Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhizophagus_20irregularis_20[genbank_20GCA_5F001593125.1_202016-03- 16] 11,196 sequences; 125,353,551 total letters Query= NC_011423.1 Length=111724 Score E Sequences producing significant alignments: (Bits) Value seq575 150 1e-31 seq256 107 1e-18 seq218 102 6e-17 >seq575 Length=50698 Score = 150 bits (166), Expect = 1e-31 Identities = 184/248 (74%), Gaps = 5/248 (2%) Strand=Plus/Plus Query 14949 GCCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCT 15008 |||||| || || | | || || || | || || |||||||| || ||||||||| Sbjct 22909 GCCACCGCGTAAACGAAGTACCAAGTGTAATGTTGATTCTTTTTGAATATTGTAATCG-- 22966 Query 15009 GAGAATTCTCG--CGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTT 15066 || | | || | |||||||| ||||| ||||| |||| ||||| ||||| || Sbjct 22967 GAAAGTGAACGTCCATCTTCTAACTGTTTACCAGCAAATATTAAACGTTGTTGATCCGGG 23026 Query 15067 GGAATTCCTTCCTTGTCACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCT 15126 || |||||||| || || |||||| ||| || | || || ||||||||| |||| Sbjct 23027 GGGATTCCTTCTTTATCTTGAATTTTTTCTTTGACTTTATCGATGGTATCGCTACTTTCA 23086 Query 15127 ACGTCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATATTTGAAATA 15186 || ||||| |||||||||||||| || || ||||| |||||||||||||| ||| ||| | Sbjct 23087 ACTTCTAAAGTAATGGTTTTACCAGTAAGTGTTTTAACAAAAATTTGCATGTTT-AAAAA 23145 Query 15187 AATTTTTT 15194 ||||| || Sbjct 23146 AATTTATT 23153 >seq256 Length=68436 Score = 107 bits (118), Expect = 1e-18 Identities = 146/204 (72%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 14974 TGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCGCGTCTTCTAATTGT 15033 ||||| || || |||||||| ||||| ||||| ||| | | | ||||| ||||| Sbjct 65434 TGAAGAGTTGATTCTTTTTGGATGTTATAATCCGAAAGAGTACGACCATCTTCCAATTGC 65493 Query 15034 TTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACAAATTTTG 15093 || |||||| | |||||||| || || || || || || || || || ||||||| Sbjct 65494 TTACCAGCGAAAATCAAACGTTGCTGATCTGGAGGGATACCCTCTTTATCTTGAATTTTG 65553 Query 15094 CTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTTACCTGTC 15153 |||| || || || ||||| ||| || || | |||||| || ||||| || Sbjct 65554 GTTTTAACCTGATCAATGGTATCAGATGATTCGACCTCAAGGGTAATCGTCTTACCAGTA 65613 Query 15154 AGAGTTTTTACAAAAATTTGCATA 15177 || ||||||||||||||||||||| Sbjct 65614 AGTGTTTTTACAAAAATTTGCATA 65637 Score = 107 bits (118), Expect = 1e-18 Identities = 152/211 (72%), Gaps = 2/211 (1%) Strand=Plus/Plus Query 14968 ACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCGCGTCTTCT 15027 || |||||||| || || |||||||| || ||||| || || ||| | || || Sbjct 65656 ACCAAATGAAGTGTTGACTCTTTTTGAATATTGTAGTCAGAAAGGGTTCGTCCATCCTCA 65715 Query 15028 AATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACAA 15087 | |||||| || ||| | || | ||| || || || ||||| ||||| ||||| | Sbjct 65716 AGTTGTTTACCGGCGAAAATGAGACGTTGCTGATCTGGGGGAATACCTTCTTTGTCTTGA 65775 Query 15088 AT-TTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTT 15146 || ||||||||| || || || |||||| | || || || || ||||||||||| Sbjct 65776 ATCTTTGCTTTT-ACTTGATCGATGGTATCGGAAGACTCAACTTCCAAAGTAATGGTTTT 65834 Query 15147 ACCTGTCAGAGTTTTTACAAAAATTTGCATA 15177 || || |||||||| ||||||||||||||| Sbjct 65835 TCCAGTTAGAGTTTTAACAAAAATTTGCATA 65865 Score = 107 bits (118), Expect = 1e-18 Identities = 149/209 (71%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 14968 ACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCGCGTCTTCT 15027 |||| |||||| || || |||||||| ||||| ||||| || | | ||||||| Sbjct 66112 ACTAGATGAAGAGTTGACTCTTTTTGAATGTTATAATCTGAAAGGGTACGACCGTCTTCA 66171 Query 15028 AATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACAA 15087 | ||||||||||||| | || | ||| || ||||| ||||||||||| ||||| | Sbjct 66172 AGTTGTTTGCCAGCGAAAATAAGACGTTGCTGGTCTGGGGGAATTCCTTCTTTGTCTTGA 66231 Query 15088 ATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTTA 15147 ||||| ||| || || ||||| ||| | ||| || || | ||| || || || Sbjct 66232 ATTTTTGCTTTAACTTGGTCAATAGTGTCGGAAGATTCAACTTCAAGGGTGATTGTCTTT 66291 Query 15148 