Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhizophagus_20irregularis_20[genbank_20GCA_5F001593125.1_202016-03- 16] 11,196 sequences; 125,353,551 total letters Query= NC_010276.1 Length=156179 Score E Sequences producing significant alignments: (Bits) Value seq256 149 6e-31 seq1465 102 8e-17 seq575 102 8e-17 seq218 98.7 1e-15 seq645 89.7 5e-13 seq1647 84.2 2e-11 >seq256 Length=68436 Score = 149 bits (164), Expect = 6e-31 Identities = 172/229 (75%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 64216 ACCGCCGCGCAATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGC 64275 ||| ||||| | || ||| |||||||||| || || |||||||||||||| ||||||| Sbjct 66093 ACCTCCGCGAAGTCGAAGTACTAGATGAAGAGTTGACTCTTTTTGAATGTTATAATCTGA 66152 Query 64276 GACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGG 64335 | ||| || |||||||||| || ||||| || |||| || || |||||||| || || Sbjct 66153 AAGGGTACGACCGTCTTCAAGTTGTTTGCCAGCGAAAATAAGACGTTGCTGGTCTGGGGG 66212 Query 64336 AATTCCTTCTTTTTCTTGTATTTTTTGCTTT-ACAACCTCCACTGTATCACCGGCGTCCA 64394 |||||||||||| ||||| | |||||||||| || || | || || | || | Sbjct 66213 AATTCCTTCTTTGTCTTG-AATTTTTGCTTTAACTTGGTCAATAGTGTCGGAAGATTCAA 66271 Query 64395 CTTCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443 |||| | || | ||||| ||||| | ||||| ||||| |||||||| Sbjct 66272 CTTCAAGGGTGATTGTCTTTCCGGTAAGGGTTTTAACGAAGATTTGCAT 66320 Score = 118 bits (130), Expect = 1e-21 Identities = 154/213 (72%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 64231 AAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTC 64290 |||||| | ||||| || || ||||||||||| ||||| || | | ||| || | || Sbjct 65652 AAGCACCAAATGAAGTGTTGACTCTTTTTGAATATTGTAGTCAGAAAGGGTTCGTCCATC 65711 Query 64291 TTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTC 64350 ||||| || || ||||| ||||||| || ||||| || || ||||| |||||||| || Sbjct 65712 CTCAAGTTGTTTACCGGCGAAAATGAGACGTTGCTGATCTGGGGGAATACCTTCTTTGTC 65771 Query 64351 TTGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGT 64410 ||| || ||| ||||| || | ||||| | || ||||| | ||| | ||| Sbjct 65772 TTGAATCTTTGCTTTTACTTGATCGATGGTATCGGAAGACTCAACTTCCAAAGTAATGGT 65831 Query 64411 CTTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443 || || || | |||||| || ||||||||||| Sbjct 65832 TTTTCCAGTTAGAGTTTTAACAAAAATTTGCAT 65864 Score = 109 bits (120), Expect = 5e-19 Identities = 161/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 64216 ACCGCCGCGCAATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGC 64275 |||||| || | | || || ||||||| || |||||||||||||| ||||| || | Sbjct 65865 ACCGCCACGAAGACGGAGAACGAGATGAAGAGTGGATTCTTTTTGAATATTGTAGTCGGA 65924 Query 64276 GACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGG 64335 | ||| || | || ||||| || || || || ||||||| || |||||||| || || Sbjct 65925 AAGGGTTCGTCCATCCTCAAGTTGTTTACCAGCGAAAATGAGACGTTGCTGGTCTGGGGG 65984 Query 64336 AATTCCTTCTTTTTCTTGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCAC 64395 || || || || ||||| ||||| ||||| || | ||||| || || || Sbjct 65985 GATACCCTCCTTATCTTGAATTTTGGTTTTTACTTGGTCGATGGTATCCGAGGACTCTAC 66044 