Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhizophagus_20irregularis_20[genbank_20GCA_5F001593125.1_202016-03- 16] 11,196 sequences; 125,353,551 total letters Query= NC_009898.1 Length=368683 Score E Sequences producing significant alignments: (Bits) Value seq218 150 4e-31 seq256 147 5e-30 seq575 116 9e-21 seq1465 114 3e-20 seq645 104 6e-17 >seq218 Length=131350 Score = 150 bits (166), Expect = 4e-31 Identities = 163/215 (76%), Gaps = 6/215 (3%) Strand=Plus/Plus Query 288262 AGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCT 288321 ||||||||||| | ||| ||||||||| || |||||||| | | || || || ||| Sbjct 42030 AGTACGAGATGGAGAGTGGATTCTTTTTGAATGTTATAGTCTGACAATGTACGACCATCT 42089 Query 288322 TCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCT---GGGATTCCTTCTTTA 288378 ||||||||||| || |||||||||| || ||||| |||| ||||| ||||||||| Sbjct 42090 TCTAATTGTTTACCAGCGAAGATCAAGCGTTGTTG---ATCTGGGGGGATACCTTCTTTA 42146 Query 288379 TCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATC 288438 || || || || ||||| || | ||||| | ||| || |||||||| || ||||| Sbjct 42147 TCTTGAATCTTTGCTTTAACTTGGTCTATGGTATCAGAGGACTCTACTTCAAGAGTGATT 42206 Query 288439 GTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 || || |||||||| || || ||||| || ||||| Sbjct 42207 GTTTTACCGGTCAGCGTTTTAACGAAAATTTGCAT 42241 Score = 145 bits (160), Expect = 2e-29 Identities = 162/215 (75%), Gaps = 6/215 (3%) Strand=Plus/Plus Query 288262 AGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCT 288321 ||||||||||| | || ||||||||| |||||||| || | | ||| || || ||| Sbjct 41802 AGTACGAGATGGAGAGTTGATTCTTTTTGAATATTATAATCTGACAACGTACGACCATCT 41861 Query 288322 TCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCT---GGGATTCCTTCTTTA 288378 ||||||||||| || |||||||||| || ||||| |||| ||||| ||||||||| Sbjct 41862 TCTAATTGTTTACCAGCGAAGATCAAGCGTTGTTG---ATCTGGAGGGATACCTTCTTTA 41918 Query 288379 TCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATC 288438 || || || |||| ||| || | ||||| | ||| || || ||||| || || || Sbjct 41919 TCTTGAATCTTCGTTTTTACTTGATCTATGGTATCAGAGGACTCGACTTCAAGAGTAATT 41978 Query 288439 GTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 || || ||||| || ||||||||||| || ||||| Sbjct 41979 GTTTTACCGGTGAGGGTCTTGACGAAAATTTGCAT 42013 Score = 138 bits (152), Expect = 3e-27 Identities = 161/216 (75%), Gaps = 6/216 (3%) Strand=Plus/Plus Query 288261 AAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTC 288320 |||||||||||| | || ||| ||||| ||||||||||| | | || || || || Sbjct 41573 AAGTACGAGATGGAGAGTTGATTCCTTTTGAATATTATAGTCCGATAAAGTACGGCCATC 41632 Query 288321 TTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCT---GGGATTCCTTCTTT 288377 ||| |||||||| || |||||||||| || ||||| |||| ||||| ||||| || Sbjct 41633 TTCCAATTGTTTACCGGCGAAGATCAAGCGTTGTTG---ATCTGGGGGGATACCTTCCTT 41689 Query 288378 ATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGAT 288437 ||| || || || ||||| || | ||||| | ||| || || ||||| || || || Sbjct 41690 ATCTTGAATCTTTGCTTTAACTTGATCTATGGTATCAGAGGACTCGACTTCAAGAGTAAT 41749 Query 288438 CGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 || || ||||| |||||||||||||| || ||||| Sbjct 41750 TGTTTTACCGGTGAGAGTCTTGACGAAAATTTGCAT 41785 Score = 136 bits (150), Expect = 9e-27 Identities = 160/215 (74%), Gaps = 6/215 (3%) Strand=Plus/Plus Query 288262 AGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCT 288321 ||||||||||| | || ||||||||| |||||||| || | | || || || ||| Sbjct 