Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhizophagus_20irregularis_20[genbank_20GCA_5F001593125.1_202016-03- 16] 11,196 sequences; 125,353,551 total letters Query= NC_008520.2 Length=132239 Score E Sequences producing significant alignments: (Bits) Value seq575 122 7e-23 seq256 113 4e-20 seq218 105 6e-18 seq1465 95.1 1e-14 >seq575 Length=50698 Score = 122 bits (134), Expect = 7e-23 Identities = 174/243 (72%), Gaps = 4/243 (2%) Strand=Plus/Minus Query 111180 TTTAAAAATGCAAATTTTTGTCAAAACGATGACCGGCAAAACCATTACCGTGGAAACGGA 111239 |||||| |||||||||||||| ||||| | || || ||||||||||| | ||| || Sbjct 23143 TTTAAACATGCAAATTTTTGTTAAAACACTTACTGGTAAAACCATTACTTTAGAAGTTGA 23084 Query 111240 ACCCAGCGATTCTGTTGGCCAGGTAAAACAAAAAATTGCCGACAAAGAAGGCGTTCCCGT 111299 | |||||| | | | | || ||| |||||||| || |||||||| | ||| Sbjct 23083 AAGTAGCGATACCATCGATAAAGTCAAAGAAAAAATTCAAGATAAAGAAGGAATCCCCCC 23024 Query 111300 CGATCAACAAAGGCTTATTTATGCGGGCAAACAATTGGAAGAT--TCTAAAACTATGGCC 111357 ||||||||| | | || | ||| || ||||| || |||||| | ||| | || Sbjct 23023 GGATCAACAACGTTTAATATTTGCTGGTAAACAGTTAGAAGATGGACGTTCACTTT--CC 22966 Query 111358 GATTATAATATACAAAAAGAATCTACACTACATTTAGTGTTGCGTCTGCGCGGTGGCAAT 111417 ||||| ||||| ||||||||||| ||| |||| || || | ||| | ||||||||| | Sbjct 22965 GATTACAATATTCAAAAAGAATCAACATTACACTTGGTACTTCGTTTACGCGGTGGCGGT 22906 Query 111418 AAA 111420 ||| Sbjct 22905 AAA 22903 >seq256 Length=68436 Score = 113 bits (124), Expect = 4e-20 Identities = 161/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 111187 ATGCAAATTTTTGTCAAAACGATGACCGGCAAAACCATTACCGTGGAAACGGAACCCAGC 111246 |||||||||||||| ||||| | || || ||||||||||| ||||| || | | Sbjct 65864 ATGCAAATTTTTGTTAAAACTCTAACTGGAAAAACCATTACTTTGGAAGTTGAGTCTTCC 65805 Query 111247 GATTCTGTTGGCCAGGTAAAACAAAAAATTGCCGACAAAGAAGGCGTTCCCGTCGATCAA 111306 ||| | | | || |||||| ||| ||| ||||||||||| ||||| ||||| Sbjct 65804 GATACCATCGATCAAGTAAAAGCAAAGATTCAAGACAAAGAAGGTATTCCCCCAGATCAG 65745 Query 111307 CAAAGGCTTATTTATGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAAT 111366 ||| | || |||| || || |||||| | || ||| ||| | | || || ||| Sbjct 65744 CAACGTCTCATTTTCGCCGGTAAACAACTTGAGGATGGACGAACCCTTTCTGACTACAAT 65685 Query 111367 ATACAAAAAGAATCTACACTACATTTAGTGTTGCGTCTGCGCGGTGG 111413 || |||||||| || ||||| ||||| ||| | ||||| || ||||| Sbjct 65684 ATTCAAAAAGAGTCAACACTTCATTTGGTGCTTCGTCTTCGTGGTGG 65638 Score = 104 bits (114), Expect = 2e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 111187 ATGCAAATTTTTGTCAAAACGATGACCGGCAAAACCATTACCGTGGAAACGGAACCCAGC 111246 |||||||| || || ||||| | ||||| || || || ||| | ||| ||| | | Sbjct 66320 ATGCAAATCTTCGTTAAAACCCTTACCGGAAAGACAATCACCCTTGAAGTTGAATCTTCC 66261 Query 111247 GATTCTGTTGGCCAGGTAAAACAAAAAATTGCCGACAAAGAAGGCGTTCCCGTCGATCAA 111306 || || ||| ||| || ||| ||||||| ||||||||||| ||||| || || Sbjct 66260 GACACTATTGACCAAGTTAAAGCAAAAATTCAAGACAAAGAAGGAATTCCCCCAGACCAG 66201 Query 111307 CAAAGGCTTATTTATGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAAT 111366 ||| | ||||||| || ||||||||| | ||||| | || | | |||||||| Sbjct 