Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhizophagus_20irregularis_20[genbank_20GCA_5F001593125.1_202016-03- 16] 11,196 sequences; 125,353,551 total letters Query= NC_011345.1 Length=155122 Score E Sequences producing significant alignments: (Bits) Value seq256 129 6e-25 seq1465 107 2e-18 seq575 102 8e-17 seq218 102 8e-17 seq1647 89.7 5e-13 seq1592 86.0 6e-12 >seq256 Length=68436 Score = 129 bits (142), Expect = 6e-25 Identities = 167/228 (73%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447 || || || | ||| | || ||||| | ||||||| |||||||| |||||||| Sbjct 65638 CCACCACGAAGACGAAGCACCAAATGAAGTGTTGACTCTTTTTGAATATTGTAGTCAGAA 65697 Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507 | || || ||||| ||||||||||||| | || ||||| || || || || || Sbjct 65698 AGGGTTCGTCCATCCTCAAGTTGTTTACCGGCGAAAATGAGACGTTGCTGATCTGGGGGA 65757 Query 138508 ATACCTTCTTTGTCGGTGATTTTTTG-TTTTAATTGTTCCACGGTGTCGGTCGACTCCAC 138566 |||||||||||||| ||| | |||| ||||| ||| || | ||| |||| ||||| || Sbjct 65758 ATACCTTCTTTGTC-TTGAATCTTTGCTTTTACTTGATCGATGGTATCGGAAGACTCAAC 65816 Query 138567 CTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 || | || | ||||| ||||| |||||||| |||||||| ||||| Sbjct 65817 TTCCAAAGTAATGGTTTTTCCAGTTAGAGTTTTAACAAAAATTTGCAT 65864 Score = 98.7 bits (108), Expect = 1e-15 Identities = 150/211 (71%), Gaps = 2/211 (1%) Strand=Plus/Plus Query 138406 ACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCG 138465 |||| ||| | ||||||| ||||||||||| || || | ||||| ||| || Sbjct 66112 ACTAGATGAAGAGTTGACTCTTTTTGAATGTTATAATCTGAAAGGGTACGACCGTCTTCA 66171 Query 138466 AGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTG 138525 |||||||| || | | || ||||| || ||||| || || || ||||||||||| || Sbjct 66172 AGTTGTTTGCCAGCGAAAATAAGACGTTGCTGGTCTGGGGGAATTCCTTCTTTGTC-TTG 66230 Query 138526 ATTTTTTGTTTTAA-TTGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTT 138584 | |||||| ||||| ||| || | ||||||| || || || || | || | || || Sbjct 66231 AATTTTTGCTTTAACTTGGTCAATAGTGTCGGAAGATTCAACTTCAAGGGTGATTGTCTT 66290 Query 138585 ACCAGTCAGAGTTTTTACAAAAATCTGCATG 138615 || || || ||||| || || || |||||| Sbjct 66291 TCCGGTAAGGGTTTTAACGAAGATTTGCATG 66321 Score = 96.9 bits (106), Expect = 3e-15 Identities = 141/197 (72%), Gaps = 2/197 (1%) Strand=Plus/Plus Query 138419 TTGACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGG 138478 |||| || ||||| ||||| || || | |||||| || || | ||| ||||| | Sbjct 65441 TTGATTCTTTTTGGATGTTATAATCCGAAAGAGTACGACCATCTTCCAATTGCTTACCAG 65500 Query 138479 AATAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTA 138538 | || | ||| || || || ||||| ||||| ||||| || ||| |||| |||||| Sbjct 65501 CGAAAATCAAACGTTGCTGATCTGGAGGGATACCCTCTTTATCT-TGAATTTTGGTTTTA 65559 Query 138539 AT-TGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTT 138597 | || || | ||| || | || || ||||| | || | ||| |||||||| || ||| Sbjct 65560 ACCTGATCAATGGTATCAGATGATTCGACCTCAAGGGTAATCGTCTTACCAGTAAGTGTT 65619 Query 138598 TTTACAAAAATCTGCAT 138614 ||||||||||| ||||| Sbjct 65620 TTTACAAAAATTTGCAT 65636 Score = 93.3 bits (102), Expect = 4e-14 Identities = 159/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447 ||||| || | ||| | ||| | ||| | | || || |||||||| ||||||||| Sbjct 65866 CCGCCACGAAGACGGAGAACGAGATGAAGAGTGGATTCTTTTTGAATATTGTAGTCGGAA 65925 Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507 | || || ||||| ||||||||||| | | || ||||| || ||||| || || Sbjct 65926 AGGGTTCGTCCATCCTCAAGTTGTTTACCAGCGAAAATGAGACGTTGCTGGTCTGGGGGG 65985 Query 138508 ATACCTTCTTTGTCGGTGATTTTTTG-TTTTAATTGTTCCACGGTGTCGGTCGACTCCAC 138566 ||||| || || || ||| |||| | ||||| ||| || | ||| || | ||||| || Sbjct 65986 ATACCCTCCTTATC-TTGAATTTTGGTTTTTACTTGGTCGATGGTATCCGAGGACTCTAC 66044 Query 138567 CTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 || | || | ||||| || || || || ||||| || || ||||| Sbjct 66045 GTCCAAGGTGATGGTTTTGCCGGTGAGTGTCTTTACGAAGATTTGCAT 66092 >seq1465 Length=43607 Score = 107 bits (118), Expect = 2e-18 Identities = 162/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447 || |||| ||||| | || | ||| | ||||||||||||| || ||||| || | Sbjct 26786 CCACCTCTTAAACGGAGCACGAGATGGAGAGTTGACTCCTTTTGGATATTGTAATCTGAC 26845 Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507 | ||||| || || | ||||||||||| | |||| | || || || ||||| || Sbjct 26846 AAGGTACGTCCATCTTCCAATTGTTTACCGGCAAAGATCAAGCGTTGCTGATCCGGGGGA 26905 Query 138508 ATACCTTCTTTGTCGGTGATTTTTTGTTTTAA-TTGTTCCACGGTGTCGGTCGACTCCAC 138566 || ||||||||||| ||| | || | ||||| ||| || | ||| || | ||||| || Sbjct 26906 ATGCCTTCTTTGTC-TTGAATCTTCGCTTTAACTTGGTCAATGGTATCTGAGGACTCTAC 26964 Query 138567 CTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 || | || | |||||||| || ||||| || || ||||| ||||| Sbjct 26965 TTCAAGAGTAATAGTTTTACCGGTAAGAGTCTTAACGAAAATTTGCAT 27012 >seq575 Length=50698 Score = 102 bits (112), Expect = 8e-17 Identities = 160/229 (70%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 138387 GCCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCT 138446 ||| || || ||||| | || || |||| |||| || |||||||| ||||| ||| Sbjct 22909 GCCACCGCGTAAACGAAGTACCAAGTGTAATGTTGATTCTTTTTGAATATTGTAATCGGA 22968 Query 138447 CATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGG 138506 | | ||| || || | |||||||| | | | |||| ||| ||||| ||||| || Sbjct 22969 AAGTGAACGTCCATCTTCTAACTGTTTACCAGCAAATATTAAACGTTGTTGATCCGGGGG 23028 Query 138507 TATACCTTCTTTGTCGGTGATTTTTTGTTTTAATTGTTCCACGGTGTCGGTCGACTCCAC 138566 || |||||||| || ||||||| ||| | || || | ||| ||| | || || Sbjct 23029 GATTCCTTCTTTATCTTGAATTTTTTCTTTGACTTTATCGATGGTATCGCTACTTTCAAC 23088 Query 138567 CTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCATG 138615 || | || | ||||||||||| || ||||| |||||||| |||||| Sbjct 23089 TTCTAAAGTAATGGTTTTACCAGTAAGTGTTTTAACAAAAATTTGCATG 23137 >seq218 Length=131350 Score = 102 bits (112), Expect = 8e-17 Identities = 161/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447 || |||| ||||| | || | ||| | |||| ||||||||||| || ||||| Sbjct 41559 CCACCTCTTAAACGAAGTACGAGATGGAGAGTTGATTCCTTTTGAATATTATAGTCCGAT 41618 Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507 | |||||| || || | ||||||||||| |||| | || ||||| || || || Sbjct 41619 AAAGTACGGCCATCTTCCAATTGTTTACCGGCGAAGATCAAGCGTTGTTGATCTGGGGGG 41678 Query 138508 ATACCTTCTTTGTCGGTGATTTTTTGTTTTAA-TTGTTCCACGGTGTCGGTCGACTCCAC 138566 |||||||| || || ||| | |||| ||||| ||| || | ||| || | ||||| || Sbjct 41679 ATACCTTCCTTATC-TTGAATCTTTGCTTTAACTTGATCTATGGTATCAGAGGACTCGAC 41737 Query 138567 CTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 || | || | |||||||| || ||||| || || ||||| ||||| Sbjct 41738 TTCAAGAGTAATTGTTTTACCGGTGAGAGTCTTGACGAAAATTTGCAT 41785 Score = 102 bits (112), Expect = 8e-17 Identities = 