Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhizophagus_20irregularis_20[genbank_20GCA_5F001593125.1_202016-03- 16] 11,196 sequences; 125,353,551 total letters Query= NC_009333.1 Length=137969 Score E Sequences producing significant alignments: (Bits) Value seq37 96.9 3e-15 >seq37 Length=134598 Score = 96.9 bits (106), Expect = 3e-15 Identities = 150/212 (71%), Gaps = 3/212 (1%) Strand=Plus/Plus Query 20189 TTGTAGATGTGGGCATCTCCCAACGTGTGAATAAACTCCCCGGGTCTAAGACCAGTAACA 20248 || || || || | ||| |||| || |||||||| || || || ||| ||| || ||| Sbjct 88368 TTATATATATGAGTATCACCCATGGTATGAATAAATTCACCAGGACTACAACCCGTTACA 88427 Query 20249 TGAGCAAGCATATAAGTTAAGAGGGAATAGCTGGCAATGTTAAAAGGAACTCCCAAACCC 20308 ||||||| ||||| |||||| | | |||||| ||||||||||| || || || | || Sbjct 88428 TGAGCAATCATATGAGTTAATATAGCATAGCTTGCAATGTTAAATGGTACACCAAGTCCA 88487 Query 20309 ATGTCTCCCGACCTCTGATACAGCTGACAGGA-AAGCTCACCG--TCAGCTACATAAAAT 20365 | || | || || ||||| || |||| || || || || | | |||||| ||| Sbjct 88488 ACATCACATGATCTTTGATAAAGAAGACACGATAATCTTTTCGTATTTGATACATAGAAT 88547 Query 20366 TGACATAACAAGTGACAGGGCGGAAGCGCCAT 20397 || || |||| ||||| || || | ||||| Sbjct 88548 TGGCAAAACATATGACATGGTGGTAATGCCAT 88579 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 441311029876640