Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhizophagus_20irregularis_20[genbank_20GCA_5F001593125.1_202016-03- 16] 11,196 sequences; 125,353,551 total letters Query= NC_008724.1 Length=288047 Score E Sequences producing significant alignments: (Bits) Value seq256 163 5e-35 seq218 149 1e-30 seq575 143 5e-29 seq1465 132 9e-26 seq325 93.3 8e-14 seq645 86.0 1e-11 >seq256 Length=68436 Score = 163 bits (180), Expect = 5e-35 Identities = 174/230 (76%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 ||||||||||| || | ||| | || || || ||||||||||| ||||||||||| || Sbjct 66094 CCTCCGCGAAGTCGAAGTACTAGATGAAGAGTTGACTCTTTTTGAATGTTATAATCTGAA 66153 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 || || | || ||||| | || || || ||||| || || | ||| ||||| || ||| Sbjct 66154 AGGGTACGACCGTCTTCAAGTTGTTTGCCAGCGAAAATAAGACGTTGCTGGTCTGGGGGA 66213 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414 || ||||| ||||||||||| ||||| || || || || ||||| | ||||| ||| Sbjct 66214 ATTCCTTCTTTGTCTTGAATTTTTGCTTTAACTTGGTCAATAGTGTCGGAAGATTCAACT 66273 Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCATTAT 68464 || | |||||| || ||||| || ||||| || ||||| || ||||| || Sbjct 66274 TCAAGGGTGATTGTCTTTCCGGTAAGGGTTTTAACGAAGATTTGCATGAT 66323 Score = 152 bits (168), Expect = 9e-32 Identities = 170/227 (75%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 || || ||||| || | ||||| || || || ||||||||||| || || || || || Sbjct 65638 CCACCACGAAGACGAAGCACCAAATGAAGTGTTGACTCTTTTTGAATATTGTAGTCAGAA 65697 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 || || | ||||| || | || || |||||||| ||||| | ||| || || || ||| Sbjct 65698 AGGGTTCGTCCATCCTCAAGTTGTTTACCGGCGAAAATGAGACGTTGCTGATCTGGGGGA 65757 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414 || ||||| ||||||||||||||||| || || |||||||| || | || || ||| Sbjct 65758 ATACCTTCTTTGTCTTGAATCTTTGCTTTTACTTGATCGATGGTATCGGAAGACTCAACT 65817 Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 ||||| || ||||||||||| || || || || || || || ||||| Sbjct 65818 TCCAAAGTAATGGTTTTTCCAGTTAGAGTTTTAACAAAAATTTGCAT 65864 Score = 143 bits (158), Expect = 5e-29 Identities = 168/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 || || ||||| || | || | || || ||||| |||||||| || || || ||||| Sbjct 65866 CCGCCACGAAGACGGAGAACGAGATGAAGAGTGGATTCTTTTTGAATATTGTAGTCGGAA 65925 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 || || | ||||| || | || || || ||||| ||||| | ||| ||||| || || Sbjct 65926 AGGGTTCGTCCATCCTCAAGTTGTTTACCAGCGAAAATGAGACGTTGCTGGTCTGGGGGG 65985 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414 || || ||||| |||||||| || | || || |||||||| || | || ||||| Sbjct 65986 ATACCCTCCTTATCTTGAATTTTGGTTTTTACTTGGTCGATGGTATCCGAGGACTCTACG 66045 Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 ||||||||||||||||| || ||||| ||||| ||||| || ||||| Sbjct 66046 TCCAAGGTGATGGTTTTGCCGGTGAGTGTCTTTACGAAGATTTGCAT 66092 Score = 113 bits (124), Expect = 8e-20 Identities = 161/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 || || || || || | || | ||| || || || |||||||||||||||||||| || Sbjct 65410 