATTATA-AAtttttttAAATC 32475 ||| || ||||| ||||| || ||||| |||||| |||||| | | Sbjct 102293 TAAACTAATTAAATCCATAAAATCAAAAGGATTCTCTGAATTATACAATTTTGCTCCA-- 102236 Query 32476 CCAATT--CAGAAATCAATCTATCTGCGACAAATTCTATATATGTTTTCATCAT-TTCAC 32532 |||| | || ||| |||||||| || |||||||| |||||| ||||||| | ||| | Sbjct 102235 CCAAGTGCCACTAAT-AATCTATCAGCTACAAATTCAATATATTTTTTCATTAAATTCGC 102177 Query 32533 AATTCATTCCTATAAGTTTAACTGGAAGAGCCACAGTAAGAAATTCTTGTTCAATAGAGA 32592 ||||| || || | |||||||| | || | || | |||||||||||| || | | Sbjct 102176 G-TTCATACCAATTAAATTAACTGGTAATGCTTCTGTTAAAAATTCTTGTTCTATTGTAA 102118 Query 32593 CCGCGTCTGTTATAATAGATCTTACTGTTTCTTCACTCGGTGGATACAATAA-ATGTTTA 32651 |||| || | |||||||| | ||| |||| | ||| | | || || ||| | Sbjct 102117 CCGCTTCCGCTATAATAGCTTCTACAGTTTTTGTTGGAGGTCG-TGCACGAAGATGAGTG 102059 Query 32652 AACATCAAACATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAA 32711 || | | |||||| ||||| || || | || || |||| | ||||| |||||||||| Sbjct 102058 AATAAGAGACATGCAAAATCACAATGCAATCCTTCATCTCGAGAAATTAGTTCGTTGGAA 101999 Query 32712 AACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGATCCA 32771 || || | ||| ||||| | || | || || | |||||| || ||||| || | |||| Sbjct 101998 AAAGTTAATCCTGGCATCATTCCTCTTTTCTTTAACCAAAAGATTGACGCGAAAGCTCCA 101939 Query 32772 GAAAAGAAAATTCCTTCTACTGCCGCAAAGGCAATAAG 32809 |||||||| |||||||| || || ||||| || | ||| Sbjct 101938 GAAAAGAATATTCCTTCAACAGCGGCAAACGCTACAAG 101901 Score = 174 bits (192), Expect = 2e-38 Identities = 217/294 (74%), Gaps = 5/294 (2%) Strand=Plus/Minus Query 32922 TCTTTAACATATGTATCAATCAAAAGACTATACATTTCCGAATGAATGTTTTCAATGGCC 32981 || || | ||| | ||||||||| || |||||||| ||||| || ||||| || Sbjct 101706 TCCTTGATATAAGAATCAATCAAGAGGGAGTACATTTCTGAATGGATATTTTCGATCATG 101647 Query 32982 ATTTGAAATCCGTAGAAGCATCTAGCCTCGGTAATCTGTACTTCTGTACAAAATCGTTCT 33041 || |||||||| || || ||||| || || | ||| || ||||| ||| ||| ||||| Sbjct 101646 ATCTGAAATCCATAAAAACATCTTGCTTCTGGAATTTGGACTTCATTACTAAAACGTTCC 101587 Query 33042 GCTAAATTTTCATTCACTATTCCGTCACTGGCTGCAAAAAACGCCAATACATGTTTTATA 33101 ||||||||||||| || || || || ||| ||||| || ||||| || || ||| Sbjct 101586 ACTAAATTTTCATTGACAATACCATCCGAGGCGGCAAAGAAGGCCAAAACGTGAGAAATA 101527 Query 33102 AAATATTTTTCGTC-TGGTGTTAGTTTA---TTCCAATCATTGATATCTTTAGATATATC 33157 || ||||||| || | || | |||||| | ||||||||| ||||| || || | || Sbjct 101526 AAGAATTTTTCTTCATCGT-TAAGTTTATACTCCCAATCATTCATATCCTTGGAAAGGTC 101468 Query 33158 CACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACATATTCCAGAT 33211 ||||| || || ||||||||||| || || |||||||| ||||| | |||||| Sbjct 101467 AACTTCCTCAACAGTCCAAAATGAAGCTTCGGCCTTTTTGTACATTTGCCAGAT 101414 >seq370 Length=116867 Score = 111 bits (122), Expect = 2e-19 Identities = 139/191 (73%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 63416 CTATCATCCATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGACGACTAGTTCCCGCA 63475 |||||||| |||| | | || ||| ||||| |||||||| | | || || ||| Sbjct 20320 CTATCATCTTTCATTTGCACTAAAAAGCAGCTTGACATTTGTGGTCTTGGTGTACCAGCA 20379 Query 63476 TTAAATAAGGTAGGAGAAGCGTGAGTAAACCATTTTTCAGAAAGTAGATTGTACGTCTCA 63535 ||||| || || ||| || |||||||| |||| || || | || ||| || || ||| Sbjct 20380 TTAAACAAAGTTGGACTTGCATGAGTAAAATATTTCTCGGACATTAAATTATAAGTTTCA 20439 Query 63536 ATAGCTGAGTCTATATCCCATTGATGAATTCCTACTGCGACACGCATTAACATGTGCTGA 63595 ||||||| || ||||| | ||||||||| | | |||||||| |||||||| || Sbjct 20440 ATAGCTGCATCAATATCATAACCATGAATTCCAATAGAAACACGCATCAACATGTGTTGT 20499 Query 63596 GGTCTTTCAAC 63606 ||||||||||| Sbjct 20500 GGTCTTTCAAC 20510 Score = 86.0 bits (94), Expect = 8e-12 Identities = 192/286 (67%), Gaps = 8/286 (3%) Strand=Plus/Plus Query 62600 GGTCTATGTCTCTTATTAGAGATTTCAGCTTCTGGAATAGGATAATAATTAATATCTATA 62659 |||||||||||||| ||| ||||||||||||||| ||||||||||| ||| || Sbjct 19192 GGTCTATGTCTCTTGTTACTTTTTTCAGCTTCTGGAACGGGATAATAATTTTCATCAATG 19251 Query 62660 ATTTTATTGAGATTTCTGACAATTACTTTGACCACATCCTTCAGTTTGAGAAAATCAAA- 62718 | |||||| | ||| | | || ||||| | | || | || || | |||||||| Sbjct 19252 ACTTTATTTAAATTCTTTATAACAACTTTAGCAATTTCATGAAGCTTCAAGAAATCAAAA 19311 Query 62719 ----TCGCCCATCTATT-ACAAACATGTTCAATGCAACAGATGCCAGATTACAAACGGCT 62773 ||| |||| ||||| | |||| || || || | ||||||||||||| Sbjct 19312 GTTTTCGATTTGGTATTAACAAATTTAGGTAATGAAATTGAAGCTAAATTACAAACGGCT 19371 Query 62774 ACCTCATTAGCATCCGCATATTGTATTATCTCAGTGCAAAGATTACTACACTTGATGGTT 62833 || |||| | | | ||||| | || ||||| || | |||| || | || || Sbjct 19372 ACTTCATCGGGTGCAGTATATTCAACAATTTCAGTACATAAATTAGAGCATGTTATAGTA 19431 Query 62834 CCTAAATTTTGTTGATTACTCTTTTTGTTACACGCATCCTTATAAA 62879 || | ||| | ||||||| |||| ||||| | ||| |||||| Sbjct 19432 CCAAGATTCTTTTGATTAGATTTTTCATTACAAGAATC--TATAAA 19475 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 633543323201600