Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhizophagus_20irregularis_20[genbank_20GCA_5F001593125.1_202016-03- 16] 11,196 sequences; 125,353,551 total letters Query= NC_013953.1 Length=156344 Score E Sequences producing significant alignments: (Bits) Value seq256 125 7e-24 seq218 89.7 5e-13 seq1465 86.0 6e-12 >seq256 Length=68436 Score = 125 bits (138), Expect = 7e-24 Identities = 166/228 (73%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 |||||||| |||||||| || ||||| ||||||||||||||| | ||||| ||| || | Sbjct 66092 ATGCAAATCTTCGTAAAGACACTCACCGGCAAAACCATCACCTTGGACGTAGAGTCCTCG 66033 Query 38304 GACAGCGTGCAAACGCTTAAAGA-AAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362 || | | | | | | |||| | ||||| | || || ||||| || ||| | ||||| Sbjct 66032 GATACCAT-CGACCAAGTAAAAACCAAAATTCAAGATAAGGAGGGTATCCCCCCAGACCA 65974 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 || || ||||||| ||| || ||||| || || || | || ||||| ||||||||| Sbjct 65973 GCAACGTCTCATTTTCGCTGGTAAACAACTTGAGGATGGACGAACCCTTTCCGACTACAA 65914 Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGG 38470 || ||||| ||| | || || ||| | || || ||| | | ||||| Sbjct 65913 TATTCAAAAAGAATCCACTCTTCATCTCGTTCTCCGTCTTCGTGGCGG 65866 Score = 107 bits (118), Expect = 2e-18 Identities = 156/219 (71%), Gaps = 6/219 (3%) Strand=Plus/Minus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 |||||||| || || ||||| || || || |||||||| || | || || ||| | || Sbjct 65864 ATGCAAATTTTTGTTAAAACTCTAACTGGAAAAACCATTACTTTGGAAGTTGAGTCTTCC 65805 Query 38304 GA---CAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGAC 38360 || || || ||| | |||| ||| || | |||||||| || |||||| | || Sbjct 65804 GATACCATCGATCAAG---TAAAAGCAAAGATTCAAGACAAAGAAGGTATTCCCCCAGAT 65748 Query 38361 CAACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTAC 38420 || || || ||||||| ||| || ||||| || || || | || ||||| |||||| Sbjct 65747 CAGCAACGTCTCATTTTCGCCGGTAAACAACTTGAGGATGGACGAACCCTTTCTGACTAC 65688 Query 38421 AACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGT 38459 || || ||||| || | || || ||||||||||| ||| Sbjct 65687 AATATTCAAAAAGAGTCAACACTTCATTTGGTGCTTCGT 65649 >seq218 Length=131350 Score = 89.7 bits (98), Expect = 5e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 |||||||||||||| || || || || || |||||||| ||| | || |||||| ||| Sbjct 42469 ATGCAAATATTCGTCAAGACCCTTACTGGGAAAACCATTACCCTTGAAGTCGAGTCCAAT 42410 Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAA 38363 || | | | |||||| ||| || | || || || |||||||| | || ||| Sbjct 42409 GATACTATTGATCAAGTTAAAGCAAAGATTCAAGATAAGGAAGGAATTCCTCCAGATCAA 42350 Query 38364 CAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 38423 || || | || | ||| || ||||| |||| || | ||| || | || || || Sbjct 42349 CAACGCTTAATCTTCGCTGGTAAACAATTGGAAGATGGGCGTACTTTGTCAGATTATAAT 42290 Query 38424 ATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGG 38470 || ||||| ||| | || || ||| | || || ||||| ||||| || Sbjct 42289 ATTCAAAAAGAATCAACTCTCCATCTCGTACTCCGTTTAAGAGGTGG 42243 >seq1465 Length=43607 Score = 86.0 bits (94), Expect = 6e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 |||||||| ||||| || || || || || ||||| || || | || || ||| || | Sbjct 27012 ATGCAAATTTTCGTTAAGACTCTTACCGGTAAAACTATTACTCTTGAAGTAGAGTCCTCA 26953 Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAA 38363 || | | | | |||||| || || | |||||||| || |||||| | || || Sbjct 26952 GATACCATTGACCAAGTTAAAGCGAAGATTCAAGACAAAGAAGGCATTCCCCCGGATCAG 26893 Query 38364 CAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 38423 || || | || | || || ||||| |||| || | || ||| | || ||||| Sbjct 26892 CAACGCTTGATCTTTGCCGGTAAACAATTGGAAGATGGACGTACCTTGTCAGATTACAAT 26833 Query 38424 ATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGG 38470 ||||||||||| | || || ||| | ||||| ||||| ||||| || Sbjct 26832 ATCCAAAAGGAGTCAACTCTCCATCTCGTGCTCCGTTTAAGAGGTGG 26786 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 500102800816640