Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhizophagus_20irregularis_20[genbank_20GCA_5F001593125.1_202016-03- 16] 11,196 sequences; 125,353,551 total letters Query= NC_008725.1 Length=111953 Score E Sequences producing significant alignments: (Bits) Value seq1727 86.0 4e-12 seq256 86.0 4e-12 >seq1727 Length=26445 Score = 86.0 bits (94), Expect = 4e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 21834 ATGCAAATATTTATTAAAACATTAACGGGCAAAACCATTACCGTGGAAACGGAAGCCGCA 21893 || ||||| ||| ||||||| ||| |||||||| ||| || | ||| || ||| | Sbjct 20157 ATACAAATTTTTGTTAAAACTGTAAGTGGCAAAACAATTGCCATTGAAGTTGATGCCTCT 20216 Query 21894 GAAACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAGGGTGTACCTGTAAACCAA 21953 || || || || | || | | |||| |||||||| || ||| ||| || Sbjct 20217 GATACAGTTAAAGAAGTGAAAAACATAATTCAAGATAAAGAAGGCACTCCTCCAAATCAG 20276 Query 21954 CAGAGACTTATCTTTGCTGGCAAACAACTAGAAGATTTAAAAACTATGGCCGATTACAAT 22013 || | | ||||||||||| |||||||| |||||| | | ||| || | |||| ||| Sbjct 20277 CAACGTTTGATCTTTGCTGGTAAACAACTGGAAGATAAACATACTTTGACACATTATAAT 20336 Query 22014 ATTCAGAAGGAATCTACTCTTCATATGGTATTACGTTTACGAGGAGG 22060 ||| | | |||| ||||||||| | || | ||| || |||| || Sbjct 20337 ATTAGGGATAAATCAACTCTTCATCTCGTGCTCCGTCTAAGAGGTGG 20383 >seq256 Length=68436 Score = 86.0 bits (94), Expect = 4e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 21834 ATGCAAATATTTATTAAAACATTAACGGGCAAAACCATTACCGTGGAAACGGAAGCCGCA 21893 |||||||| || | || ||| | || ||||||||||| ||| |||| || || | Sbjct 66092 ATGCAAATCTTCGTAAAGACACTCACCGGCAAAACCATCACCTTGGACGTAGAGTCCTCG 66033 Query 21894 GAAACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAGGGTGTACCTGTAAACCAA 21953 || || | | | | | || |||||| ||||| |||||| | || | |||| Sbjct 66032 GATACCATCGACCAAGTAAAAACCAAAATTCAAGATAAGGAGGGTATCCCCCCAGACCAG 65973 Query 21954 CAGAGACTTATCTTTGCTGGCAAACAACTAGAAGATTTAAAAACTATGGCCGATTACAAT 22013 || | || || || ||||| |||||||| || ||| | ||| | |||| |||||| Sbjct 65972 CAACGTCTCATTTTCGCTGGTAAACAACTTGAGGATGGACGAACCCTTTCCGACTACAAT 65913 Query 22014 ATTCAGAAGGAATCTACTCTTCATATGGTATTACGTTTACGAGGAGG 22060 ||||| || ||||| ||||||||| | || | ||| | || || || Sbjct 65912 ATTCAAAAAGAATCCACTCTTCATCTCGTTCTCCGTCTTCGTGGCGG 65866 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 358075933423384