42258 AGTACGAGATGGAGAGTTGATTCTTTTTGAATATTATAATCTGACAAAGTACGCCCATCT 42317 Query 288322 TCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCT---GGGATTCCTTCTTTA 288378 || |||||||| || |||||||| | || ||||| |||| || |||||||| ||| Sbjct 42318 TCCAATTGTTTACCAGCGAAGATTAAGCGTTGTTG---ATCTGGAGGAATTCCTTCCTTA 42374 Query 288379 TCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATC 288438 || || || || ||||| || | || |||| ||| | || || ||||| || || || Sbjct 42375 TCTTGAATCTTTGCTTTAACTTGATCAATAGTATCATTGGACTCGACTTCAAGGGTAATG 42434 Query 288439 GTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 || ||||| || || |||||||||||||| ||||| Sbjct 42435 GTTTTCCCAGTAAGGGTCTTGACGAATATTTGCAT 42469 Score = 132 bits (146), Expect = 1e-25 Identities = 170/233 (73%), Gaps = 6/233 (3%) Strand=Plus/Plus Query 288244 TGTCCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCG 288303 || ||||| || || | |||||||||||| | || ||||||||| |||||||| || Sbjct 41328 TGACCACCCCGAAGACGAAGTACGAGATGGAGAGTAGATTCTTTTTGAATATTATAATCC 41387 Query 288304 GCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCT 288363 | | || || || ||||| |||||||| || |||||||||| || || || |||| Sbjct 41388 GATAAAGTACGGCCATCTTCCAATTGTTTACCAGCGAAGATCAAGCGTTGCTG---ATCT 41444 Query 288364 ---GGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGAT 288420 || || ||||| ||||| || || || ||||| || | ||||| | ||| || Sbjct 41445 GGAGGAATACCTTCCTTATCTTGAATCTTTGCTTTAACTTGGTCTATGGTATCAGAGGAC 41504 Query 288421 TCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 || ||||| || || || || || ||||| || ||||||||||| || ||||| Sbjct 41505 TCAACTTCAAGGGTAATTGTTTTACCGGTGAGGGTCTTGACGAAAATTTGCAT 41557 Score = 89.7 bits (98), Expect = 1e-12 Identities = 82/104 (79%), Gaps = 0/104 (0%) Strand=Plus/Plus Query 288370 CCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACTTCG 288429 ||||||||||| |||||||| || || || | || |||| ||| ||||| |||||| Sbjct 42788 CCTTCTTTATCTTGGATTTTTGCCTTGACTTGGTCAATAGTATCTGAAGATTCAACTTCG 42847 Query 288430 AGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 || || || ||||| ||||| |||||||| ||||| || ||||| Sbjct 42848 AGAGTAATGGTCTTGCCGGTAAGAGTCTTTACGAAGATTTGCAT 42891 >seq256 Length=68436 Score = 147 bits (162), Expect = 5e-30 Identities = 177/238 (74%), Gaps = 7/238 (3%) Strand=Plus/Plus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 || ||||| |||| |||||| ||||||| || |||||||| || ||||| || | Sbjct 66094 CCTCCGCGAAGTCGAAGTACTAGATGAAGAGTTGACTCTTTTTGAATGTTATAATCTGAA 66153 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366 || || || |||||||| | |||||| || ||||| || ||||| || || |||||| Sbjct 66154 AGGGTACGACCGTCTTCAAGTTGTTTGCCAGCGAAAATAAGACGTTGCTGG---TCTGGG 66210 Query 288367 ---ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCT 288423 ||||||||||| || || ||||| ||||| || | || |||| ||| ||||| Sbjct 66211 GGAATTCCTTCTTTGTCTTGAATTTTTGCTTTAACTTGGTCAATAGTGTCGGAAGATTCA 66270 Query 288424 ACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCATTA-TGTTA 288480 ||||| || ||||| ||||| ||||| || || || ||||| || ||||| | ||||| Sbjct 66271 ACTTCAAGGGTGATTGTCTTTCCGGTAAGGGTTTTAACGAAGATTTGCATGATTGTTA 66328 Score = 120 bits (132), Expect = 7e-22 Identities = 167/233 (72%), Gaps = 6/233 (3%) Strand=Plus/Plus Query 288244 TGTCCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCG 288303 || ||||| ||||| | || ||||| |||| || |||||||||||| ||||| || Sbjct 65407 