Query 64396 TTCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443 || | || | ||| |||||||| | || |||||||| |||||||| Sbjct 66045 GTCCAAGGTGATGGTTTTGCCGGTGAGTGTCTTTACGAAGATTTGCAT 66092 Score = 87.8 bits (96), Expect = 2e-12 Identities = 150/215 (70%), Gaps = 6/215 (3%) Strand=Plus/Plus Query 64232 AGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCT 64291 || || || |||| || ||||||||||| ||||| ||||| | | || || | ||| Sbjct 65425 AGGACGAGGTGAAGAGTTGATTCTTTTTGGATGTTATAATCCGAAAGAGTACGACCATCT 65484 Query 64292 TCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCT 64351 || | ||||| || || |||| | || ||||| || ||||| || || ||||| ||| Sbjct 65485 TCCAATTGCTTACCAGCGAAAATCAAACGTTGCTGATCTGGAGGGATACCCTCTTTATCT 65544 Query 64352 TGTATTTTTTGCTTTACAACC---TCCACTGTATCACCGGCGTCCACTTCTACAGTTACG 64408 || | ||||| ||| |||| || | |||||| | || || || | || | Sbjct 65545 TGAA--TTTTGGTTT-TAACCTGATCAATGGTATCAGATGATTCGACCTCAAGGGTAATC 65601 Query 64409 GTCTTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443 ||||| || || | |||||||| ||||||||||| Sbjct 65602 GTCTTACCAGTAAGTGTTTTTACAAAAATTTGCAT 65636 >seq1465 Length=43607 Score = 102 bits (112), Expect = 8e-17 Identities = 152/213 (71%), Gaps = 2/213 (1%) Strand=Plus/Plus Query 64232 AGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCT 64291 ||||| ||||| | || || || ||||| || |||||||||| | ||| || | ||| Sbjct 26801 AGCACGAGATGGAGAGTTGACTCCTTTTGGATATTGTAATCTGACAAGGTACGTCCATCT 26860 Query 64292 TCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCT 64351 || | || || |||||| | || | || ||||| || || ||||| |||||||| ||| Sbjct 26861 TCCAATTGTTTACCGGCAAAGATCAAGCGTTGCTGATCCGGGGGAATGCCTTCTTTGTCT 26920 Query 64352 TGTATTTTTTGCTTTA-CAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGT 64410 || || || |||||| | || | ||||| || || ||||| | ||| | || Sbjct 26921 TGAATCTTC-GCTTTAACTTGGTCAATGGTATCTGAGGACTCTACTTCAAGAGTAATAGT 26979 Query 64411 CTTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443 || ||||| | ||| || |||||||||||||| Sbjct 26980 TTTACCGGTAAGAGTCTTAACGAAAATTTGCAT 27012 >seq575 Length=50698 Score = 102 bits (112), Expect = 8e-17 Identities = 165/236 (70%), Gaps = 1/236 (0%) Strand=Plus/Plus Query 64217 CCGCCGCGCAATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCG 64276 || ||||| || | ||| || | || | || |||||||||||||| |||||||| | Sbjct 22910 CCACCGCGTAAACGAAGTACCAAGTGTAATGTTGATTCTTTTTGAATATTGTAATCGGAA 22969 Query 64277 ACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGA 64336 | | || | ||||| | ||| || || ||| | || | || || || || || || Sbjct 22970 AGTGAACGTCCATCTTCTAACTGTTTACCAGCAAATATTAAACGTTGTTGATCCGGGGGG 23029 Query 64337 ATTCCTTCTTTTTCTTGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACT 64396 ||||||||||| ||||| ||||||| || || || | ||||| | || ||| Sbjct 23030 ATTCCTTCTTTATCTTGAATTTTTTCTTTGACTTTATCGATGGTATCGCTACTTTCAACT 23089 Query 64397 TCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTACGAAAATTTGCAT-TTTAATAA 64451 |||| ||| | ||| || || || | ||||| || ||||||||||| ||||| || Sbjct 23090 TCTAAAGTAATGGTTTTACCAGTAAGTGTTTTAACAAAAATTTGCATGTTTAAAAA 