66200 CAACGTCTTATTTTCGCTGGCAAACAACTTGAAGACGGTCGTACCCTTTCAGATTATAAC 66141 Query 111367 ATACAAAAAGAATCTACACTACATTTAGTGTTGCGTCTGCGCGGTGG 111413 || |||||||| || || || ||| |||| | || || ||||| || Sbjct 66140 ATTCAAAAAGAGTCAACTCTTCATCTAGTACTTCGACTTCGCGGAGG 66094 Score = 86.0 bits (94), Expect = 5e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 111187 ATGCAAATTTTTGTCAAAACGATGACCGGCAAAACCATTACCGTGGAAACGGAACCCAGC 111246 |||||||||||||| ||||| | || || || || |||||| | || ||| | Sbjct 65636 ATGCAAATTTTTGTAAAAACACTTACTGGTAAGACGATTACCCTTGAGGTCGAATCATCT 65577 Query 111247 GATTCTGTTGGCCAGGTAAAACAAAAAATTGCCGACAAAGAAGGCGTTCCCGTCGATCAA 111306 ||| | ||| ||||| ||| |||||| || ||||| || | || ||||| Sbjct 65576 GATACCATTGATCAGGTTAAAACCAAAATTCAAGATAAAGAGGGTATCCCTCCAGATCAG 65517 Query 111307 CAAAGGCTTATTTATGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAAT 111366 ||| | | |||| || || || |||||||||||| | ||| | | |||||||| Sbjct 65516 CAACGTTTGATTTTCGCTGGTAAGCAATTGGAAGATGGTCGTACTCTTTCGGATTATAAC 65457 Query 111367 ATACAAAAAGAATCTACACTACATTTAGTGTTGCGTCTGCGCGGTGG 111413 || ||||||||||| || || || | || | ||||| || ||||| Sbjct 65456 ATCCAAAAAGAATCAACTCTTCACCTCGTCCTCCGTCTCCGTGGTGG 65410 >seq218 Length=131350 Score = 105 bits (116), Expect = 6e-18 Identities = 164/233 (70%), Gaps = 1/233 (0%) Strand=Plus/Minus Query 111187 ATGCAAATTTTTGTCAAAACGATGACCGGCAAAACCATTACCGTGGAAACGGAACCCAGC 111246 ||||||||||| ||||| || | ||||| ||||| |||||| | ||| || || Sbjct 41557 ATGCAAATTTTCGTCAAGACCCTCACCGGTAAAACAATTACCCTTGAAGTTGAGTCCTCT 41498 Query 111247 GATTCTGTTGGCCAGGTAAAACAAAAAATTGCCGACAAAGAAGGCGTTCCCGTCGATCAA 111306 ||| | | | ||| || ||| ||| ||| || || ||||| |||| ||||| Sbjct 41497 GATACCATAGACCAAGTTAAAGCAAAGATTCAAGATAAGGAAGGTATTCCTCCAGATCAG 41438 Query 111307 CAAAGGCTTATTTATGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAAT 111366 ||| | | || | || || ||||||||||||||| ||| | | ||||||||| Sbjct 41437 CAACGCTTGATCTTCGCTGGTAAACAATTGGAAGATGGCCGTACTTTATCGGATTATAAT 41378 Query 111367 ATACAAAAAGAATCTACACTACATTTAGTGTTGCGTCTGCGCGGTGG-CAATA 111418 || |||||||||||||| || ||| | || | ||||| || ||||| ||||| Sbjct 41377 ATTCAAAAAGAATCTACTCTCCATCTCGTACTTCGTCTTCGGGGTGGTCAATA 41325 Score = 104 bits (114), Expect = 2e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 111187 ATGCAAATTTTTGTCAAAACGATGACCGGCAAAACCATTACCGTGGAAACGGAACCCAGC 111246 |||||||| || ||||| || | || || |||||||||||| | ||| || ||| Sbjct 42469 ATGCAAATATTCGTCAAGACCCTTACTGGGAAAACCATTACCCTTGAAGTCGAGTCCAAT 42410 Query 111247 GATTCTGTTGGCCAGGTAAAACAAAAAATTGCCGACAAAGAAGGCGTTCCCGTCGATCAA 111306 ||| || ||| || || ||| ||| ||| || || ||||| |||| |||||| Sbjct 42409 GATACTATTGATCAAGTTAAAGCAAAGATTCAAGATAAGGAAGGAATTCCTCCAGATCAA 42350 Query 111307 CAAAGGCTTATTTATGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAAT 111366 ||| | | || | || || ||||||||||||||| ||| || | ||||||||| Sbjct 42349 CAACGCTTAATCTTCGCTGGTAAACAATTGGAAGATGGGCGTACTTTGTCAGATTATAAT 42290 Query 111367 ATACAAAAAGAATCTACACTACATTTAGTGTTGCGTCTGCGCGGTGG 