CCACCACGGAGACGGAGGACGAGGTGAAGAGTTGATTCTTTTTGGATGTTATAATCCGAA 65469 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 || || | |||||||| || ||||| || ||||| || | | ||| || || || || Sbjct 65470 AGAGTACGACCATCTTCCAATTGCTTACCAGCGAAAATCAAACGTTGCTGATCTGGAGGG 65529 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414 || || || || |||||||| || | || || || ||||| || | |||||| || Sbjct 65530 ATACCCTCTTTATCTTGAATTTTGGTTTTAACCTGATCAATGGTATCAGATGATTCGACC 65589 Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 || | ||| || || || || || || || || || || || ||||| Sbjct 65590 TCAAGGGTAATCGTCTTACCAGTAAGTGTTTTTACAAAAATTTGCAT 65636 >seq218 Length=131350 Score = 149 bits (164), Expect = 1e-30 Identities = 169/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 || || ||||| || | ||| | || || || || |||||||| || |||||||| || Sbjct 41331 CCACCCCGAAGACGAAGTACGAGATGGAGAGTAGATTCTTTTTGAATATTATAATCCGAT 41390 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 | || | |||||||| || || || || ||||| || | | ||| || || || ||| Sbjct 41391 AAAGTACGGCCATCTTCCAATTGTTTACCAGCGAAGATCAAGCGTTGCTGATCTGGAGGA 41450 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414 || |||||||| |||||||||||||| || || || ||||| || | || || ||| Sbjct 41451 ATACCTTCCTTATCTTGAATCTTTGCTTTAACTTGGTCTATGGTATCAGAGGACTCAACT 41510 Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 || | ||| || ||||| || ||||||||||||||||| || ||||| Sbjct 41511 TCAAGGGTAATTGTTTTACCGGTGAGGGTCTTGACGAAAATTTGCAT 41557 Score = 145 bits (160), Expect = 1e-29 Identities = 154/203 (76%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 68259 TGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAGAGTGTCCTCCCATCTTCTAACTGC 68318 || || || || |||||||| || |||||||| || | || | ||||||||| || || Sbjct 42267 TGGAGAGTTGATTCTTTTTGAATATTATAATCTGACAAAGTACGCCCATCTTCCAATTGT 42326 Query 68319 TTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGAATCTTT 68378 || || ||||| || | | |||||| || || ||||| |||||||| |||||||||||| Sbjct 42327 TTACCAGCGAAGATTAAGCGTTGTTGATCTGGAGGAATTCCTTCCTTATCTTGAATCTTT 42386 Query 68379 GCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGTTTTTCCCGTG 68438 || || || || || || || || || ||||| | ||| |||||||| || || Sbjct 42387 GCTTTAACTTGATCAATAGTATCATTGGACTCGACTTCAAGGGTAATGGTTTTCCCAGTA 42446 Query 68439 AGGGTCTTGACGAATATCTGCAT 68461 ||||||||||||||||| ||||| Sbjct 42447 AGGGTCTTGACGAATATTTGCAT 42469 Score = 136 bits (150), Expect = 7e-27 Identities = 152/203 (75%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 68259 TGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAGAGTGTCCTCCCATCTTCTAACTGC 68318 || || ||||| |||||||| |||||||| || || | ||| | ||||||||||| || Sbjct 42039 TGGAGAGTGGATTCTTTTTGAATGTTATAGTCTGACAATGTACGACCATCTTCTAATTGT 42098 Query 68319 TTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGAATCTTT 68378 || || ||||| || | | |||||| || || || || ||||| || |||||||||||| Sbjct 42099 TTACCAGCGAAGATCAAGCGTTGTTGATCTGGGGGGATACCTTCTTTATCTTGAATCTTT 42158 Query 68379 GCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGTTTTTCCCGTG 68438 || || || || ||||| || | || |||||||| | ||||| ||||| || || Sbjct 