23145 >seq218 Length=131350 Score = 98.7 bits (108), Expect = 1e-15 Identities = 151/213 (71%), Gaps = 2/213 (1%) Strand=Plus/Plus Query 64232 AGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCT 64291 || || ||||| | || ||||||||||||||||| || |||| | || || | ||| Sbjct 42030 AGTACGAGATGGAGAGTGGATTCTTTTTGAATGTTATAGTCTGACAATGTACGACCATCT 42089 Query 64292 TCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCT 64351 || | || || || || | || | || || || || || || || |||||||| ||| Sbjct 42090 TCTAATTGTTTACCAGCGAAGATCAAGCGTTGTTGATCTGGGGGGATACCTTCTTTATCT 42149 Query 64352 TGTATTTTTTGCTTT-ACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGT 64410 || | | |||||||| || || | |||||| || || ||||| | ||| | || Sbjct 42150 TG-AATCTTTGCTTTAACTTGGTCTATGGTATCAGAGGACTCTACTTCAAGAGTGATTGT 42208 Query 64411 CTTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443 || ||||||| ||||| |||||||||||||| Sbjct 42209 TTTACCGGTCAGCGTTTTAACGAAAATTTGCAT 42241 Score = 93.3 bits (102), Expect = 4e-14 Identities = 150/213 (70%), Gaps = 2/213 (1%) Strand=Plus/Plus Query 64232 AGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCT 64291 || || ||||| | || |||||||||||||| || ||||||| | || ||| | ||| Sbjct 42258 AGTACGAGATGGAGAGTTGATTCTTTTTGAATATTATAATCTGACAAAGTACGCCCATCT 42317 Query 64292 TCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCT 64351 || | || || || || | || | || || || || |||||||||||||| || ||| Sbjct 42318 TCCAATTGTTTACCAGCGAAGATTAAGCGTTGTTGATCTGGAGGAATTCCTTCCTTATCT 42377 Query 64352 TGTATTTTTTGCTTT-ACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGT 64410 || | | |||||||| || || | |||||| || || ||||| | || | ||| Sbjct 42378 TG-AATCTTTGCTTTAACTTGATCAATAGTATCATTGGACTCGACTTCAAGGGTAATGGT 42436 Query 64411 CTTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443 || || || | || || ||||| |||||||| Sbjct 42437 TTTCCCAGTAAGGGTCTTGACGAATATTTGCAT 42469 Score = 91.5 bits (100), Expect = 1e-13 Identities = 150/214 (70%), Gaps = 2/214 (1%) Strand=Plus/Plus Query 64231 AAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTC 64290 ||| || ||||| | || |||||||||||||| || ||||| | | || || | || Sbjct 41345 AAGTACGAGATGGAGAGTAGATTCTTTTTGAATATTATAATCCGATAAAGTACGGCCATC 41404 Query 64291 TTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTC 64350 ||| | || || || || | || | || ||||| || |||||||| ||||| || || Sbjct 41405 TTCCAATTGTTTACCAGCGAAGATCAAGCGTTGCTGATCTGGAGGAATACCTTCCTTATC 41464 Query 64351 TTGTATTTTTTGCTTT-ACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGG 64409 ||| | | |||||||| || || | |||||| || || ||||| | || | | Sbjct 41465 TTG-AATCTTTGCTTTAACTTGGTCTATGGTATCAGAGGACTCAACTTCAAGGGTAATTG 41523 Query 64410 TCTTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443 | || ||||| | || || |||||||||||||| Sbjct 41524 TTTTACCGGTGAGGGTCTTGACGAAAATTTGCAT 41557 Score = 89.7 bits (98), Expect = 5e-13 Identities = 147/212 (69%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 64232 AGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCT 64291 || || ||||| | || |||||||||||||| || ||||||| | || || | ||| Sbjct 