CCTGTCAGAGTTTTTACAAAAATTTGCAT 15176 || || || ||||| || || |||||||| Sbjct 66292 CCGGTAAGGGTTTTAACGAAGATTTGCAT 66320 >seq218 Length=131350 Score = 102 bits (112), Expect = 6e-17 Identities = 164/231 (71%), Gaps = 6/231 (3%) Strand=Plus/Plus Query 14950 CCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTG 15009 ||||||| || | | || | ||| || || || |||||||| ||||| || || || Sbjct 42015 CCACCTCTTAAACGGAGTACGAGATGGAGAGTGGATTCTTTTTGAATGTTATAGTC--TG 42072 Query 15010 AGAATTCTCG--CGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTG 15067 | ||| || | |||||||||||||| |||||| | ||||| || ||||| || | Sbjct 42073 ACAATGTACGACCATCTTCTAATTGTTTACCAGCGAAGATCAAGCGTTGTTGATCTGGGG 42132 Query 15068 GAATTCCTTCCTTGTCACAAAT-TTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCT 15126 | || ||||| || || ||| ||||| ||| || ||||| ||||| ||| Sbjct 42133 GGATACCTTCTTTATCTTGAATCTTTGC-TTTAACTTGGTCTATGGTATCAGAGGACTCT 42191 Query 15127 ACGTCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATA 15177 || || | || || |||||||| ||||| ||||| || |||||||||||| Sbjct 42192 ACTTCAAGAGTGATTGTTTTACCGGTCAGCGTTTTAACGAAAATTTGCATA 42242 Score = 102 bits (112), Expect = 6e-17 Identities = 164/231 (71%), Gaps = 6/231 (3%) Strand=Plus/Plus Query 14950 CCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTG 15009 ||||||| || | | || | ||| || || || |||||||| || || ||||| || Sbjct 42243 CCACCTCTTAAACGGAGTACGAGATGGAGAGTTGATTCTTTTTGAATATTATAATC--TG 42300 Query 15010 AGAA--TTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTG 15067 | || | | | | ||||| |||||||| |||||| | || || || ||||| || | Sbjct 42301 ACAAAGTACGCCCATCTTCCAATTGTTTACCAGCGAAGATTAAGCGTTGTTGATCTGGAG 42360 Query 15068 GAATTCCTTCCTTGTCACAAAT-TTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCT 15126 ||||||||||||| || ||| ||||| ||| || || |||||||| | || Sbjct 42361 GAATTCCTTCCTTATCTTGAATCTTTGC-TTTAACTTGATCAATAGTATCATTGGACTCG 42419 Query 15127 ACGTCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATA 15177 || || | |||||||||||| || || || || || || || ||||||||| Sbjct 42420 ACTTCAAGGGTAATGGTTTTCCCAGTAAGGGTCTTGACGAATATTTGCATA 42470 Score = 95.1 bits (104), Expect = 9e-15 Identities = 146/206 (71%), Gaps = 2/206 (1%) Strand=Plus/Plus Query 14973 ATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCGCGTCTTCTAATTG 15032 ||| || ||||| |||||||| || || ||||| | | | | | ||||| ||||| Sbjct 41354 ATGGAGAGTAGATTCTTTTTGAATATTATAATCCGATAAAGTACGGCCATCTTCCAATTG 41413 Query 15033 TTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACAAAT-TT 15091 ||| |||||| | ||||| || || || || ||||| |||||||| || ||| || Sbjct 41414 TTTACCAGCGAAGATCAAGCGTTGCTGATCTGGAGGAATACCTTCCTTATCTTGAATCTT 41473 Query 15092 TGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTTACCTG 15151 |||||| || ||||| ||||| || || || | |||||| |||||||| | Sbjct 41474 TGCTTTA-ACTTGGTCTATGGTATCAGAGGACTCAACTTCAAGGGTAATTGTTTTACCGG 41532 Query 15152 TCAGAGTTTTTACAAAAATTTGCATA 15177 | || || || || |||||||||||| Sbjct 41533 TGAGGGTCTTGACGAAAATTTGCATA 41558 Score = 95.1 bits (104), Expect = 9e-15 Identities = 160/230 (70%), Gaps = 4/230 (2%) Strand=Plus/Plus Query 14950 CCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTG 15009 ||||||| || | | || | ||| || || || |||||||| || || ||||| || Sbjct 41787 CCACCTCTTAAACGGAGTACGAGATGGAGAGTTGATTCTTTTTGAATATTATAATC--TG 41844 Query 15010 AGAATTCTCG--CGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTG 15067 | || || | |||||||||||||| |||||| | ||||| || ||||| || | Sbjct 41845 ACAACGTACGACCATCTTCTAATTGTTTACCAGCGAAGATCAAGCGTTGTTGATCTGGAG 41904 Query 15068 GAATTCCTTCCTTGTCACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTA 15127 | || ||||| || || ||| || ||||||| ||||| ||||| || | Sbjct 41905 GGATACCTTCTTTATCTTGAATCTTCGTTTTTACTTGATCTATGGTATCAGAGGACTCGA 41964 Query 15128 CGTCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATA 15177 | || | ||||| |||||||| || || || || || |||||||||||| Sbjct 41965 CTTCAAGAGTAATTGTTTTACCGGTGAGGGTCTTGACGAAAATTTGCATA 42014 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 357343233414860