42159 GCTTTAACTTGGTCTATGGTATCAGAGGACTCTACTTCAAGAGTGATTGTTTTACCGGTC 42218 Query 68439 AGGGTCTTGACGAATATCTGCAT 68461 || || || ||||| || ||||| Sbjct 42219 AGCGTTTTAACGAAAATTTGCAT 42241 Score = 127 bits (140), Expect = 4e-24 Identities = 150/203 (74%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 68259 TGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAGAGTGTCCTCCCATCTTCTAACTGC 68318 || || || || || ||||| || ||||| || || | || | |||||||| || || Sbjct 41583 TGGAGAGTTGATTCCTTTTGAATATTATAGTCCGATAAAGTACGGCCATCTTCCAATTGT 41642 Query 68319 TTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGAATCTTT 68378 || |||||||| || | | |||||| || || || || |||||||| |||||||||||| Sbjct 41643 TTACCGGCGAAGATCAAGCGTTGTTGATCTGGGGGGATACCTTCCTTATCTTGAATCTTT 41702 Query 68379 GCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGTTTTTCCCGTG 68438 || || || || ||||| || | || || ||||| | || || ||||| || ||| Sbjct 41703 GCTTTAACTTGATCTATGGTATCAGAGGACTCGACTTCAAGAGTAATTGTTTTACCGGTG 41762 Query 68439 AGGGTCTTGACGAATATCTGCAT 68461 || ||||||||||| || ||||| Sbjct 41763 AGAGTCTTGACGAAAATTTGCAT 41785 Score = 127 bits (140), Expect = 4e-24 Identities = 150/203 (74%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 68259 TGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAGAGTGTCCTCCCATCTTCTAACTGC 68318 || || || || |||||||| || |||||||| || | || | ||||||||||| || Sbjct 41811 TGGAGAGTTGATTCTTTTTGAATATTATAATCTGACAACGTACGACCATCTTCTAATTGT 41870 Query 68319 TTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGAATCTTT 68378 || || ||||| || | | |||||| || || || || ||||| || ||||||||||| Sbjct 41871 TTACCAGCGAAGATCAAGCGTTGTTGATCTGGAGGGATACCTTCTTTATCTTGAATCTTC 41930 Query 68379 GCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGTTTTTCCCGTG 68438 | || || || ||||| || | || || ||||| | || || ||||| || ||| Sbjct 41931 GTTTTTACTTGATCTATGGTATCAGAGGACTCGACTTCAAGAGTAATTGTTTTACCGGTG 41990 Query 68439 AGGGTCTTGACGAATATCTGCAT 68461 |||||||||||||| || ||||| Sbjct 41991 AGGGTCTTGACGAAAATTTGCAT 42013 >seq575 Length=50698 Score = 143 bits (158), Expect = 5e-29 Identities = 170/228 (75%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 || ||||| | || | ||||||||||| || || |||||||| || || |||||||| Sbjct 22910 CCACCGCGTAAACGAAGTACCAAGTGTAATGTTGATTCTTTTTGAATATTGTAATCGGAA 22969 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 |||| | |||||||||||||| || || || ||||| | | |||||| || || || Sbjct 22970 AGTGAACGTCCATCTTCTAACTGTTTACCAGCAAATATTAAACGTTGTTGATCCGGGGGG 23029 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCT-GATTCTAC 68413 || ||||| || |||||||| ||| | ||||| |||||||| || ||| ||| || Sbjct 23030 ATTCCTTCTTTATCTTGAATTTTTTCTTTGACTTTATCGATGGTATC-GCTACTTTCAAC 23088 Query 68414 TTCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 ||| || || |||||||| || || || || || || || || ||||| Sbjct 23089 TTCTAAAGTAATGGTTTTACCAGTAAGTGTTTTAACAAAAATTTGCAT 23136 >seq1465 Length=43607 Score = 132 bits (146), Expect = 9e-26 Identities = 151/203 (74%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 68259 TGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAGAGTGTCCTCCCATCTTCTAACTGC 68318 || || || ||||| |||||||| || ||||| || | || | |||||||| || || Sbjct 26810 TGGAGAGTTGACTCCTTTTGGATATTGTAATCTGACAAGGTACGTCCATCTTCCAATTGT 26869 Query 68319 TTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGAATCTTT 68378 || ||||| || || | | ||| || || || ||||||||||| |||||||||||||| Sbjct 26870 TTACCGGCAAAGATCAAGCGTTGCTGATCCGGGGGAATGCCTTCTTTGTCTTGAATCTTC 26929 Query 68379 GCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGTTTTTCCCGTG 68438 || || || || ||||| |||| || |||||||| | || || ||||| || || Sbjct 26930 GCTTTAACTTGGTCAATGGTATCTGAGGACTCTACTTCAAGAGTAATAGTTTTACCGGTA 26989 Query 68439 AGGGTCTTGACGAATATCTGCAT 68461 || ||||| ||||| || ||||| Sbjct 26990 AGAGTCTTAACGAAAATTTGCAT 27012 Score = 109 bits (120), Expect = 1e-18 Identities = 114/150 (76%), Gaps = 0/150 (0%) Strand=Plus/Plus Query 68312 TAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTG 68371 || ||| || || || || || | ||||||||| || || || || ||||| |||||||| Sbjct 26635 TACCTGTTTGCCAGCAAAAATCAATCTTTGTTGATCTGGAGGGATACCTTCTTTGTCTTG 26694 Query 68372 AATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGTTTT 68431 |||||||| |||||| || || || || | ||||| ||||| | || || ||||| Sbjct 26695 AATCTTTGTCTTGACTTGTTCAATTGTATCAGAAGATTCAACTTCAAGAGTAATAGTTTT 26754 Query 68432 TCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 || ||||||||||| || || |||||||| Sbjct 26755 CCCGGTGAGGGTCTTTACAAAAATCTGCAT 26784 >seq325 Length=113037 Score = 93.3 bits (102), Expect = 8e-14 Identities = 138/193 (72%), Gaps = 2/193 (1%) Strand=Plus/Plus Query 68270 CTCTTTTTGGATGTTATAATCGGAGAGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAA 68329 |||||| ||||| |||||||| | || | | |||||||||| || | || || || Sbjct 80828 CTCTTTCTGGATATTATAATCACTCAAGGTACGCTCATCTTCTAATTGACTTCCAGCAAA 80887 Query 68330 TATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGAATCTTTGCCTTGAC-GG 68388 || | | ||| || || ||||| |||||||||||||| ||||| || || | Sbjct 80888 AATAAAACGTTGACTATCAGGGGGAATTCCTTCCTTGTCTTGGATCTTGCATTTAACTAG 80947 Query 68389 CCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGA 68448 || |||||| || | || ||||| |||||||| | |||||||| || || || || | Sbjct 80948 GCT-GATGGTATCAGACGACTCTACCTCCAAGGTTACCGTTTTTCCGGTTAGTGTTTTTA 81006 Query 68449 CGAATATCTGCAT 68461 | |||| |||||| Sbjct 81007 CAAATACCTGCAT 81019 >seq645 Length=46104 Score = 86.0 bits (94), Expect = 1e-11 Identities = 106/145 (73%), Gaps = 0/145 (0%) Strand=Plus/Plus Query 68233 TTCCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGG 68292 ||||||| || || | | ||| | || | ||| ||||||||||||| | |||||| | Sbjct 29515 TTCCTCCACGTAGTCTAAGTACAAGATGAATTGTGCACTCTTTTTGGATATAATAATCTG 29574 Query 68293 AGAGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTG 68352 | | || | || |||||||| ||| | || || || || || | |||||| || || | Sbjct 29575 ACAAGGTACGTCCTTCTTCTAATTGCGTGCCAGCAAAAATAAGGCGTTGTTGATCAGGAG 29634 Query 68353 GAATGCCTTCCTTGTCTTGAATCTT 68377 |||| ||||| ||||| | |||||| Sbjct 29635 GAATTCCTTCTTTGTCATAAATCTT 29659 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 921493418945120