Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhizophagus_20irregularis_20[genbank_20GCA_5F001593125.1_202016-03- 16] 11,196 sequences; 125,353,551 total letters Query= NC_010191.2 Length=186713 Score E Sequences producing significant alignments: (Bits) Value seq106 87.8 2e-12 seq370 84.2 3e-11 >seq106 Length=96187 Score = 87.8 bits (96), Expect = 2e-12 Identities = 147/207 (71%), Gaps = 8/207 (4%) Strand=Plus/Plus Query 172799 TTCCCACGGAGAGGGAACACACCGTAGTGATCACGACCAACCACAGAAAGACCAGCAACT 172858 |||||||| || ||||| || || || | ||||||||||| | ||||| || |||||| Sbjct 10173 TTCCCACGAAGCGGGAAAACTCCATAATTGTCACGACCAACTATAGAAAATCCGGCAACT 10232 Query 172859 GCGAGGGTCTTCGCGGAATCACCCTCCGTCACGATGAGCGTACA--CTTTCCAGATTGTG 172916 || | | ||| || ||||| || || || | ||| | ||||| ||| || || | Sbjct 10233 GCCAAAGCCTTTGCAGAATCGCCTTCAGTAAGGATTAAAGTACAATCTTGACATTTTTTA 10292 Query 172917 CCGTCCCCGCCTTGTTCGCATCGTCCAACTTGGGAATACCAGTAATTTTGGACTTG-CGG 172975 ||| || || || || ||||| |||| || | |||||| || ||| | || || | Sbjct 10293 CCG--CCGGCATTATTTGCATCATCCAGTTTAGCAATACCCGTGATTCT--ACCTGTCTT 10348 Query 172976 GC-ACCATCTGTCTTCTTGAGTTCCTT 173001 | |||||| || ||||| |||||||| Sbjct 10349 TCTACCATCGGTTTTCTTTAGTTCCTT 10375 >seq370 Length=116867 Score = 84.2 bits (92), Expect = 3e-11 Identities = 166/244 (68%), Gaps = 4/244 (2%) Strand=Plus/Plus Query 114353 ACGGGATAAAAATTCCTATCGATAACCCTATTTAGATTTTTGGTGACAACCTTTGTGATT 114412 ||||||||| |||| ||| || || |||||| ||| || | ||||| || | ||| Sbjct 19228 ACGGGATAATAATTTTCATCAATGACTTTATTTAAATTCTTTATAACAACTTTAGCAATT 19287 Query 114413 TCATGAAGCTTTTCGTAATCAAAA--CTGCGAGTCTCTTCATTGACATACTTAGGAAGGG 114470 ||||||||||| | |||||||| | ||| | | ||| ||| | ||||| | | Sbjct 19288 TCATGAAGCTTCAAGAAATCAAAAGTTTTCGATTTGGT--ATTAACAAATTTAGGTAATG 19345 Query 114471 CGATTGACGCCAGATTACACACAGAGGTCTCATCCTTATCAGTGTACTCTATAATTTCCG 114530 ||||| || | |||||| || | ||||| |||| || || | |||||| | Sbjct 19346 AAATTGAAGCTAAATTACAAACGGCTACTTCATCGGGTGCAGTATATTCAACAATTTCAG 19405 Query 114531 TACACAAATTTGAACTCTTAATGGTGCCCAAGTTCTTTTGATTTGACTTTGTGTTACACG 114590 |||| ||||| || | | || || || | ||||||||||| || ||| ||||| | Sbjct 19406 TACATAAATTAGAGCATGTTATAGTACCAAGATTCTTTTGATTAGATTTTTCATTACAAG 19465 Query 114591 CATC 114594 ||| Sbjct 19466 AATC 19469 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 597270000363680