41802 AGTACGAGATGGAGAGTTGATTCTTTTTGAATATTATAATCTGACAACGTACGACCATCT 41861 Query 64292 TCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCT 64351 || | || || || || | || | || || || || ||||| || |||||||| ||| Sbjct 41862 TCTAATTGTTTACCAGCGAAGATCAAGCGTTGTTGATCTGGAGGGATACCTTCTTTATCT 41921 Query 64352 TGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTC 64411 || || || ||||| || | |||||| || || ||||| | ||| | || Sbjct 41922 TGAATCTTCGTTTTTACTTGATCTATGGTATCAGAGGACTCGACTTCAAGAGTAATTGTT 41981 Query 64412 TTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443 || ||||| | || || |||||||||||||| Sbjct 41982 TTACCGGTGAGGGTCTTGACGAAAATTTGCAT 42013 Score = 82.4 bits (90), Expect = 8e-11 Identities = 148/214 (69%), Gaps = 2/214 (1%) Strand=Plus/Plus Query 64231 AAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTC 64290 ||| || ||||| | || ||||| |||||||| || || || | | || || | || Sbjct 41573 AAGTACGAGATGGAGAGTTGATTCCTTTTGAATATTATAGTCCGATAAAGTACGGCCATC 41632 Query 64291 TTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTC 64350 ||| | || || ||||| | || | || || || || || || || ||||| || || Sbjct 41633 TTCCAATTGTTTACCGGCGAAGATCAAGCGTTGTTGATCTGGGGGGATACCTTCCTTATC 41692 Query 64351 TTGTATTTTTTGCTTTA-CAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGG 64409 ||| || ||| |||||| | || | |||||| || || ||||| | ||| | | Sbjct 41693 TTGAATCTTT-GCTTTAACTTGATCTATGGTATCAGAGGACTCGACTTCAAGAGTAATTG 41751 Query 64410 TCTTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443 | || ||||| | ||| || |||||||||||||| Sbjct 41752 TTTTACCGGTGAGAGTCTTGACGAAAATTTGCAT 41785 >seq645 Length=46104 Score = 89.7 bits (98), Expect = 5e-13 Identities = 100/134 (75%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 64217 CCGCCGCGCAATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCG 64276 || || || | |||||| || |||||||| || | |||||||| || | ||||||| Sbjct 29517 CCTCCACGTAGTCTAAGTACAAGATGAATTGTGCACTCTTTTTGGATATAATAATCTGAC 29576 Query 64277 ACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGA 64336 | ||| || | ||||| | ||| |||| ||| |||| || || || || || |||||| Sbjct 29577 AAGGTACGTCCTTCTTCTAATTGCGTGCCAGCAAAAATAAGGCGTTGTTGATCAGGAGGA 29636 Query 64337 ATTCCTTCTTTTTC 64350 ||||||||||| || Sbjct 29637 ATTCCTTCTTTGTC 29650 >seq1647 Length=14880 Score = 84.2 bits (92), Expect = 2e-11 Identities = 118/166 (71%), Gaps = 0/166 (0%) Strand=Plus/Minus Query 154590 GCCAAGTTGCAAACGGCAATTTCTTCAGAACTACTGTATTGCACAATTTCTGCGCACAAA 154649 |||||||| || || |||| ||| || | || |||| ||||| |||| |||||| Sbjct 3721 GCCAAGTTACATACAGCAACTTCATCCGGGCTCGAATATTCAACAATCTCTGTACACAAA 3662 Query 154650 TTACTGCATCGAATGGTGCCCAGGTTTTTCTGATTCGATTTGATGTTGCATGCGTCTTTG 154709 ||||| ||| || || || || |||| ||||| ||||| || || | |||||| Sbjct 3661 TTACTACATTTGATTGTACCAAGATTTTGTTGATTAGATTTACGATTACAAGAATCTTTG 3602 Query 154710 TACAAAATGTACGGGGTGCCCGTTTCCACTTGGGTTTCAATAATTG 154755 || | || || || || |||||||| | |||| ||||| ||||| Sbjct 3601 TAGAGCATATATGGTGTACCCGTTTCGATCTGGGATTCAAGAATTG 3556 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 499574874710240