TGACCACCACGGAGACGGAGGACGAGGTGAAGAGTTGATTCTTTTTGGATGTTATAATCC 65466 Query 288304 GCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCT 288363 | || || || || ||||| ||||| || || ||||| |||| ||| || || |||| Sbjct 65467 GAAAGAGTACGACCATCTTCCAATTGCTTACCAGCGAAAATCAAACGTTGCTG---ATCT 65523 Query 288364 ---GGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGAT 288420 ||||| || |||||||| || ||||| | ||| || | || || | ||| ||| Sbjct 65524 GGAGGGATACCCTCTTTATCTTGAATTTTGGTTTTAACCTGATCAATGGTATCAGATGAT 65583 Query 288421 TCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 || || || || || |||||||| || || || || || || || || ||||| Sbjct 65584 TCGACCTCAAGGGTAATCGTCTTACCAGTAAGTGTTTTTACAAAAATTTGCAT 65636 >seq575 Length=50698 Score = 116 bits (128), Expect = 9e-21 Identities = 162/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 |||||||| | | |||||| | || | || ||||||||| ||||| || |||| Sbjct 22910 CCACCGCGTAAACGAAGTACCAAGTGTAATGTTGATTCTTTTTGAATATTGTAATCGGAA 22969 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366 || | ||||| |||||||| ||||| || || || || | ||| |||||| ||| Sbjct 22970 AGTGAACGTCCATCTTCTAACTGTTTACCAGCAAATATTAAACGTTGTTGATCCGGGGGG 23029 Query 288367 ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACT 288426 |||||||||||||| || ||||| |||| || || || || | |||||| ||| ||| Sbjct 23030 ATTCCTTCTTTATCTTGAATTTTTTCTTTGACTTTATCGATGGTATCGCTACTTTCAACT 23089 Query 288427 TCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 || | || || || || || || || || || || || || ||||| Sbjct 23090 TCTAAAGTAATGGTTTTACCAGTAAGTGTTTTAACAAAAATTTGCAT 23136 >seq1465 Length=43607 Score = 114 bits (126), Expect = 3e-20 Identities = 155/215 (72%), Gaps = 6/215 (3%) Strand=Plus/Plus Query 288262 AGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCT 288321 || |||||||| | || || ||||||||||| || || | | || ||||| ||| Sbjct 26801 AGCACGAGATGGAGAGTTGACTCCTTTTGGATATTGTAATCTGACAAGGTACGTCCATCT 26860 Query 288322 TCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG---ATTCCTTCTTTA 288378 || |||||||| || || ||||||| || || || ||| ||| || |||||||| Sbjct 26861 TCCAATTGTTTACCGGCAAAGATCAAGCGTTGCTG---ATCCGGGGGAATGCCTTCTTTG 26917 Query 288379 TCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATC 288438 || || || |||||||| || | || || | ||| || |||||||| || || || Sbjct 26918 TCTTGAATCTTCGCTTTAACTTGGTCAATGGTATCTGAGGACTCTACTTCAAGAGTAATA 26977 Query 288439 GTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 || || ||||| |||||||| ||||| || ||||| Sbjct 26978 GTTTTACCGGTAAGAGTCTTAACGAAAATTTGCAT 27012 >seq645 Length=46104 Score = 104 bits (114), Expect = 6e-17 Identities = 133/182 (73%), Gaps = 1/182 (1%) Strand=Plus/Plus Query 288238 CATACATGTCCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTA 288297 || |||| ||| || || ||||||||||| |||||||| |||| ||||||||||||| | Sbjct 29509 CAAACAT-TCCTCCACGTAGTCTAAGTACAAGATGAATTGTGCACTCTTTTTGGATATAA 29567 Query 288298 TAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGA 288357 || || | | || ||||| ||||||||||| | || || || || || || |||||| Sbjct 29568 TAATCTGACAAGGTACGTCCTTCTTCTAATTGCGTGCCAGCAAAAATAAGGCGTTGTTGA 29627 Query 288358 GAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTC 288417 | || ||||||||||| || | || || ||| | || || || | ||| ||| Sbjct 29628 TCAGGAGGAATTCCTTCTTTGTCATAAATCTTACATTTAAGTTTGTCAATTGTATCACTC 29687 Query 288418 GA 288419 || Sbjct 29688 GA 29689 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1179485180050888