161/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447 || |||| ||||| | || | ||| | | || || ||||||||||| ||||| | Sbjct 42015 CCACCTCTTAAACGGAGTACGAGATGGAGAGTGGATTCTTTTTGAATGTTATAGTCTGAC 42074 Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507 | ||||| || || | ||||||||| | |||| | || ||||| || || || Sbjct 42075 AATGTACGACCATCTTCTAATTGTTTACCAGCGAAGATCAAGCGTTGTTGATCTGGGGGG 42134 Query 138508 ATACCTTCTTTGTCGGTGATTTTTTGTTTTAA-TTGTTCCACGGTGTCGGTCGACTCCAC 138566 ||||||||||| || ||| | |||| ||||| ||| || | ||| || | ||||| || Sbjct 42135 ATACCTTCTTTATC-TTGAATCTTTGCTTTAACTTGGTCTATGGTATCAGAGGACTCTAC 42193 Query 138567 CTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 || | || | |||||||| ||||| ||||| || ||||| ||||| Sbjct 42194 TTCAAGAGTGATTGTTTTACCGGTCAGCGTTTTAACGAAAATTTGCAT 42241 Score = 89.7 bits (98), Expect = 5e-13 Identities = 158/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447 || |||| ||||| | || | ||| | |||| || |||||||| || || || | Sbjct 41787 CCACCTCTTAAACGGAGTACGAGATGGAGAGTTGATTCTTTTTGAATATTATAATCTGAC 41846 Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507 | ||||| || || | ||||||||| | |||| | || ||||| || ||||| Sbjct 41847 AACGTACGACCATCTTCTAATTGTTTACCAGCGAAGATCAAGCGTTGTTGATCTGGAGGG 41906 Query 138508 ATACCTTCTTTGTCGGTGATTTTTTG-TTTTAATTGTTCCACGGTGTCGGTCGACTCCAC 138566 ||||||||||| || ||| | || | ||||| ||| || | ||| || | ||||| || Sbjct 41907 ATACCTTCTTTATC-TTGAATCTTCGTTTTTACTTGATCTATGGTATCAGAGGACTCGAC 41965 Query 138567 CTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 || | || | |||||||| || || || || || ||||| ||||| Sbjct 41966 TTCAAGAGTAATTGTTTTACCGGTGAGGGTCTTGACGAAAATTTGCAT 42013 >seq1647 Length=14880 Score = 89.7 bits (98), Expect = 5e-13 Identities = 135/189 (71%), Gaps = 6/189 (3%) Strand=Plus/Minus Query 154341 GCGTGCGTAAACAGTTTTTGGCTCATCATGCGGTACGTTTCGATGGCGTCTTCGATATCA 154400 ||||| ||||| | |||| ||||| ||| ||||| || || ||||||||||| Sbjct 2912 GCGTGAGTAAAGAACTTTTCTGACATCAGATTGTAAGTTTCAATAGCAGCTTCGATATCA 2853 Query 154401 TCGCCGTGAATGCCGAGCGCGACGCGCATGAGCATGTGCTGCGGACGTTCGGCGACTCTA 154460 || |||||||| || | ||| |||||||| ||||| || || ||||| ||||| ||| Sbjct 2852 TCTCCGTGAATCCCAACCGCTACGCGCATAAGCATATGTTGGGGACGCTCGGCAACT--- 2796 Query 154461 TTGTCA-ATCTTC--AAGAGATATCCATTTTCGAGGGTTTTGTAACCGAAATACTTGTAT 154517 || || | ||| || ||||| |||| || ||||| | || ||||| || ||| Sbjct 2795 TTTCCACCTATTCGTAAAAGATAAGATCTTTCAAGAGTTTTAAATCCAAAATAATTATAT 2736 Query 154518 TCAAAATCT 154526 | | ||||| Sbjct 2735 TTATAATCT 2727 >seq1592 Length=32188 Score = 86.0 bits (94), Expect = 6e-12 Identities = 121/170 (71%), Gaps = 0/170 (0%) Strand=Plus/Plus Query 138433 ATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGC 138492 || ||||| || || | |||||| || || ||||| ||||| | | | |||| | Sbjct 12452 ATATTGTAATCACTTAAAGTACGGCCATCTTCAAGTTGCTTACCAGCAAAAATTAATCTT 12511 Query 138493 TGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTAATTGTTCCACGGTG 138552 ||||| || || |||||||||||||| || || |||||| ||||||||| || | || Sbjct 12512 TGTTGATCTGGTGGTATACCTTCTTTTTCAGTAATTTTTGTTTTTAATTGATCAATTGTA 12571 Query 138553 TCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTAC 138602 || | |||| || || | || || ||||| ||||| | ||||| || Sbjct 12572 TCACTAAACTCGACTTCAATTGTTAGAGTTTTTCCAGTTAATGTTTTAAC 12621 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 496192948077120