Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhizophagus_20irregularis_20[genbank_20GCA_5F001593125.1_202016-03- 16] 11,196 sequences; 125,353,551 total letters Query= NC_013288.1 Length=191761 Score E Sequences producing significant alignments: (Bits) Value seq370 84.2 3e-11 >seq370 Length=116867 Score = 84.2 bits (92), Expect = 3e-11 Identities = 166/244 (68%), Gaps = 4/244 (2%) Strand=Plus/Plus Query 116314 ACGGGATAAAAATTCCTATCGATAACCCTATTTAGATTTTTGGTGACAACCTTTGTGATT 116373 ||||||||| |||| ||| || || |||||| ||| || | ||||| || | ||| Sbjct 19228 ACGGGATAATAATTTTCATCAATGACTTTATTTAAATTCTTTATAACAACTTTAGCAATT 19287 Query 116374 TCATGAAGCTTTTCGTAATCAAAA--CTGCGAGTCTCTTCATTGACATACTTAGGAAGGG 116431 ||||||||||| | |||||||| | ||| | | ||| ||| | ||||| | | Sbjct 19288 TCATGAAGCTTCAAGAAATCAAAAGTTTTCGATTTGGT--ATTAACAAATTTAGGTAATG 19345 Query 116432 CGATTGACGCCAGATTACACACAGAGGTCTCATCCTTATCAGTGTACTCTATAATTTCCG 116491 ||||| || | |||||| || | ||||| |||| || || | |||||| | Sbjct 19346 AAATTGAAGCTAAATTACAAACGGCTACTTCATCGGGTGCAGTATATTCAACAATTTCAG 19405 Query 116492 TACACAAATTTGAACTCTTAATGGTGCCCAAGTTCTTTTGATTTGACTTTGTGTTACACG 116551 |||| ||||| || | | || || || | ||||||||||| || ||| ||||| | Sbjct 19406 TACATAAATTAGAGCATGTTATAGTACCAAGATTCTTTTGATTAGATTTTTCATTACAAG 19465 Query 116552 CATC 116555 ||| Sbjct 19466 AATC 19469 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 613421339667360