111413 || ||||||||||| || || ||| | || | ||| | | ||||| Sbjct 42289 ATTCAAAAAGAATCAACTCTCCATCTCGTACTCCGTTTAAGAGGTGG 42243 Score = 89.7 bits (98), Expect = 4e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 111187 ATGCAAATTTTTGTCAAAACGATGACCGGCAAAACCATTACCGTGGAAACGGAACCCAGC 111246 ||||||||||| || |||||| ||||||| ||||| || || | ||| || || Sbjct 42241 ATGCAAATTTTCGTTAAAACGCTGACCGGTAAAACAATCACTCTTGAAGTAGAGTCCTCT 42182 Query 111247 GATTCTGTTGGCCAGGTAAAACAAAAAATTGCCGACAAAGAAGGCGTTCCCGTCGATCAA 111306 ||| | | | ||| || ||| ||| ||| || |||||||| | ||| |||||| Sbjct 42181 GATACCATAGACCAAGTTAAAGCAAAGATTCAAGATAAAGAAGGTATCCCCCCAGATCAA 42122 Query 111307 CAAAGGCTTATTTATGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAAT 111366 ||| | | || | || || |||||||| |||||| | || || | || ||||| Sbjct 42121 CAACGCTTGATCTTCGCTGGTAAACAATTAGAAGATGGTCGTACATTGTCAGACTATAAC 42062 Query 111367 ATACAAAAAGAATCTACACTACATTTAGTGTTGCGTCTGCGCGGTGG 111413 || ||||||||||| || || ||| | || | ||| | | ||||| Sbjct 42061 ATTCAAAAAGAATCCACTCTCCATCTCGTACTCCGTTTAAGAGGTGG 42015 Score = 86.0 bits (94), Expect = 5e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 111187 ATGCAAATTTTTGTCAAAACGATGACCGGCAAAACCATTACCGTGGAAACGGAACCCAGC 111246 ||||||||||| ||||| || | ||||| ||||| ||||| | ||| || || Sbjct 42013 ATGCAAATTTTCGTCAAGACCCTCACCGGTAAAACAATTACTCTTGAAGTCGAGTCCTCT 41954 Query 111247 GATTCTGTTGGCCAGGTAAAACAAAAAATTGCCGACAAAGAAGGCGTTCCCGTCGATCAA 111306 ||| | | | || |||||| || ||| || |||||||| | || |||||| Sbjct 41953 GATACCATAGATCAAGTAAAAACGAAGATTCAAGATAAAGAAGGTATCCCTCCAGATCAA 41894 Query 111307 CAAAGGCTTATTTATGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAAT 111366 ||| | | || | || || |||||||| |||||| | || || | ||||||||| Sbjct 41893 CAACGCTTGATCTTCGCTGGTAAACAATTAGAAGATGGTCGTACGTTGTCAGATTATAAT 41834 Query 111367 ATACAAAAAGAATCTACACTACATTTAGTGTTGCGTCTGCGCGGTGG 111413 || ||||||||||| || || ||| | || | ||| | | ||||| Sbjct 41833 ATTCAAAAAGAATCAACTCTCCATCTCGTACTCCGTTTAAGAGGTGG 41787 >seq1465 Length=43607 Score = 95.1 bits (104), Expect = 1e-14 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 111187 ATGCAAATTTTTGTCAAAACGATGACCGGCAAAACCATTACCGTGGAAACGGAACCCAGC 111246 ||||||||||| || || || | ||||| ||||| ||||| | ||| || || Sbjct 27012 ATGCAAATTTTCGTTAAGACTCTTACCGGTAAAACTATTACTCTTGAAGTAGAGTCCTCA 26953 Query 111247 GATTCTGTTGGCCAGGTAAAACAAAAAATTGCCGACAAAGAAGGCGTTCCCGTCGATCAA 111306 ||| | ||| ||| || ||| || ||| |||||||||||| ||||| ||||| Sbjct 26952 GATACCATTGACCAAGTTAAAGCGAAGATTCAAGACAAAGAAGGCATTCCCCCGGATCAG 26893 Query 111307 CAAAGGCTTATTTATGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAAT 111366 ||| | | || | ||| || ||||||||||||||| || || | ||||| ||| Sbjct 26892 CAACGCTTGATCTTTGCCGGTAAACAATTGGAAGATGGACGTACCTTGTCAGATTACAAT 26833 Query 111367 ATACAAAAAGAATCTACACTACATTTAGTGTTGCGTCTGCGCGGTGG 111413 || ||||| || || || || ||| | ||| | ||| | | ||||| Sbjct 26832 ATCCAAAAGGAGTCAACTCTCCATCTCGTGCTCCGTTTAAGAGGTGG 26786 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 422982275663200