Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhizophagus_20irregularis_20[genbank_20GCA_5F001593125.1_202016-03- 16] 11,196 sequences; 125,353,551 total letters Query= NC_008518.1 Length=174059 Score E Sequences producing significant alignments: (Bits) Value seq54 168 7e-37 >seq54 Length=215934 Score = 168 bits (186), Expect = 7e-37 Identities = 210/287 (73%), Gaps = 3/287 (1%) Strand=Plus/Minus Query 93362 ATGTATGTATCGATTAACAGAGAATACATTTCAGAATGGACATTCTCCATTGCAATTTGG 93421 || || | ||| || || || || |||||||| ||||||| ||| || || || || Sbjct 101700 ATATAAGAATCAATCAAGAGGGAGTACATTTCTGAATGGATATTTTCGATCATGATCTGA 101641 Query 93422 AATCCGTAGAAACATCTAGCTTCCGTGATCTGCACTTCTTGAGAAAATCTCTCTACGAGA 93481 ||||| || |||||||| ||||| | || || ||||| | | ||| | || || | | Sbjct 101640 AATCCATAAAAACATCTTGCTTCTGGAATTTGGACTTCATTACTAAAACGTTCCACTAAA 101581 Query 93482 TTTTCATTGACTATACCATCGGATGCTGCaaaaaaaGCCAATATATGCTTTATAAAATGT 93541 ||||||||||| |||||||| || || ||||| || ||||| | || ||||| | Sbjct 101580 TTTTCATTGACAATACCATCCGAGGCGGCAAAGAAGGCCAAAACGTGAGAAATAAAGAAT 101521 Query 93542 TTCTCATCATCTTTAAGCTTA---TCCCAATCGGATAGATCTTTTGAAAGATCGACTTCT 93598 || || ||||| ||||| ||| |||||||| | ||| || ||||| || ||||| Sbjct 101520 TTTTCTTCATCGTTAAGTTTATACTCCCAATCATTCATATCCTTGGAAAGGTCAACTTCC 101461 Query 93599 TCGACAGTCCAAAACGATGCTTCTGCTTTTTTGTACATATCCCATAT 93645 || ||||||||||| || ||||| || ||||||||||| | ||| || Sbjct 101460 TCAACAGTCCAAAATGAAGCTTCGGCCTTTTTGTACATTTGCCAGAT 101414 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 556782867331040