Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhizophagus_20irregularis_20[genbank_20GCA_5F001593125.1_202016-03- 16] 11,196 sequences; 125,353,551 total letters Query= NC_014766.1 Length=194022 Score E Sequences producing significant alignments: (Bits) Value seq106 84.2 3e-11 seq54 82.4 9e-11 >seq106 Length=96187 Score = 84.2 bits (92), Expect = 3e-11 Identities = 120/167 (72%), Gaps = 4/167 (2%) Strand=Plus/Plus Query 176912 TTCCCACGAAGAGGGAAGACACCGTAGTGATCGCGACCAACCACAGAGAGACCCGCAACC 176971 ||||||||||| ||||| || || || | || |||||||| | ||| | || ||||| Sbjct 10173 TTCCCACGAAGCGGGAAAACTCCATAATTGTCACGACCAACTATAGAAAATCCGGCAACT 10232 Query 176972 GCGAGCGTTTTCGCAGAATCACCCTCTGTCACGATGAGTGTACA--CTTGCCAGATTGTG 177029 || | | || |||||||| || || || | ||| | ||||| |||| || || | Sbjct 10233 GCCAAAGCCTTTGCAGAATCGCCTTCAGTAAGGATTAAAGTACAATCTTGACATTTTTTA 10292 Query 177030 CCGTACCCGCCTTGTTCGCATCATCCAATTTGGGAATACCAGTAAtt 177076 ||| || || || || |||||||||| ||| | |||||| || ||| Sbjct 10293 CCG--CCGGCATTATTTGCATCATCCAGTTTAGCAATACCCGTGATT 10337 >seq54 Length=215934 Score = 82.4 bits (90), Expect = 9e-11 Identities = 146/209 (70%), Gaps = 8/209 (4%) Strand=Plus/Plus Query 102110 AGTTCCATGTATTCAAAAGAAAGCGGATTGGGCTATGAAGTGGTTT---GATACAAAGTC 102166 ||| || || |||| ||| ||||||||||||||| | ||| || |||| | || Sbjct 101825 AGTCCCTTGCATTCGAAAAAAAGCGGATTGGGCTCTTCGATGGATTTCCGATAAGGAATC 101884 Query 102167 GCGTTCCTTTGCTGAGCGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTGG 102226 ||| |||||||| || || | || ||||| |||||| || || ||||| ||||| Sbjct 101885 ---TTCATTTGCTGAACGTCTTGTAGCGTTTGCCGCTGTTGAAGGAATATTCTTTTCTGG 101941 Query 102227 TTCCTTCTGCG-CTATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCT 102285 | ||| ||| | || | |||| | ||||| |||| | |||||||| | || | Sbjct 101942 AGCTTTC-GCGTCAATCTTTTGGTTAAAGAAAAGAGGAATGATGCCAGGATTAACTTTTT 102000 Query 102286 CCAACGAGCTTATCTCTCGTGACGAGGGA 102314 ||||||| || || ||||| || || ||| Sbjct 102001 CCAACGAACTAATTTCTCGAGATGAAGGA 102029 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 620655527101120