Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhizophagus_20irregularis_20[genbank_20GCA_5F001593125.1_202016-03- 16] 11,196 sequences; 125,353,551 total letters Query= NC_013756.1 Length=368454 Score E Sequences producing significant alignments: (Bits) Value seq1465 116 9e-21 seq256 114 3e-20 seq218 89.7 1e-12 >seq1465 Length=43607 Score = 116 bits (128), Expect = 9e-21 Identities = 151/209 (72%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCT 199477 || || || |||||||| ||||||||||||| ||||| || | ||| || | ||||||| Sbjct 26801 AGCACGAGATGGAGAGTTGACTCCTTTTGGATATTGTAATCTGACAAGGTACGTCCATCT 26860 Query 199478 TCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCC 199537 |||| || || ||||| ||||| | || ||||| ||||| ||| |||||| || Sbjct 26861 TCCAATTGTTTACCGGCAAAGATCAAGCGTTGCTGATCCGGGGGAATGCCTTCTTTGTCT 26920 Query 199538 TGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTC 199597 |||||||| || || || | ||| |||| | ||||| || | || || || Sbjct 26921 TGAATCTTCGCTTTAACTTGGTCAATGGTATCTGAGGACTCTACTTCAAGAGTAATAGTT 26980 Query 199598 TTACCCGTGAGAGTTTTCACAAAAATTTG 199626 ||||| || ||||| || || |||||||| Sbjct 26981 TTACCGGTAAGAGTCTTAACGAAAATTTG 27009 Score = 96.9 bits (106), Expect = 8e-15 Identities = 88/111 (79%), Gaps = 0/111 (0%) Strand=Plus/Plus Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCT 199477 || |||||||| ||||| ||||| ||||||| || ||||| | |||||| | ||||||| Sbjct 27029 AGAACAAGGTGAAGAGTTGACTCTTTTTGGATATTATAGTCGGACAAAGTACGTCCATCT 27088 Query 199478 TCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCT 199528 |||||||| || || |||||||| | || ||||| || ||| ||| ||| Sbjct 27089 TCCAGCTGTTTACCAGCGAAGATCAAGCGTTGCTGATCTGGAGGAATACCT 27139 Score = 87.8 bits (96), Expect = 4e-12 Identities = 68/81 (84%), Gaps = 0/81 (0%) Strand=Plus/Minus Query 200938 ATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAA 200997 |||||||| || || ||| ||||||||||| | |||||| |||| || || |||| ||| Sbjct 27111 ATCTTCGCTGGTAAACAGCTGGAAGATGGACGTACTTTGTCCGACTATAATATCCAAAAA 27052 Query 200998 GAGTCTACTCTTCACCTTGTT 201018 ||||| ||||||||||||||| Sbjct 27051 GAGTCAACTCTTCACCTTGTT 27031 >seq256 Length=68436 Score = 114 bits (126), Expect = 3e-20 Identities = 156/218 (72%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 199409 CGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTC 199468 ||||| | || || | || || || ||||| ||||| | |||||||||| | || Sbjct 65644 CGAAGACGAAGCACCAAATGAAGTGTTGACTCTTTTTGAATATTGTAGTCAGAAAGGGTT 65703 Query 199469 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCT 199528 | |||||| || || || || |||||||| |||||||| ||||| || || ||| ||| Sbjct 65704 CGTCCATCCTCAAGTTGTTTACCGGCGAAAATGAGACGTTGCTGATCTGGGGGAATACCT 65763 Query 199529 TCTCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAAC 199588 ||| || ||||||||| || || |||| ||| || | | || || ||||| Sbjct 65764 TCTTTGTCTTGAATCTTTGCTTTTACTTGATCGATGGTATCGGAAGACTCAACTTCCAAA 65823 Query 199589 GTGATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 || || || || || || |||||||| ||||||||||| Sbjct 65824 GTAATGGTTTTTCCAGTTAGAGTTTTAACAAAAATTTG 65861 Score = 109 bits (120), Expect = 1e-18 Identities = 153/211 (73%), Gaps = 4/211 (2%) Strand=Plus/Plus Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCT 199477 ||||| ||||| ||||| || || ||||||| ||| || || | | ||| | |||||| Sbjct 65425 AGGACGAGGTGAAGAGTTGATTCTTTTTGGATGTTATAATCCGAAAGAGTACGACCATCT 65484 Query 199478 TCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCC 199537 |||| ||||| || ||||| || | ||| ||||| || ||| || || ||| || Sbjct 65485 TCCAATTGCTTACCAGCGAAAATCAAACGTTGCTGATCTGGAGGGATACCCTCTTTATCT 65544 Query 199538 TGAATCTTTTGCTTCA--CGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCG 199595 ||||| ||| | || | | ||| | | ||| || | || ||| || || | || |||| Sbjct 65545 TGAAT-TTTGGTTTTAACCTGAT-CAATGGTATCAGATGATTCGACCTCAAGGGTAATCG 65602 Query 199596 TCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 ||||||| || || ||||| ||||||||||| Sbjct 65603 TCTTACCAGTAAGTGTTTTTACAAAAATTTG 65633 >seq218 Length=131350 Score = 89.7 bits (98), Expect = 1e-12 Identities = 145/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCT 199477 || || || |||||||| || |||||||| | || ||||| | ||||| | |||||| Sbjct 41574 AGTACGAGATGGAGAGTTGATTCCTTTTGAATATTATAGTCCGATAAAGTACGGCCATCT 41633 Query 199478 TCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCC 199537 |||| || || ||||||||||| | || || || || || || ||||| || Sbjct 41634 TCCAATTGTTTACCGGCGAAGATCAAGCGTTGTTGATCTGGGGGGATACCTTCCTTATCT 41693 Query 199538 TGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTC 199597 ||||||||| || || || | ||| || | | || || || | || || || Sbjct 41694 TGAATCTTTGCTTTAACTTGATCTATGGTATCAGAGGACTCGACTTCAAGAGTAATTGTT 41753 Query 199598 TTACCCGTGAGAGTTTTCACAAAAATTTG 199626 ||||| |||||||| || || |||||||| Sbjct 41754 TTACCGGTGAGAGTCTTGACGAAAATTTG 41782 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1178752485170132